Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28947 Actinidia chinensis HOM05D001639 ORTHO05D004140 4.1e-240 834.3 422 100.0
vmacro04888 Vaccinium macrocarpon HOM05D001639 ORTHO05D004140 1.9e-160 569.7 423 71.6
Dinv31349 Davidia involucrata HOM05D001639 ORTHO05D004140 1.6e-156 556.6 426 69.2
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 5.3e-155 551.6 423 70.4
Dinv11803 Davidia involucrata HOM05D001639 ORTHO05D004140 3.9e-150 535.4 422 68.5
CSS0047322 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D004140 7.4e-141 504.6 427 63.5
Hma1.2p1_0453F.1_g156050 Hydrangea macrophylla HOM05D001639 ORTHO05D004140 6.7e-134 481.5 425 62.1
Lj1A922T71 Lonicera japonica HOM05D001639 ORTHO05D004140 5.7e-133 478.4 423 61.2
CSS0019747 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D004140 7.4e-133 478.0 391 67.8
RcHm_v2.0_Chr1g0364061 Rosa chinensis HOM05D001639 ORTHO05D004140 2.0e-122 443.4 427 59.0
Cfa001598 Carpinus fangiana HOM05D001639 ORTHO05D004140 4.5e-122 442.2 426 59.4
CiPaw.02G176300 Carya illinoinensis HOM05D001639 ORTHO05D004140 5.9e-122 441.8 425 59.3
Prupe.2G217800 Prunus persica HOM05D001639 ORTHO05D004140 8.5e-121 438.0 427 58.1
FvH4_7g20100 Fragaria vesca HOM05D001639 ORTHO05D004140 1.1e-120 437.6 427 58.5
FAN03G2481 Fragaria x ananassa HOM05D001639 ORTHO05D004140 9.4e-120 434.5 427 58.3
Thecc.10G068700 Theobroma cacao HOM05D001639 ORTHO05D004140 1.6e-119 433.7 436 56.7
COL.COLO4_23728 Corchorus olitorius HOM05D001639 ORTHO05D004140 7.9e-119 431.4 438 56.4
FAN06G3703 Fragaria x ananassa HOM05D001639 ORTHO05D004140 7.9e-119 431.4 427 57.8
TAR369G0055 Trochodendron aralioides HOM05D001639 ORTHO05D004140 1.4e-118 430.6 419 56.1
Haze_16931 Corylus avellana HOM05D001639 ORTHO05D004140 2.3e-118 429.9 426 58.0
FAN10G2085 Fragaria x ananassa HOM05D001639 ORTHO05D004140 1.1e-117 427.6 427 56.9
CiPaw.01G276100 Carya illinoinensis HOM05D001639 ORTHO05D004140 2.0e-117 426.8 422 58.3
Ciclev10030708m.g Citrus clementina HOM05D001639 ORTHO05D004140 5.7e-117 425.2 437 56.8
FAN01G0541 Fragaria x ananassa HOM05D001639 ORTHO05D004140 7.4e-117 424.9 427 56.7
MD07G1178700 Malus domestica HOM05D001639 ORTHO05D004140 1.3e-116 424.1 426 56.1
Atru.chr12.647 Acer truncatum HOM05D001639 ORTHO05D004140 1.7e-116 423.7 442 56.8
Atru.chr12.674 Acer truncatum HOM05D001639 ORTHO05D004140 1.7e-116 423.7 442 56.8
Duzib106G0065 Durio zibethinus HOM05D001639 ORTHO05D004140 2.2e-116 423.3 431 56.6
QL08p056763 Quercus lobata HOM05D001639 ORTHO05D004140 1.4e-115 420.6 437 57.0
MD01G1130600 Malus domestica HOM05D001639 ORTHO05D004140 1.8e-115 420.2 426 56.1
Manes.10G043100 Manihot esculenta HOM05D001639 ORTHO05D004140 1.8e-115 420.2 435 54.7
