Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28941 Actinidia chinensis HOM05D003167 ORTHO05D003929 1.3e-40 169.1 77 100.0
Actinidia26630 Actinidia chinensis HOM05D003167 ORTHO05D003929 8.2e-22 106.7 51 92.2
CSS0014862 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 2.4e-21 105.1 51 88.2
CSS0043785 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 2.4e-21 105.1 51 88.2
Rhsim03G0085500 Rhododendron simsii HOM05D003167 ORTHO05D003929 4.1e-21 104.4 51 90.2
vmacro07353 Vaccinium macrocarpon HOM05D003167 ORTHO05D003929 4.1e-21 104.4 51 90.2
CAN.G738.3 Capsicum annuum HOM05D003167 ORTHO05D003929 5.3e-21 104.0 51 88.2
Cc10_g12700 Coffea canephora HOM05D003167 ORTHO05D003929 5.3e-21 104.0 51 88.2
Nitab4.5_0002027g0020 Nicotiana tabacum HOM05D003167 ORTHO05D003929 5.3e-21 104.0 51 88.2
RcHm_v2.0_Chr3g0471451 Rosa chinensis HOM05D003167 ORTHO05D003929 5.3e-21 104.0 51 88.2
Aqoxy1G01022 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
ClCG10G019590 Citrullus lanatus HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
Ciclev10011207m.g Citrus clementina HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
MELO3C009413.2 Cucumis melo HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
CsaV3_3G036590 Cucumis sativus L. HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
Gohir.A04G067800 Gossypium hirsutum HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
Gohir.D04G106400 Gossypium hirsutum HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
Gorai.009G410400 Gossypium raimondii HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
Manes.08G017200 Manihot esculenta HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
Oeu027192.1 Olea europaea HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
Potri.006G118700 Populus trichocarpa HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
Sabra06G0093300 Salix brachista HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
Sed0027110 Sechium edule HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
Hund04098 Selenicereus undatus HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
THA.LOC104816364 Tarenaya hassleriana HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
Thecc.05G076300 Theobroma cacao HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
TAR623G0013 Trochodendron aralioides HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
GSVIVG01033725001 Vitis vinifera HOM05D003167 ORTHO05D003929 6.9e-21 103.6 51 90.2
Aqoxy1G01021 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 9.0e-21 103.2 51 88.2
DCAR_020795 Daucus carota HOM05D003167 ORTHO05D003929 9.0e-21 103.2 51 88.2
Peaxi162Scf00732g00028 Petunia axillaris HOM05D003167 ORTHO05D003929 9.0e-21 103.2 51 88.2
PGR142G4079 Punica granatum HOM05D003167 ORTHO05D003929 9.0e-21 103.2 51 88.2
Aa31LG1G9100 Aethionema arabicum HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
arahy.Tifrunner.gnm1.ann1.P92TZX Arachis hypogaea HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
arahy.Tifrunner.gnm1.ann1.WY8M22 Arachis hypogaea HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
CANSAT80G1311 Cannabis sativa HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
Cpa.g.sc5.120 Carica papaya HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
