Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28929 Actinidia chinensis HOM05D003470 ORTHO05D004157 4.6e-218 761.1 447 100.0
Actinidia26639 Actinidia chinensis HOM05D003470 ORTHO05D004157 2.1e-178 629.4 451 85.8
CSS0007947 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 2.3e-148 529.6 451 74.1
CSS0012208 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 6.6e-148 528.1 451 74.1
Dinv37350 Davidia involucrata HOM05D003470 ORTHO05D004157 6.2e-130 468.4 502 62.0
Rhsim03G0087000 Rhododendron simsii HOM05D003470 ORTHO05D004157 2.0e-120 436.8 447 60.9
TAR369G0117 Trochodendron aralioides HOM05D003470 ORTHO05D004157 8.2e-106 388.3 519 48.6
TAR623G0591 Trochodendron aralioides HOM05D003470 ORTHO05D004157 2.6e-104 383.3 518 48.1
Prupe.7G123700 Prunus persica HOM05D003470 ORTHO05D004157 2.9e-103 379.8 519 47.4
Thecc.05G074600 Theobroma cacao HOM05D003470 ORTHO05D004157 1.6e-98 364.0 437 49.4
GSVIVG01033709001 Vitis vinifera HOM05D003470 ORTHO05D004157 4.8e-98 362.5 507 46.9
TAR633G0390 Trochodendron aralioides HOM05D003470 ORTHO05D004157 2.6e-96 356.7 508 45.5
Nn2g13883 Nelumbo nucifera HOM05D003470 ORTHO05D004157 1.1e-94 351.3 514 48.8
QL07p041535 Quercus lobata HOM05D003470 ORTHO05D004157 3.2e-94 349.7 519 46.2
MD12G1103600 Malus domestica HOM05D003470 ORTHO05D004157 5.5e-94 349.0 511 44.6
Aqoxy1G01047 Aquilegia oxysepala HOM05D003470 ORTHO05D004157 7.2e-94 348.6 470 47.4
PSO339G3515 Papaver somniferum HOM05D003470 ORTHO05D004157 7.2e-94 348.6 471 47.6
RcHm_v2.0_Chr3g0471201 Rosa chinensis HOM05D003470 ORTHO05D004157 1.6e-93 347.4 493 47.5
MD14G1098000 Malus domestica HOM05D003470 ORTHO05D004157 7.9e-93 345.1 517 44.9
TWI74G0295 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 3.0e-92 343.2 462 47.2
PSO063G0006 Papaver somniferum HOM05D003470 ORTHO05D004157 6.7e-92 342.0 471 46.9
Nitab4.5_0004731g0020 Nicotiana tabacum HOM05D003470 ORTHO05D004157 8.8e-92 341.7 450 49.1
GSVIVG01016161001 Vitis vinifera HOM05D003470 ORTHO05D004157 2.0e-91 340.5 471 51.6
Atru.chr8.1716 Acer truncatum HOM05D003470 ORTHO05D004157 2.2e-90 337.0 465 46.7
Potri.008G029800 Populus trichocarpa HOM05D003470 ORTHO05D004157 4.8e-90 335.9 474 46.8
Haze_19469 Corylus avellana HOM05D003470 ORTHO05D004157 3.4e-88 329.7 520 44.6
Sabra08G0020000 Salix brachista HOM05D003470 ORTHO05D004157 5.9e-88 328.9 474 47.0
Thecc.10G090100 Theobroma cacao HOM05D003470 ORTHO05D004157 3.8e-87 326.2 474 47.3
Nitab4.5_0003906g0030 Nicotiana tabacum HOM05D003470 ORTHO05D004157 1.4e-86 324.3 453 47.2
MSTRG.19203 Avicennia marina HOM05D003470 ORTHO05D004157 1.9e-86 323.9 451 51.9
Duzib128G1576 Durio zibethinus HOM05D003470 ORTHO05D004157 2.5e-86 323.6 445 48.1
CiPaw.10G002200 Carya illinoinensis HOM05D003470 ORTHO05D004157 5.5e-86 322.4 507 43.6