GSVIVG01016323001 Vitis vinifera HOM05D001639 ORTHO05D004140 5.3e-115 418.7 426 57.7
Duzib128G0828 Durio zibethinus HOM05D001639 ORTHO05D004140 7.7e-114 414.8 429 54.1
Cpa.g.sc60.50 Carica papaya HOM05D001639 ORTHO05D004140 1.6e-111 407.1 427 53.9
Sabra10G0168600 Salix brachista HOM05D001639 ORTHO05D004140 2.1e-111 406.8 443 54.2
Potri.008G043700 Populus trichocarpa HOM05D001639 ORTHO05D004140 3.0e-110 402.9 444 54.1
Solyc04g050040.3 Solanum lycopersicum HOM05D001639 ORTHO05D004140 1.1e-109 401.0 426 54.0
Peaxi162Scf00373g00710 Petunia axillaris HOM05D001639 ORTHO05D004140 2.8e-108 396.4 423 52.5
Sopen04g020690 Solanum pennellii HOM05D001639 ORTHO05D004140 3.7e-108 396.0 426 53.8
Potri.010G217900 Populus trichocarpa HOM05D001639 ORTHO05D004140 6.3e-108 395.2 433 54.0
PGR142G2027 Punica granatum HOM05D001639 ORTHO05D004140 1.8e-107 393.7 435 55.2
Sabra08G0030200 Salix brachista HOM05D001639 ORTHO05D004140 9.1e-107 391.3 444 53.4
AUR62027922 Chenopodium quinoa HOM05D001639 ORTHO05D004140 1.2e-106 391.0 432 53.2
Gohir.A01G133400 Gossypium hirsutum HOM05D001639 ORTHO05D004140 2.6e-106 389.8 432 50.9
Gorai.002G143300 Gossypium raimondii HOM05D001639 ORTHO05D004140 2.6e-106 389.8 432 51.2
Gohir.D01G117800 Gossypium hirsutum HOM05D001639 ORTHO05D004140 5.9e-106 388.7 432 51.2
AUR62020778 Chenopodium quinoa HOM05D001639 ORTHO05D004140 1.0e-105 387.9 431 52.4
MELO3C012444.2 Cucumis melo HOM05D001639 ORTHO05D004140 1.0e-105 387.9 428 53.5
CsaV3_5G036460 Cucumis sativus L. HOM05D001639 ORTHO05D004140 2.9e-105 386.3 426 53.3
Hund22486 Selenicereus undatus HOM05D001639 ORTHO05D004140 2.9e-105 386.3 436 53.7
EL10Ac2g03564 Beta vulgaris HOM05D001639 ORTHO05D004140 1.1e-104 384.4 426 51.2
DCAR_006463 Daucus carota HOM05D001639 ORTHO05D004140 1.9e-104 383.6 424 52.1
Nn2g10677 Nelumbo nucifera HOM05D001639 ORTHO05D004140 4.2e-104 382.5 425 52.5
Eucgr.G02805 Eucalyptus grandis HOM05D001639 ORTHO05D004140 7.2e-104 381.7 436 53.4
Manes.07G102700 Manihot esculenta HOM05D001639 ORTHO05D004140 9.4e-104 381.3 431 51.5
Nitab4.5_0000061g0120 Nicotiana tabacum HOM05D001639 ORTHO05D004140 2.7e-103 379.8 397 53.9
HanXRQChr14g0440781 Helianthus annuus HOM05D001639 ORTHO05D004140 8.0e-103 378.3 425 51.5
ClCG05G020850 Citrullus lanatus HOM05D001639 ORTHO05D004140 1.2e-101 374.4 424 51.7
Nitab4.5_0003116g0030 Nicotiana tabacum HOM05D001639 ORTHO05D004140 1.2e-101 374.4 398 54.3
TWI38G1401 Tripterygium wilfordii HOM05D001639 ORTHO05D004140 1.2e-101 374.4 438 53.2
CAN.G925.4 Capsicum annuum HOM05D001639 ORTHO05D004140 2.2e-100 370.2 421 52.3
Sc20g0002120 Simmondsia chinensis HOM05D001639 ORTHO05D004140 3.7e-100 369.4 428 51.4