Cfa016494 Carpinus fangiana HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
COL.COLO4_22264 Corchorus olitorius HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
Dinv35839 Davidia involucrata HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
Eucgr.K02416 Eucalyptus grandis HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
Hma1.2p1_0564F.1_g179130 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
Lalb_Chr21g0315291 Lupinus albus HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
Lalb_Chr25g0288761 Lupinus albus HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
Phvul.001G184000 Phaseolus vulgaris HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
QL07p041296 Quercus lobata HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
SalBow8G1467 Salvia bowleyana HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 86.3
SalBow8G3947 Salvia bowleyana HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 86.3
Solyc10g085410.3 Solanum lycopersicum HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 86.3
Sopen10g034860 Solanum pennellii HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 86.3
PGSC0003DMG400040194 Solanum tuberosum HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 86.3
unitig_578.g16659 Utricularia gibba HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 86.3
HPP92_017793 Vanilla planifolia HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
Zm00001eb061170 Zea mays HOM05D003167 ORTHO05D003929 1.5e-20 102.4 51 88.2
Haze_19497 Corylus avellana HOM05D003167 ORTHO05D003929 2.0e-20 102.1 51 86.3
Lj3C1008T14 Lonicera japonica HOM05D003167 ORTHO05D003929 2.0e-20 102.1 51 86.3
Peaxi162Scf01089g10011 Petunia axillaris HOM05D003167 ORTHO05D003929 2.0e-20 102.1 51 84.3
Prupe.7G122300 Prunus persica HOM05D003167 ORTHO05D003929 2.0e-20 102.1 51 88.2
Ah.15g091340 Amaranthus hybridus HOM05D003167 ORTHO05D003929 2.6e-20 101.7 51 86.3
CiPaw.10G002600 Carya illinoinensis HOM05D003167 ORTHO05D003929 2.6e-20 101.7 50 90.0
Duzib093G1992 Durio zibethinus HOM05D003167 ORTHO05D003929 2.6e-20 101.7 51 88.2
FvH4_6g17312 Fragaria vesca HOM05D003167 ORTHO05D003929 2.6e-20 101.7 51 86.3
FAN02G2003 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.6e-20 101.7 51 86.3
FAN05G3981 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.6e-20 101.7 51 86.3
FAN05G5009 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.6e-20 101.7 51 86.3
FAN14G2907 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.6e-20 101.7 51 86.3
TPR.G31678 Trifolium pratense HOM05D003167 ORTHO05D003929 2.6e-20 101.7 51 88.2
Glyma.03G188600 Glycine max HOM05D003167 ORTHO05D003929 3.4e-20 101.3 51 86.3
Glyma.19G188800 Glycine max HOM05D003167 ORTHO05D003929 3.4e-20 101.3 51 86.3
VMungo0720G2588 Vigna mungo HOM05D003167 ORTHO05D003929 3.4e-20 101.3 51 86.3
EL10Ac7g16722 Beta vulgaris HOM05D003167 ORTHO05D003929 4.5e-20 100.9 51 86.3
Migut.G00710 Erythranthe guttata HOM05D003167 ORTHO05D003929 4.5e-20 100.9 51 84.3
Psat6g078080 Pisum sativum HOM05D003167 ORTHO05D003929 4.5e-20 100.9 51 86.3
TPR.G27088 Trifolium pratense HOM05D003167 ORTHO05D003929 4.5e-20 100.9 51 86.3
CDE04G1328 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 5.9e-20 100.5 51 84.3