Potri.006G120400 Populus trichocarpa HOM05D003470 ORTHO05D004157 1.2e-85 321.2 456 46.1
Duzib114G1051 Durio zibethinus HOM05D003470 ORTHO05D004157 2.1e-85 320.5 478 46.0
COL.COLO4_32876 Corchorus olitorius HOM05D003470 ORTHO05D004157 4.7e-85 319.3 472 46.8
Gohir.A09G143900 Gossypium hirsutum HOM05D003470 ORTHO05D004157 3.0e-84 316.6 456 45.8
FAN05G3818 Fragaria x ananassa HOM05D003470 ORTHO05D004157 8.8e-84 315.1 523 42.8
FAN05G4328 Fragaria x ananassa HOM05D003470 ORTHO05D004157 8.8e-84 315.1 523 42.8
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 1.5e-83 314.3 439 47.6
Duzib093G1940 Durio zibethinus HOM05D003470 ORTHO05D004157 1.7e-82 310.8 456 49.6
Duzib106G0260 Durio zibethinus HOM05D003470 ORTHO05D004157 4.8e-82 309.3 476 45.0
Sopen09g003360 Solanum pennellii HOM05D003470 ORTHO05D004157 4.8e-82 309.3 492 43.1
Sabra06G0094700 Salix brachista HOM05D003470 ORTHO05D004157 1.1e-81 308.1 456 45.0
Nn6g35185 Nelumbo nucifera HOM05D003470 ORTHO05D004157 1.8e-81 307.4 518 41.1
Gohir.A10G200100 Gossypium hirsutum HOM05D003470 ORTHO05D004157 3.1e-81 306.6 476 44.3
Solyc09g008530.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 9.1e-81 305.1 492 42.3
FAN09G0366 Fragaria x ananassa HOM05D003470 ORTHO05D004157 1.5e-80 304.3 522 42.3
Manes.08G016800 Manihot esculenta HOM05D003470 ORTHO05D004157 3.5e-80 303.1 453 45.0
Gorai.006G160300 Gossypium raimondii HOM05D003470 ORTHO05D004157 4.5e-80 302.8 458 44.8
Ciclev10033678m.g Citrus clementina HOM05D003470 ORTHO05D004157 3.2e-78 296.6 503 42.7
PGSC0003DMG400003903 Solanum tuberosum HOM05D003470 ORTHO05D004157 2.1e-77 293.9 492 41.3
vmacro07330 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 6.7e-76 288.9 456 51.5
Glyma.13G147300 Glycine max HOM05D003470 ORTHO05D004157 2.0e-75 287.3 500 45.6
Lsat_1_v5_gn_6_28040 Lactuca sativa HOM05D003470 ORTHO05D004157 5.7e-75 285.8 448 42.6
CiPaw.09G004500 Carya illinoinensis HOM05D003470 ORTHO05D004157 1.3e-74 284.6 497 41.9
ECA238G1102 Erigeron canadensis HOM05D003470 ORTHO05D004157 2.8e-74 283.5 459 41.6
ECA233G0686 Erigeron canadensis HOM05D003470 ORTHO05D004157 3.7e-74 283.1 448 43.5
Manes.10G053000 Manihot esculenta HOM05D003470 ORTHO05D004157 8.2e-74 282.0 470 42.8
Sc20g0001480 Simmondsia chinensis HOM05D003470 ORTHO05D004157 1.8e-73 280.8 468 40.8
SalBow3G0781 Salvia bowleyana HOM05D003470 ORTHO05D004157 2.4e-73 280.4 454 44.5
Gohir.D09G139850 Gossypium hirsutum HOM05D003470 ORTHO05D004157 3.1e-73 280.0 425 44.7
TWI38G0957 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 6.5e-71 272.3 454 42.7
Glyma.10G062800 Glycine max HOM05D003470 ORTHO05D004157 8.5e-71 271.9 504 40.5
FvH4_6g17113 Fragaria vesca HOM05D003470 ORTHO05D004157 1.9e-70 270.8 523 39.6