Glyma.10G213200 Glycine max HOM05D001639 ORTHO05D004140 6.3e-100 368.6 432 51.4
TAR633G2433 Trochodendron aralioides HOM05D001639 ORTHO05D004140 8.2e-100 368.2 423 52.5
Nn2g13007 Nelumbo nucifera HOM05D001639 ORTHO05D004140 1.8e-99 367.1 423 52.5
Glyma.20G177800 Glycine max HOM05D001639 ORTHO05D004140 5.3e-99 365.5 434 50.7
Ah.10g033000 Amaranthus hybridus HOM05D001639 ORTHO05D004140 7.0e-99 365.2 442 50.7
Cc09_g02780 Coffea canephora HOM05D001639 ORTHO05D004140 5.0e-97 359.0 428 50.9
PSO339G2101 Papaver somniferum HOM05D001639 ORTHO05D004140 5.0e-97 359.0 434 50.5
Lsat_1_v5_gn_2_114120 Lactuca sativa HOM05D001639 ORTHO05D004140 8.5e-97 358.2 435 50.6
Ca_10588_v3 Cicer arietinum L. HOM05D001639 ORTHO05D004140 1.5e-96 357.5 436 50.0
PSO384G0277 Papaver somniferum HOM05D001639 ORTHO05D004140 5.5e-96 355.5 433 50.1
Lalb_Chr02g0141921 Lupinus albus HOM05D001639 ORTHO05D004140 1.2e-95 354.4 433 49.9
Sed0012976 Sechium edule HOM05D001639 ORTHO05D004140 3.6e-95 352.8 422 50.7
Thhalv10016258m.g Eutrema salsugineum HOM05D001639 ORTHO05D004140 1.8e-94 350.5 430 49.3
arahy.Tifrunner.gnm1.ann1.ME3VYR Arachis hypogaea HOM05D001639 ORTHO05D004140 1.5e-93 347.4 432 47.7
ECA238G1467 Erigeron canadensis HOM05D001639 ORTHO05D004140 1.5e-93 347.4 442 48.0
HanXRQChr07g0200411 Helianthus annuus HOM05D001639 ORTHO05D004140 1.5e-93 347.4 435 49.2
AL4G31920 Arabidopsis lyrata HOM05D001639 ORTHO05D004140 2.6e-93 346.7 435 48.5
Psat6g184800 Pisum sativum HOM05D001639 ORTHO05D004140 4.4e-93 345.9 423 47.0
Aa31sc26G20 Aethionema arabicum HOM05D001639 ORTHO05D004140 1.3e-92 344.4 439 48.3
VMungo0720G0568 Vigna mungo HOM05D001639 ORTHO05D004140 2.2e-92 343.6 437 49.0
Migut.F02030 Erythranthe guttata HOM05D001639 ORTHO05D004140 5.4e-91 339.0 438 47.0
Carub.0004s1757 Capsella rubella HOM05D001639 ORTHO05D004140 1.2e-90 337.8 431 46.4
Sp4g18070 Schrenkiella parvula HOM05D001639 ORTHO05D004140 1.6e-90 337.4 429 47.6
arahy.Tifrunner.gnm1.ann1.66TP8S Arachis hypogaea HOM05D001639 ORTHO05D004140 4.5e-90 335.9 408 48.3
Medtr1g095780 Medicago truncatula HOM05D001639 ORTHO05D004140 5.9e-90 335.5 425 47.3
Lj5g0017893 Lotus japonicus HOM05D001639 ORTHO05D004140 7.7e-90 335.1 424 46.7
Phvul.007G092200 Phaseolus vulgaris HOM05D001639 ORTHO05D004140 7.7e-90 335.1 436 46.8
AT2G35800 Arabidopsis thaliana HOM05D001639 ORTHO05D004140 1.3e-89 334.3 436 47.7
Oeu051327.1 Olea europaea HOM05D001639 ORTHO05D004140 6.6e-89 332.0 429 49.4
Gohir.D06G174400 Gossypium hirsutum HOM05D001639 ORTHO05D004140 1.9e-88 330.5 425 47.1
C03p23000 Brassica napus HOM05D001639 ORTHO05D004140 3.3e-88 329.7 429 48.3
BolC3t14701H Brassica oleracea HOM05D001639 ORTHO05D004140 3.3e-88 329.7 429 48.3