Medtr7g102700 Medicago truncatula HOM05D003167 ORTHO05D003929 5.9e-20 100.5 51 86.3
Psat3g037760 Pisum sativum HOM05D003167 ORTHO05D003929 5.9e-20 100.5 51 86.3
VMungo1383G0302 Vigna mungo HOM05D003167 ORTHO05D003929 5.9e-20 100.5 51 86.3
BcaC07g42222 Brassica carinata HOM05D003167 ORTHO05D003929 7.6e-20 100.1 51 86.3
A09p68130 Brassica napus HOM05D003167 ORTHO05D003929 7.6e-20 100.1 51 86.3
C08p52570 Brassica napus HOM05D003167 ORTHO05D003929 7.6e-20 100.1 51 86.3
BolC8t52784H Brassica oleracea HOM05D003167 ORTHO05D003929 7.6e-20 100.1 51 86.3
BraA09t42148Z Brassica rapa HOM05D003167 ORTHO05D003929 7.6e-20 100.1 51 86.3
Thhalv10006994m.g Eutrema salsugineum HOM05D003167 ORTHO05D003929 7.6e-20 100.1 51 86.3
FAN05G3544 Fragaria x ananassa HOM05D003167 ORTHO05D003929 7.6e-20 100.1 51 84.3
Sp1g02770 Schrenkiella parvula HOM05D003167 ORTHO05D003929 7.6e-20 100.1 51 86.3
SEGI_27063 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 7.6e-20 100.1 51 84.3
SEGI_34935 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 7.6e-20 100.1 51 84.3
AL1G13510 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 1.0e-19 99.8 51 84.3
AT1G03910 Arabidopsis thaliana HOM05D003167 ORTHO05D003929 1.0e-19 99.8 51 84.3
Carub.0001s0306 Capsella rubella HOM05D003167 ORTHO05D003929 1.0e-19 99.8 51 84.3
CARHR003250 Cardamine hirsuta HOM05D003167 ORTHO05D003929 1.0e-19 99.8 51 84.3
TAR636G1269 Trochodendron aralioides HOM05D003167 ORTHO05D003929 1.0e-19 99.8 51 86.3
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 1.3e-19 99.4 51 86.3
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 1.3e-19 99.4 51 86.3
BolC5t29003H Brassica oleracea HOM05D003167 ORTHO05D003929 1.3e-19 99.4 51 86.3
Ca_08942_v3 Cicer arietinum L. HOM05D003167 ORTHO05D003929 1.3e-19 99.4 51 84.3
Medtr1g061860 Medicago truncatula HOM05D003167 ORTHO05D003929 1.3e-19 99.4 51 84.3
SMO169G0108 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 1.3e-19 99.4 51 84.3
Thecc.06G013600 Theobroma cacao HOM05D003167 ORTHO05D003929 1.3e-19 99.4 51 86.3
AUR62040188 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.7e-19 99.0 51 82.4
AUR62042696 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.7e-19 99.0 51 82.4
PSO210G0575 Papaver somniferum HOM05D003167 ORTHO05D003929 2.2e-19 98.6 49 87.8
PSO339G0841 Papaver somniferum HOM05D003167 ORTHO05D003929 2.2e-19 98.6 49 87.8
AagrBONN_evm.TU.Sc2ySwM_344.2239 Anthoceros agrestis HOM05D003167 ORTHO05D003929 2.9e-19 98.2 51 82.4
Glyma.13G148300 Glycine max HOM05D003167 ORTHO05D003929 2.9e-19 98.2 51 84.3
MD14G1096200 Malus domestica HOM05D003167 ORTHO05D003929 2.9e-19 98.2 51 84.3
CAN.G1459.3 Capsicum annuum HOM05D003167 ORTHO05D003929 6.5e-19 97.1 51 82.4
ECA238G2918 Erigeron canadensis HOM05D003167 ORTHO05D003929 6.5e-19 97.1 51 80.4
HanXRQChr11g0325191 Helianthus annuus HOM05D003167 ORTHO05D003929 6.5e-19 97.1 51 80.4
Lsat_1_v5_gn_2_23140 Lactuca sativa HOM05D003167 ORTHO05D003929 6.5e-19 97.1 51 80.4
ECA232G4074 Erigeron canadensis HOM05D003167 ORTHO05D003929 1.4e-18 95.9 51 78.4
MSTRG.21603 Avicennia marina HOM05D003167 ORTHO05D003929 1.9e-18 95.5 51 84.3
Mapoly0001s0156 Marchantia polymorpha HOM05D003167 ORTHO05D003929 1.9e-18 95.5 51 80.4