Migut.J00469 Erythranthe guttata HOM05D003470 ORTHO05D004157 2.1e-69 267.3 450 40.7
Lj3C994T12 Lonicera japonica HOM05D003470 ORTHO05D004157 6.1e-69 265.8 466 48.3
Phvul.007G226600 Phaseolus vulgaris HOM05D003470 ORTHO05D004157 8.0e-69 265.4 492 41.1
FAN14G5641 Fragaria x ananassa HOM05D003470 ORTHO05D004157 2.3e-68 263.8 523 39.0
HanXRQChr08g0218281 Helianthus annuus HOM05D003470 ORTHO05D004157 3.4e-67 260.0 453 39.7
CSS0002390 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 7.5e-67 258.8 504 37.9
Actinidia18557 Actinidia chinensis HOM05D003470 ORTHO05D004157 5.3e-65 252.7 475 38.9
Ca_11537_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 5.3e-65 252.7 504 43.1
COL.COLO4_22242 Corchorus olitorius HOM05D003470 ORTHO05D004157 1.6e-64 251.1 406 42.6
DCAR_006389 Daucus carota HOM05D003470 ORTHO05D004157 7.7e-64 248.8 463 40.0
Gorai.011G233700 Gossypium raimondii HOM05D003470 ORTHO05D004157 5.0e-63 246.1 477 39.0
Oeu026700.1 Olea europaea HOM05D003470 ORTHO05D004157 8.5e-63 245.4 370 50.5
Gohir.D10G208000 Gossypium hirsutum HOM05D003470 ORTHO05D004157 3.6e-61 240.0 476 38.7
Hund06764 Selenicereus undatus HOM05D003470 ORTHO05D004157 5.7e-59 232.6 462 39.2
CANSAT78G0551 Cannabis sativa HOM05D003470 ORTHO05D004157 4.1e-57 226.5 483 37.7
HPP92_008497 Vanilla planifolia HOM05D003470 ORTHO05D004157 7.0e-57 225.7 460 37.4
Medtr1g062200 Medicago truncatula HOM05D003470 ORTHO05D004157 1.2e-56 224.9 483 40.6
Cc06_g04710 Coffea canephora HOM05D003470 ORTHO05D004157 2.7e-56 223.8 456 43.0
TPR.G22446 Trifolium pratense HOM05D003470 ORTHO05D004157 1.0e-55 221.9 480 39.8
vmacro07200 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 5.0e-55 219.5 514 33.9
Lj5g0020068 Lotus japonicus HOM05D003470 ORTHO05D004157 8.6e-55 218.8 507 38.9
Cpa.g.sc5.136 Carica papaya HOM05D003470 ORTHO05D004157 1.5e-54 218.0 376 41.8
AUR62035493 Chenopodium quinoa HOM05D003470 ORTHO05D004157 1.5e-54 218.0 469 35.4
Cpa.g.sc53.171 Carica papaya HOM05D003470 ORTHO05D004157 2.5e-54 217.2 406 40.4
Rhsim03G0111500 Rhododendron simsii HOM05D003470 ORTHO05D004157 2.1e-53 214.2 463 35.9
Zm00001eb404310 Zea mays HOM05D003470 ORTHO05D004157 3.0e-52 210.3 452 35.4
Peaxi162Scf00138g00213 Petunia axillaris HOM05D003470 ORTHO05D004157 2.0e-51 207.6 489 34.4
HanXRQChr14g0456131 Helianthus annuus HOM05D003470 ORTHO05D004157 7.5e-51 205.7 427 36.8
Zm00001eb000590 Zea mays HOM05D003470 ORTHO05D004157 1.7e-50 204.5 452 35.4
Haze_16780 Corylus avellana HOM05D003470 ORTHO05D004157 2.8e-50 203.8 373 38.9
MELO3C009401.2 Cucumis melo HOM05D003470 ORTHO05D004157 2.8e-50 203.8 506 33.8
CsaV3_3G036530 Cucumis sativus L. HOM05D003470 ORTHO05D004157 2.4e-49 200.7 506 33.8
Sc06g0002130 Simmondsia chinensis HOM05D003470 ORTHO05D004157 7.8e-48 195.7 394 36.5
