Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.2e-54 214.2 196 100.0
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.4e-46 189.5 103 92.2
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 2.4e-46 189.5 103 92.2
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.2e-46 189.1 103 92.2
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.2e-46 189.1 103 92.2
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.6e-45 186.8 103 89.3
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 3.5e-45 185.7 103 91.3
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 6.0e-45 184.9 103 91.3
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 7.8e-45 184.5 103 90.3
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 1.0e-44 184.1 103 88.3
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 1.3e-44 183.7 103 89.3
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 2.3e-44 183.0 103 91.3
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.3e-44 183.0 103 87.4
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.3e-44 183.0 103 87.4
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 3.0e-44 182.6 103 90.3
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 3.0e-44 182.6 102 91.2
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 3.0e-44 182.6 102 91.2
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 3.0e-44 182.6 103 88.3
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 3.9e-44 182.2 103 90.3
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 5.1e-44 181.8 103 90.3
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 5.1e-44 181.8 103 90.3
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 6.6e-44 181.4 103 89.3
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 8.7e-44 181.0 102 90.2
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 1.1e-43 180.6 102 90.2
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.1e-43 180.6 103 88.3
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.1e-43 180.6 103 87.4
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 1.5e-43 180.3 103 86.4
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 1.5e-43 180.3 103 87.4
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 1.5e-43 180.3 103 88.3
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 1.9e-43 179.9 103 88.3
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 2.5e-43 179.5 103 87.4
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.5e-43 179.5 103 87.4
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.5e-43 179.5 103 87.4
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 2.5e-43 179.5 102 90.2
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 3.3e-43 179.1 103 88.3
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 4.3e-43 178.7 102 89.2
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 5.6e-43 178.3 105 88.6
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 7.3e-43 177.9 103 87.4
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 7.3e-43 177.9 103 86.4
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.3e-42 177.2 103 84.5
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.3e-42 177.2 103 84.5
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 1.3e-42 177.2 103 85.4
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 1.6e-42 176.8 103 86.4
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 1.6e-42 176.8 102 85.3
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 1.6e-42 176.8 102 86.3
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 2.1e-42 176.4 103 85.4
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 2.1e-42 176.4 103 84.5
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 2.1e-42 176.4 103 84.5
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 2.1e-42 176.4 103 84.5
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 3.6e-42 175.6 102 84.3
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 3.6e-42 175.6 102 84.3
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 3.6e-42 175.6 103 83.5
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 3.6e-42 175.6 103 83.5
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 3.6e-42 175.6 103 83.5
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 4.8e-42 175.3 103 84.5
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 8.1e-42 174.5 103 83.5
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 1.1e-41 174.1 103 82.5
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.1e-41 174.1 102 85.3
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 1.1e-41 174.1 103 82.5
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.4e-41 173.7 103 82.5
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 1.8e-41 173.3 105 82.9
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 1.8e-41 173.3 103 81.6
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 2.4e-41 172.9 103 80.6
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 2.4e-41 172.9 104 84.6
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 2.4e-41 172.9 104 84.6
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 2.4e-41 172.9 103 82.5
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 2.4e-41 172.9 102 85.3
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 2.4e-41 172.9 103 83.5
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 2.4e-41 172.9 110 81.8
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 3.1e-41 172.6 102 83.3
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 3.1e-41 172.6 103 82.5
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 3.1e-41 172.6 103 82.5
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 4.0e-41 172.2 103 80.6
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 4.0e-41 172.2 102 84.3
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 4.0e-41 172.2 104 82.7
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 4.0e-41 172.2 104 82.7
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 5.3e-41 171.8 102 81.4
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 5.3e-41 171.8 103 83.5
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 9.0e-41 171.0 101 85.1
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.5e-40 170.2 102 81.4
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.5e-40 170.2 102 81.4
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 2.6e-40 169.5 103 78.6
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 2.6e-40 169.5 103 78.6
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 4.5e-40 168.7 103 77.7
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 4.5e-40 168.7 103 78.6
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 5.8e-40 168.3 103 77.7
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 9.9e-40 167.5 105 82.9
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.3e-39 167.2 103 76.7
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 1.3e-39 167.2 103 79.6
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 1.7e-39 166.8 103 76.7
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 1.7e-39 166.8 103 76.7
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 1.7e-39 166.8 102 82.4
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 2.2e-39 166.4 103 80.6
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 2.2e-39 166.4 126 73.0
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 3.8e-39 165.6 103 76.7
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 6.4e-39 164.9 105 77.1
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 6.4e-39 164.9 103 75.7
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 6.4e-39 164.9 105 77.1
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 6.4e-39 164.9 105 77.1
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 6.4e-39 164.9 103 75.7
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 6.4e-39 164.9 105 77.1
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 6.4e-39 164.9 103 75.7
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 2.4e-38 162.9 102 78.4
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 3.2e-38 162.5 105 76.2
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 3.2e-38 162.5 105 76.2
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 3.2e-38 162.5 101 80.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 3.2e-38 162.5 101 80.2
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 4.2e-38 162.2 103 75.7
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 4.2e-38 162.2 104 79.8
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 4.2e-38 162.2 104 79.8
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 1.2e-37 160.6 164 57.3
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 3.5e-37 159.1 128 69.5
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 6.0e-37 158.3 105 77.1
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 6.7e-36 154.8 94 80.9
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 6.7e-36 154.8 105 74.3
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 6.7e-36 154.8 105 74.3
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 5.6e-35 151.8 103 74.8
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 2.8e-34 149.4 106 71.7
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.7e-34 149.1 191 48.7
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 1.8e-33 146.7 104 69.2
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 2.6e-32 142.9 181 48.6
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.9e-32 141.0 71 97.2
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 2.9e-31 139.4 102 66.7
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.2e-30 136.0 225 41.3
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 2.1e-29 133.3 75 88.0
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 7.9e-29 131.3 74 86.5
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 1.3e-28 130.6 74 85.1
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 6.7e-28 128.3 74 83.8
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 1.3e-26 124.0 117 61.5
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 3.7e-26 122.5 74 77.0
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 2.4e-25 119.8 74 75.7
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 7.6e-24 114.8 73 75.3
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 3.8e-23 112.5 66 78.8
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 3.8e-23 112.5 65 84.6
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 3.8e-23 112.5 65 84.6
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 6.7e-20 101.7 73 68.5
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 2.5e-19 99.8 69 68.1
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 4.8e-18 95.5 137 48.9
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 5.3e-17 92.0 102 51.0
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.2e-16 90.9 67 68.7
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 5.9e-16 88.6 57 71.9
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 6.5e-15 85.1 82 56.1
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 1.1e-14 84.3 104 53.8
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 1.4e-14 84.0 115 47.8
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 3.2e-14 82.8 74 56.8
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 3.2e-14 82.8 74 56.8
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 3.2e-14 82.8 74 56.8
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 2.5e-11 73.2 85 52.9
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 7.4e-11 71.6 43 88.4
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 2.8e-10 69.7 34 88.2
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 1.8e-09 67.0 40 82.5
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 1.8e-09 67.0 40 82.5
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 5.3e-09 65.5 42 76.2
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 4.5e-08 62.4 37 81.1
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 1.3e-07 60.8 40 77.5
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-06 57.4 39 71.8
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 1.4e-06 57.4 34 82.4
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 1.9e-06 57.0 35 77.1
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 5.5e-06 55.5 37 73.0


User provided reference genes

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