BcaC01g05705 Brassica carinata HOM05D001639 ORTHO05D004140 2.3e-86 323.6 429 47.6
Gorai.010G204000 Gossypium raimondii HOM05D001639 ORTHO05D004140 5.7e-85 318.9 425 46.6
MSTRG.8167 Avicennia marina HOM05D001639 ORTHO05D004140 1.7e-84 317.4 448 45.3
BraA03t11227Z Brassica rapa HOM05D001639 ORTHO05D004140 4.9e-84 315.8 431 46.9
ATR1159G089 Amborella trichopoda HOM05D001639 ORTHO05D004140 6.3e-84 315.5 448 46.7
SGA_v2.0_scaffold329G48833 Striga asiatica HOM05D001639 ORTHO05D004140 2.4e-83 313.5 442 45.0
BraA04t18225Z Brassica rapa HOM05D001639 ORTHO05D004140 4.1e-83 312.8 427 46.8
BcaB06g28874 Brassica carinata HOM05D001639 ORTHO05D004140 1.2e-82 311.2 427 45.2
BcaB01g03879 Brassica carinata HOM05D001639 ORTHO05D004140 2.0e-82 310.5 431 45.9
C04p64790 Brassica napus HOM05D001639 ORTHO05D004140 2.7e-82 310.1 423 46.3
BolC4t27956H Brassica oleracea HOM05D001639 ORTHO05D004140 2.7e-82 310.1 423 46.3
SalBow1G3851 Salvia bowleyana HOM05D001639 ORTHO05D004140 2.7e-82 310.1 447 45.9
Sed0023440 Sechium edule HOM05D001639 ORTHO05D004140 2.7e-82 310.1 423 46.6
A03p19750 Brassica napus HOM05D001639 ORTHO05D004140 3.5e-82 309.7 431 46.6
A04p27270 Brassica napus HOM05D001639 ORTHO05D004140 5.9e-82 308.9 423 45.9
BcaC02g07667 Brassica carinata HOM05D001639 ORTHO05D004140 2.9e-81 306.6 418 45.9
SalBow1G1021 Salvia bowleyana HOM05D001639 ORTHO05D004140 5.0e-81 305.8 447 45.6
TPR.G40285 Trifolium pratense HOM05D001639 ORTHO05D004140 1.5e-80 304.3 391 46.3
Gorai.010G203900 Gossypium raimondii HOM05D001639 ORTHO05D004140 2.5e-80 303.5 424 45.3
Gohir.A06G178800 Gossypium hirsutum HOM05D001639 ORTHO05D004140 6.8e-78 295.4 424 43.4
Gohir.D06G174300 Gossypium hirsutum HOM05D001639 ORTHO05D004140 5.8e-77 292.4 424 44.1
CARHR130070 Cardamine hirsuta HOM05D001639 ORTHO05D004140 6.4e-76 288.9 390 46.2
Lalb_Chr19g0129511 Lupinus albus HOM05D001639 ORTHO05D004140 5.0e-73 279.3 424 41.5
Gohir.A06G178700 Gossypium hirsutum HOM05D001639 ORTHO05D004140 1.5e-72 277.7 336 49.1
Actinidia13005 Actinidia chinensis HOM05D001639 ORTHO05D004140 3.6e-71 273.1 365 49.3
Aqoxy3G00782 Aquilegia oxysepala HOM05D001639 ORTHO05D004140 1.2e-69 268.1 311 51.4
unitig_736.g22511 Utricularia gibba HOM05D001639 ORTHO05D004140 1.1e-67 261.5 444 40.8
Lj8A96T35 Lonicera japonica HOM05D001639 ORTHO05D004140 3.3e-64 250.0 421 40.9
Lj2g0005885 Lotus japonicus HOM05D001639 ORTHO05D004140 1.1e-62 245.0 428 40.7
unitig_37.g12289 Utricularia gibba HOM05D001639 ORTHO05D004140 3.4e-53 213.4 209 55.5
CDE02G2748 Ceratophyllum demersum HOM05D001639 ORTHO05D004140 7.6e-53 212.2 437 37.5
HPP92_019724 Vanilla planifolia HOM05D001639 ORTHO05D004140 1.9e-51 207.6 426 35.4
CDE08G1518 Ceratophyllum demersum HOM05D001639 ORTHO05D004140 1.5e-48 198.0 442 36.4