PSO478G4813 Papaver somniferum HOM05D003470 ORTHO05D004157 1.0e-47 195.3 234 48.7
arahy.Tifrunner.gnm1.ann1.8W3QW7 Arachis hypogaea HOM05D003470 ORTHO05D004157 1.3e-47 194.9 505 36.4
arahy.Tifrunner.gnm1.ann1.FKX1H2 Arachis hypogaea HOM05D003470 ORTHO05D004157 1.3e-47 194.9 505 36.4
Eucgr.A01602 Eucalyptus grandis HOM05D003470 ORTHO05D004157 2.3e-47 194.1 556 33.6
Lsat_1_v5_gn_2_103301 Lactuca sativa HOM05D003470 ORTHO05D004157 1.5e-46 191.4 421 36.8
CAN.G1038.4 Capsicum annuum HOM05D003470 ORTHO05D004157 4.3e-46 189.9 546 36.8
Haze_16781 Corylus avellana HOM05D003470 ORTHO05D004157 4.3e-46 189.9 352 39.5
Atru.chr12.915 Acer truncatum HOM05D003470 ORTHO05D004157 9.5e-46 188.7 401 37.2
Ca_11528_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 9.5e-46 188.7 464 34.9
Eucgr.G02735 Eucalyptus grandis HOM05D003470 ORTHO05D004157 4.0e-44 183.3 490 32.4
ClCG10G019700 Citrullus lanatus HOM05D003470 ORTHO05D004157 5.2e-44 183.0 461 34.7
PGR142G1299 Punica granatum HOM05D003470 ORTHO05D004157 1.3e-42 178.3 354 37.0
Sed0013053 Sechium edule HOM05D003470 ORTHO05D004157 1.4e-41 174.9 449 33.6
ECA233G4972 Erigeron canadensis HOM05D003470 ORTHO05D004157 3.2e-41 173.7 458 34.5
HanXRQChr13g0400491 Helianthus annuus HOM05D003470 ORTHO05D004157 2.5e-38 164.1 317 39.1
CDE03G0074 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 1.4e-36 158.3 512 31.2
CDE06G1109 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 1.4e-36 158.3 516 31.0
Sed0009504 Sechium edule HOM05D003470 ORTHO05D004157 1.8e-36 157.9 332 34.9
Dinv31268 Davidia involucrata HOM05D003470 ORTHO05D004157 3.1e-36 157.1 204 48.5
Sed0006633 Sechium edule HOM05D003470 ORTHO05D004157 9.8e-35 152.1 448 31.7
ClCG08G007930 Citrullus lanatus HOM05D003470 ORTHO05D004157 3.7e-34 150.2 316 35.4
HanXRQChr07g0186251 Helianthus annuus HOM05D003470 ORTHO05D004157 4.9e-34 149.8 405 34.6
Medtr1g090807 Medicago truncatula HOM05D003470 ORTHO05D004157 8.3e-34 149.1 281 37.0
ATR0043G047 Amborella trichopoda HOM05D003470 ORTHO05D004157 2.4e-33 147.5 526 28.5
Glyma.10G198700 Glycine max HOM05D003470 ORTHO05D004157 5.4e-33 146.4 276 36.2
TPR.G37812 Trifolium pratense HOM05D003470 ORTHO05D004157 1.2e-32 145.2 305 36.4
Ca_10457_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 2.7e-32 144.1 317 35.3
Lj5g0018822 Lotus japonicus HOM05D003470 ORTHO05D004157 2.7e-32 144.1 305 34.1
Psat6g173600 Pisum sativum HOM05D003470 ORTHO05D004157 4.6e-32 143.3 307 34.5
VMungo0720G1037 Vigna mungo HOM05D003470 ORTHO05D004157 8.6e-31 139.0 335 33.4
Zm00001eb391920 Zea mays HOM05D003470 ORTHO05D004157 1.1e-30 138.7 448 27.2
Phvul.007G145600 Phaseolus vulgaris HOM05D003470 ORTHO05D004157 1.9e-30 137.9 337 32.9
Nitab4.5_0000255g0010 Nicotiana tabacum HOM05D003470 ORTHO05D004157 3.3e-30 137.1 398 30.7
