Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28940 Actinidia chinensis HOM05D003167 ORTHO05D030899 3.3e-40 167.9 85 100.0
Actinidia26630 Actinidia chinensis HOM05D003167 ORTHO05D003929 3.9e-33 144.4 82 89.0
vmacro07353 Vaccinium macrocarpon HOM05D003167 ORTHO05D003929 7.6e-29 130.2 83 80.7
Rhsim03G0085500 Rhododendron simsii HOM05D003167 ORTHO05D003929 2.9e-28 128.3 82 82.9
CSS0043785 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 1.1e-27 126.3 83 79.5
CSS0014862 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 4.2e-27 124.4 82 79.3
Dinv35839 Davidia involucrata HOM05D003167 ORTHO05D003929 6.7e-25 117.1 83 75.9
Hma1.2p1_0564F.1_g179130 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 1.5e-24 115.9 83 74.7
Gohir.A04G067800 Gossypium hirsutum HOM05D003167 ORTHO05D003929 1.2e-21 106.3 83 65.1
Cpa.g.sc5.120 Carica papaya HOM05D003167 ORTHO05D003929 2.6e-21 105.1 83 68.7
Haze_19497 Corylus avellana HOM05D003167 ORTHO05D003929 2.6e-21 105.1 82 67.1
Cfa016494 Carpinus fangiana HOM05D003167 ORTHO05D003929 7.6e-21 103.6 82 65.9
Manes.08G017200 Manihot esculenta HOM05D003167 ORTHO05D003929 2.2e-20 102.1 83 66.3
COL.COLO4_22264 Corchorus olitorius HOM05D003167 ORTHO05D003929 2.9e-20 101.7 86 62.8
Atru.chr8.1695 Acer truncatum HOM05D003167 ORTHO05D003929 3.8e-20 101.3 83 63.9
Prupe.7G122300 Prunus persica HOM05D003167 ORTHO05D003929 3.8e-20 101.3 82 65.9
QL07p041296 Quercus lobata HOM05D003167 ORTHO05D003929 3.8e-20 101.3 80 68.8
Thecc.05G076300 Theobroma cacao HOM05D003167 ORTHO05D003929 6.5e-20 100.5 83 63.9
CiPaw.10G002600 Carya illinoinensis HOM05D003167 ORTHO05D003929 8.4e-20 100.1 83 67.5
Sopen10g034860 Solanum pennellii HOM05D003167 ORTHO05D003929 8.4e-20 100.1 83 66.3
Gorai.009G410400 Gossypium raimondii HOM05D003167 ORTHO05D003929 1.1e-19 99.8 83 61.4
Solyc10g085410.3 Solanum lycopersicum HOM05D003167 ORTHO05D003929 1.9e-19 99.0 83 65.1
DCAR_020795 Daucus carota HOM05D003167 ORTHO05D003929 2.5e-19 98.6 89 62.9
COL.COLO4_17620 Corchorus olitorius HOM05D003167 ORTHO05D003929 3.2e-19 98.2 83 63.9
Potri.006G118700 Populus trichocarpa HOM05D003167 ORTHO05D003929 3.2e-19 98.2 83 63.9
Aqoxy1G01022 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 4.2e-19 97.8 82 63.4
Peaxi162Scf01089g10011 Petunia axillaris HOM05D003167 ORTHO05D003929 5.5e-19 97.4 83 62.7
Gohir.D04G106400 Gossypium hirsutum HOM05D003167 ORTHO05D003929 7.1e-19 97.1 80 62.5
CAN.G738.3 Capsicum annuum HOM05D003167 ORTHO05D003929 1.2e-18 96.3 83 66.3
Phvul.001G184000 Phaseolus vulgaris HOM05D003167 ORTHO05D003929 1.6e-18 95.9 72 63.9
PGSC0003DMG400040194 Solanum tuberosum HOM05D003167 ORTHO05D003929 1.6e-18 95.9 83 63.9
Sc01g0003900 Simmondsia chinensis HOM05D003167 ORTHO05D003929 2.1e-18 95.5 91 63.7
TPR.G31678 Trifolium pratense HOM05D003167 ORTHO05D003929 2.1e-18 95.5 84 59.5