CDE09G1351 Ceratophyllum demersum HOM05D001639 ORTHO05D004140 1.1e-38 165.2 224 45.1
SEGI_10205 Sequoiadendron giganteum HOM05D001639 ORTHO05D004140 3.4e-37 160.2 453 29.8
Zm00001eb163150 Zea mays HOM05D001639 ORTHO05D004140 1.7e-36 157.9 168 56.0
HPP92_019720 Vanilla planifolia HOM05D001639 ORTHO05D004140 2.1e-34 151.0 395 31.9
Lsat_1_v5_gn_5_52401 Lactuca sativa HOM05D001639 ORTHO05D004140 1.6e-31 141.4 96 78.1
Os11g0103700 Oryza sativa ssp. japonica HOM05D001639 ORTHO05D004140 6.0e-26 122.9 161 49.1
Pp3c11_8770 Physcomitrium patens HOM05D001639 ORTHO05D004140 8.7e-25 119.0 151 49.7
Os12g0103000 Oryza sativa ssp. japonica HOM05D001639 ORTHO05D004140 1.5e-24 118.2 94 69.1
Pp3c7_16780 Physcomitrium patens HOM05D001639 ORTHO05D004140 3.3e-24 117.1 151 49.7
AagrBONN_evm.TU.Sc2ySwM_228.2641 Anthoceros agrestis HOM05D001639 ORTHO05D004140 1.0e-20 105.5 139 44.6
Actinidia26626 Actinidia chinensis HOM05D001639 ORTHO05D004140 4.9e-20 103.2 106 53.8
Hma1.2p1_0926F.1_g237560 Hydrangea macrophylla HOM05D001639 ORTHO05D004140 4.2e-19 100.1 59 79.7
SMO351G0172 Selaginella moellendorffii HOM05D001639 ORTHO05D004140 4.2e-19 100.1 71 62.0
arahy.Tifrunner.gnm1.ann1.Q3J83G Arachis hypogaea HOM05D001639 ORTHO05D004140 3.5e-18 97.1 223 30.5
CBR_g34975 Chara braunii HOM05D001639 ORTHO05D004140 3.5e-18 97.1 78 59.0
SalBow3G3093 Salvia bowleyana HOM05D001639 ORTHO05D360597 3.5e-18 97.1 180 39.4
Lalb_Chr06g0162161 Lupinus albus HOM05D001639 ORTHO05D004140 1.0e-17 95.5 104 52.9
Hund19336 Selenicereus undatus HOM05D001639 ORTHO05D004140 3.0e-17 94.0 96 59.4
SalBow3G2660 Salvia bowleyana HOM05D001639 ORTHO05D356517 3.9e-17 93.6 180 38.3
arahy.Tifrunner.gnm1.ann1.5403MX Arachis hypogaea HOM05D001639 ORTHO05D004140 6.7e-17 92.8 186 33.3
Zm00001eb094320 Zea mays HOM05D001639 ORTHO05D004140 6.7e-17 92.8 65 69.2
DCAR_002967 Daucus carota HOM05D001639 ORTHO05D004140 2.8e-15 87.4 166 34.3
Lalb_Chr21g0305961 Lupinus albus HOM05D001639 ORTHO05D239808 8.2e-15 85.9 113 45.1
SGA_v2.0_scaffold122G33240 Striga asiatica HOM05D001639 ORTHO05D004140 8.2e-15 85.9 329 29.5
MCO02G013 Micromonas commoda HOM05D001639 ORTHO05D004140 1.1e-11 75.5 49 65.3
VMungo0540G2327 Vigna mungo HOM05D001639 ORTHO05D005318 1.1e-11 75.5 55 69.1
CARHR130060 Cardamine hirsuta HOM05D001639 ORTHO05D004140 3.7e-07 60.5 40 70.0
TPR.G1831 Trifolium pratense HOM05D001639 ORTHO05D004140 3.7e-07 60.5 34 79.4
CSS0005011 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D004140 1.4e-06 58.5 32 84.4
Lalb_Chr09g0333471 Lupinus albus HOM05D001639 ORTHO05D238186 5.3e-06 56.6 94 41.5


User provided reference genes

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