BcaNung06144 Brassica carinata HOM05D003167 ORTHO05D003929 3.2e-18 94.7 51 82.4
MD12G1102100 Malus domestica HOM05D003167 ORTHO05D003929 5.5e-18 94.0 49 83.7
SHI27742 Sapria himalayana HOM05D003167 ORTHO05D003929 7.2e-18 93.6 52 80.8
BcaC05g24486 Brassica carinata HOM05D003167 ORTHO05D003929 1.2e-17 92.8 67 65.7
Pp3c27_420 Physcomitrium patens HOM05D003167 ORTHO05D003929 1.2e-17 92.8 51 76.5
Atru.chr8.1695 Acer truncatum HOM05D003167 ORTHO05D003929 2.7e-17 91.7 53 79.2
CBR_g4119 Chara braunii HOM05D003167 ORTHO05D003929 2.7e-17 91.7 51 78.4
ATR0724G050 Amborella trichopoda HOM05D003167 ORTHO05D003929 1.0e-16 89.7 50 76.0
Carub.0004s1866 Capsella rubella HOM05D003167 ORTHO05D003929 1.0e-16 89.7 50 80.0
Lj8P306T56 Lonicera japonica HOM05D003167 ORTHO05D003929 5.1e-16 87.4 49 79.6
Cc04_g07780 Coffea canephora HOM05D003167 ORTHO05D003929 1.9e-15 85.5 51 72.5
Nitab4.5_0000883g0040 Nicotiana tabacum HOM05D003167 ORTHO05D003929 1.9e-15 85.5 52 75.0
AL4G33010 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 3.3e-15 84.7 51 76.5
Cre09.g398650 Chlamydomonas reinhardtii HOM05D003167 ORTHO05D003929 9.7e-15 83.2 50 74.0
AUR62007182 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.2e-14 82.0 51 74.5
AUR62007183 Chenopodium quinoa HOM05D003167 ORTHO05D003929 6.3e-14 80.5 51 72.5
AUR62018820 Chenopodium quinoa HOM05D003167 ORTHO05D003929 6.3e-14 80.5 51 72.5
Hma1.2p1_0033F.1_g020920 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 1.4e-13 79.3 50 72.0
Potri.001G242900 Populus trichocarpa HOM05D003167 ORTHO05D003929 6.9e-13 77.0 51 68.6
Hma1.2p1_2996F.1_g331470 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 9.1e-13 76.6 50 70.0
Atru.chr10.2404 Acer truncatum HOM05D003167 ORTHO05D003929 2.6e-12 75.1 38 81.6
Aqoxy3G01613 Aquilegia oxysepala HOM05D003167 ORTHO05D000007 3.8e-11 71.2 48 70.8
EL10Ac3g06890 Beta vulgaris HOM05D003167 ORTHO05D003929 1.1e-10 69.7 54 63.0
SGA_v2.0_scaffold312G48279 Striga asiatica HOM05D003167 ORTHO05D003929 1.1e-10 69.7 51 64.7
SMO364G0524 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 1.9e-10 68.9 52 63.5
Thecc.08G192100 Theobroma cacao HOM05D003167 ORTHO05D003929 1.9e-10 68.9 41 75.6
Lj1P1240T21 Lonicera japonica HOM05D003167 ORTHO05D003929 2.5e-10 68.6 40 70.0
RcHm_v2.0_Chr2g0092191 Rosa chinensis HOM05D003167 ORTHO05D003929 2.5e-10 68.6 54 61.1
Aqoxy3G01485 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 3.2e-10 68.2 51 62.7
FAN23G0551 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.6e-09 65.9 52 63.5
FvH4_1g06450 Fragaria vesca HOM05D003167 ORTHO05D003929 2.1e-09 65.5 52 59.6
FAN19G3088 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.1e-09 65.5 52 59.6
FAN26G0867 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.0e-08 63.2 52 57.7
FAN26G2184 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.0e-08 63.2 52 57.7
Eucgr.D02277 Eucalyptus grandis HOM05D003167 ORTHO05D003929 2.0e-07 58.9 83 44.6
FAN28G1035 Fragaria x ananassa HOM05D003167 ORTHO05D003929 4.8e-06 54.3 49 53.1
Nitab4.5_0007768g0040 Nicotiana tabacum HOM05D003167 ORTHO05D003929 4.8e-06 54.3 27 85.2
Cfa022090 Carpinus fangiana HOM05D003167 ORTHO05D003929 6.3e-06 53.9 49 55.1


User provided reference genes

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