TAR623G0013 Trochodendron aralioides HOM05D003167 ORTHO05D003929 2.1e-18 95.5 83 61.4
VMungo1383G0302 Vigna mungo HOM05D003167 ORTHO05D003929 2.1e-18 95.5 87 59.8
arahy.Tifrunner.gnm1.ann1.P92TZX Arachis hypogaea HOM05D003167 ORTHO05D003929 2.7e-18 95.1 82 59.8
arahy.Tifrunner.gnm1.ann1.WY8M22 Arachis hypogaea HOM05D003167 ORTHO05D003929 2.7e-18 95.1 82 59.8
Sabra06G0093300 Salix brachista HOM05D003167 ORTHO05D003929 2.7e-18 95.1 83 62.7
Aqoxy1G01021 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 3.5e-18 94.7 82 61.0
Ca_08942_v3 Cicer arietinum L. HOM05D003167 ORTHO05D003929 3.5e-18 94.7 84 60.7
THA.LOC104816364 Tarenaya hassleriana HOM05D003167 ORTHO05D003929 3.5e-18 94.7 83 57.8
Medtr7g102700 Medicago truncatula HOM05D003167 ORTHO05D003929 4.6e-18 94.4 91 59.3
Duzib093G1992 Durio zibethinus HOM05D003167 ORTHO05D003929 6.0e-18 94.0 83 61.4
GSVIVG01033725001 Vitis vinifera HOM05D003167 ORTHO05D003929 6.0e-18 94.0 83 63.9
TAR636G1269 Trochodendron aralioides HOM05D003167 ORTHO05D003929 1.0e-17 93.2 83 60.2
Glyma.03G188600 Glycine max HOM05D003167 ORTHO05D003929 1.3e-17 92.8 84 58.3
Psat3g037760 Pisum sativum HOM05D003167 ORTHO05D003929 1.3e-17 92.8 84 59.5
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 1.8e-17 92.4 86 60.5
Glyma.19G188800 Glycine max HOM05D003167 ORTHO05D003929 2.3e-17 92.0 84 58.3
Ciclev10011207m.g Citrus clementina HOM05D003167 ORTHO05D003929 1.1e-16 89.7 84 61.9
Lsat_1_v5_gn_2_23140 Lactuca sativa HOM05D003167 ORTHO05D003929 1.1e-16 89.7 70 65.7
TPR.G27088 Trifolium pratense HOM05D003167 ORTHO05D003929 1.5e-16 89.4 85 56.5
Cc00_g14960 Coffea canephora HOM05D003167 ORTHO05D003929 1.9e-16 89.0 84 58.3
Cc10_g12700 Coffea canephora HOM05D003167 ORTHO05D003929 1.9e-16 89.0 84 58.3
Lj3C1008T14 Lonicera japonica HOM05D003167 ORTHO05D003929 1.9e-16 89.0 86 60.5
CANSAT80G1311 Cannabis sativa HOM05D003167 ORTHO05D003929 2.5e-16 88.6 86 59.3
MD14G1096200 Malus domestica HOM05D003167 ORTHO05D003929 3.3e-16 88.2 80 61.2
Thecc.06G013600 Theobroma cacao HOM05D003167 ORTHO05D003929 3.3e-16 88.2 82 58.5
Zm00001eb061170 Zea mays HOM05D003167 ORTHO05D003929 3.3e-16 88.2 82 54.9
Peaxi162Scf00732g00028 Petunia axillaris HOM05D003167 ORTHO05D003929 4.3e-16 87.8 84 60.7
RcHm_v2.0_Chr3g0471451 Rosa chinensis HOM05D003167 ORTHO05D003929 4.3e-16 87.8 82 58.5
Glyma.13G148300 Glycine max HOM05D003167 ORTHO05D003929 5.7e-16 87.4 85 57.6
Eucgr.K02416 Eucalyptus grandis HOM05D003167 ORTHO05D003929 7.4e-16 87.0 82 59.8
FvH4_6g17312 Fragaria vesca HOM05D003167 ORTHO05D003929 7.4e-16 87.0 82 56.1
FAN14G2907 Fragaria x ananassa HOM05D003167 ORTHO05D003929 7.4e-16 87.0 82 56.1
MSTRG.21603 Avicennia marina HOM05D003167 ORTHO05D003929 9.7e-16 86.7 75 62.7
Lalb_Chr25g0288761 Lupinus albus HOM05D003167 ORTHO05D003929 9.7e-16 86.7 90 51.1
Aa31LG1G9100 Aethionema arabicum HOM05D003167 ORTHO05D003929 1.3e-15 86.3 82 58.5
Medtr1g061860 Medicago truncatula HOM05D003167 ORTHO05D003929 2.2e-15 85.5 83 56.6
Sp1g02770 Schrenkiella parvula HOM05D003167 ORTHO05D003929 2.2e-15 85.5 87 58.6
FAN02G2003 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.8e-15 85.1 82 54.9
FAN05G3544 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.8e-15 85.1 82 53.7
FAN05G3981 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.8e-15 85.1 82 53.7
FAN05G5009 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.8e-15 85.1 82 53.7
Lalb_Chr21g0315291 Lupinus albus HOM05D003167 ORTHO05D003929 2.8e-15 85.1 69 62.3
AL1G13510 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 3.7e-15 84.7 87 58.6
PGR142G4079 Punica granatum HOM05D003167 ORTHO05D003929 3.7e-15 84.7 83 56.6
Hund04098 Selenicereus undatus HOM05D003167 ORTHO05D003929 3.7e-15 84.7 83 59.0
AT1G03910 Arabidopsis thaliana HOM05D003167 ORTHO05D003929 4.8e-15 84.3 87 57.5
Psat6g078080 Pisum sativum HOM05D003167 ORTHO05D003929 4.8e-15 84.3 86 57.0
SalBow8G1467 Salvia bowleyana HOM05D003167 ORTHO05D003929 4.8e-15 84.3 66 66.7
SalBow8G3947 Salvia bowleyana HOM05D003167 ORTHO05D003929 4.8e-15 84.3 66 66.7
BolC8t52784H Brassica oleracea HOM05D003167 ORTHO05D003929 6.3e-15 84.0 90 54.4
Carub.0001s0306 Capsella rubella HOM05D003167 ORTHO05D003929 6.3e-15 84.0 88 56.8
HanXRQChr11g0325191 Helianthus annuus HOM05D003167 ORTHO05D003929 8.2e-15 83.6 71 60.6
Thecc.08G192100 Theobroma cacao HOM05D003167 ORTHO05D003929 8.2e-15 83.6 60 66.7
Migut.G00710 Erythranthe guttata HOM05D003167 ORTHO05D003929 1.1e-14 83.2 79 58.2
Lj8P306T56 Lonicera japonica HOM05D003167 ORTHO05D003929 1.1e-14 83.2 83 60.2
C08p52570 Brassica napus HOM05D003167 ORTHO05D003929 1.8e-14 82.4 89 53.9
VMungo0720G2588 Vigna mungo HOM05D003167 ORTHO05D003929 1.8e-14 82.4 89 55.1
BraA09t42148Z Brassica rapa HOM05D003167 ORTHO05D003929 3.1e-14 81.6 88 58.0
PSO339G0841 Papaver somniferum HOM05D003167 ORTHO05D003929 4.1e-14 81.3 84 52.4
CARHR003250 Cardamine hirsuta HOM05D003167 ORTHO05D003929 5.3e-14 80.9 87 54.0
ClCG10G019590 Citrullus lanatus HOM05D003167 ORTHO05D003929 5.3e-14 80.9 86 53.5
Thhalv10006994m.g Eutrema salsugineum HOM05D003167 ORTHO05D003929 5.3e-14 80.9 88 54.5
EL10Ac7g16722 Beta vulgaris HOM05D003167 ORTHO05D003929 6.9e-14 80.5 82 56.1
A09p68130 Brassica napus HOM05D003167 ORTHO05D003929 6.9e-14 80.5 88 54.5
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 6.9e-14 80.5 87 57.5
MELO3C009413.2 Cucumis melo HOM05D003167 ORTHO05D003929 6.9e-14 80.5 86 53.5
CsaV3_3G036590 Cucumis sativus L. HOM05D003167 ORTHO05D003929 6.9e-14 80.5 86 51.2
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 9.0e-14 80.1 87 57.5
BolC5t29003H Brassica oleracea HOM05D003167 ORTHO05D003929 9.0e-14 80.1 87 57.5
RcHm_v2.0_Chr3g0471601 Rosa chinensis HOM05D003167 ORTHO05D030899 9.0e-14 80.1 82 52.4
AUR62040188 Chenopodium quinoa HOM05D003167 ORTHO05D003929 7.7e-13 77.0 83 54.2
AUR62042696 Chenopodium quinoa HOM05D003167 ORTHO05D003929 7.7e-13 77.0 83 54.2
BcaC07g42222 Brassica carinata HOM05D003167 ORTHO05D003929 1.0e-12 76.6 75 60.0
BcaC05g24486 Brassica carinata HOM05D003167 ORTHO05D003929 1.7e-12 75.9 87 56.3
ATR0724G050 Amborella trichopoda HOM05D003167 ORTHO05D003929 2.2e-12 75.5 82 50.0
ECA238G2918 Erigeron canadensis HOM05D003167 ORTHO05D003929 2.2e-12 75.5 73 56.2
Ah.15g091340 Amaranthus hybridus HOM05D003167 ORTHO05D003929 3.8e-12 74.7 82 53.7
Sed0027110 Sechium edule HOM05D003167 ORTHO05D003929 5.0e-12 74.3 74 54.1
Oeu027192.1 Olea europaea HOM05D003167 ORTHO05D003929 6.5e-12 73.9 88 52.3
PSO210G0575 Papaver somniferum HOM05D003167 ORTHO05D003929 6.5e-12 73.9 81 53.1
HPP92_017793 Vanilla planifolia HOM05D003167 ORTHO05D003929 6.5e-12 73.9 64 53.1
MD12G1102100 Malus domestica HOM05D003167 ORTHO05D003929 1.9e-11 72.4 80 56.2
SGA_v2.0_scaffold312G48279 Striga asiatica HOM05D003167 ORTHO05D003929 4.2e-11 71.2 71 54.9
Nitab4.5_0002027g0020 Nicotiana tabacum HOM05D003167 ORTHO05D003929 2.7e-10 68.6 83 50.6
unitig_578.g16659 Utricularia gibba HOM05D003167 ORTHO05D003929 6.1e-10 67.4 83 45.8
AagrBONN_evm.TU.Sc2ySwM_344.2239 Anthoceros agrestis HOM05D003167 ORTHO05D003929 1.0e-09 66.6 44 70.5
Pp3c27_420 Physcomitrium patens HOM05D003167 ORTHO05D003929 1.0e-09 66.6 88 47.7
Mapoly0001s0156 Marchantia polymorpha HOM05D003167 ORTHO05D003929 1.4e-09 66.2 91 46.2
SHI27742 Sapria himalayana HOM05D003167 ORTHO05D003929 3.9e-09 64.7 84 50.0
Carub.0004s1866 Capsella rubella HOM05D003167 ORTHO05D003929 1.1e-08 63.2 87 44.8
Eucgr.D02277 Eucalyptus grandis HOM05D003167 ORTHO05D003929 2.5e-08 62.0 64 51.6
SEGI_34935 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 3.3e-08 61.6 56 57.1
Hma1.2p1_0033F.1_g020940 Hydrangea macrophylla HOM05D003167 ORTHO05D023710 4.3e-08 61.2 41 73.2
CBR_g4119 Chara braunii HOM05D003167 ORTHO05D003929 5.7e-08 60.8 45 62.2
CDE04G1328 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 7.4e-08 60.5 70 50.0
SMO169G0108 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 2.2e-07 58.9 89 38.2
Hma1.2p1_2996F.1_g331470 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 2.8e-07 58.5 44 65.9
Cc04_g07780 Coffea canephora HOM05D003167 ORTHO05D003929 3.7e-07 58.2 84 41.7
AL4G33010 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 4.8e-07 57.8 79 41.8
AUR62007182 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.1e-06 56.6 66 48.5
AUR62007183 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.1e-06 56.6 66 48.5
Nitab4.5_0000883g0030 Nicotiana tabacum HOM05D003167 ORTHO05D023710 1.4e-06 56.2 90 40.0
CARHR131270 Cardamine hirsuta HOM05D003167 ORTHO05D003929 1.8e-06 55.8 41 61.0


User provided reference genes

Program Settings