Lj3A935T49 Lonicera japonica HOM05D003470 ORTHO05D004157 4.7e-29 133.3 382 33.0
Nitab4.5_0000593g0330 Nicotiana tabacum HOM05D003470 ORTHO05D004157 1.1e-28 132.1 400 31.5
SGA_v2.0_scaffold40G15455 Striga asiatica HOM05D003470 ORTHO05D003317 1.8e-28 131.3 390 32.3
CAN.G135.27 Capsicum annuum HOM05D003470 ORTHO05D004157 5.8e-27 126.3 408 29.9
SEGI_27097 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 5.8e-27 126.3 441 32.2
CDE02G1862 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 4.1e-25 120.2 207 44.0
Sopen11g003760 Solanum pennellii HOM05D003470 ORTHO05D004157 7.1e-25 119.4 477 28.5
Solyc11g007900.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 4.6e-24 116.7 477 28.3
QL12p036511 Quercus lobata HOM05D000176 ORTHO05D000106 7.8e-24 115.9 131 54.2
QL02p062649 Quercus lobata HOM05D000176 ORTHO05D000106 5.1e-23 113.2 191 43.5
Psat6g076760 Pisum sativum HOM05D003470 ORTHO05D004157 1.5e-22 111.7 271 35.1
Lalb_Chr02g0151131 Lupinus albus HOM05D003470 ORTHO05D004157 9.6e-22 109.0 314 29.0
Lsat_1_v5_gn_8_17720 Lactuca sativa HOM05D003470 ORTHO05D004157 8.1e-21 105.9 286 35.7
Os10g0547000 Oryza sativa ssp. japonica HOM05D003470 ORTHO05D004157 1.1e-20 105.5 475 26.3
Migut.F01673 Erythranthe guttata HOM05D003470 ORTHO05D004157 8.9e-20 102.4 315 28.6
unitig_27.g25387 Utricularia gibba HOM05D003470 ORTHO05D004157 1.5e-19 101.7 446 25.3
VMungo0720G2647 Vigna mungo HOM05D003470 ORTHO05D000001 4.4e-19 100.1 428 29.2
Dinv31267 Davidia involucrata HOM05D003470 ORTHO05D004157 1.9e-17 94.7 162 40.7
SEGI_39816 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 2.4e-17 94.4 323 27.9
AUR62019445 Chenopodium quinoa HOM05D002464 ORTHO05D002530 4.2e-17 93.6 157 35.0
SalBow6G0046 Salvia bowleyana HOM05D003470 ORTHO05D004157 1.6e-16 91.7 434 26.7
Peaxi162Scf00543g00019 Petunia axillaris HOM05D003470 ORTHO05D004157 3.9e-15 87.0 321 29.0
Medtr6g014000 Medicago truncatula HOM05D000027 ORTHO05D004157 5.6e-14 83.2 115 42.6
arahy.Tifrunner.gnm1.ann1.08YI9Q Arachis hypogaea HOM05D003470 ORTHO05D004157 7.3e-14 82.8 145 39.3
SEGI_03196 Sequoiadendron giganteum HOM05D004450 ORTHO05D022914 4.0e-12 77.0 109 43.1
SEGI_32626 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 1.2e-11 75.5 73 57.5
Pp3c17_1340 Physcomitrium patens HOM05D001888 ORTHO05D001842 2.0e-11 74.7 403 28.5
SEGI_12183 Sequoiadendron giganteum HOM05D001888 ORTHO05D001842 4.4e-11 73.6 582 21.3
SEGI_22593 Sequoiadendron giganteum HOM05D001888 ORTHO05D001842 4.4e-11 73.6 582 21.3
SMO301G0074 Selaginella moellendorffii HOM05D004450 ORTHO05D004157 1.4e-09 68.6 532 25.0
Ca_26313_v3 Cicer arietinum L. HOM05D004450 ORTHO05D005491 1.9e-09 68.2 103 42.7
Migut.C00198 Erythranthe guttata HOM05D004450 ORTHO05D005491 9.3e-09 65.9 464 25.0
AagrBONN_evm.TU.Sc2ySwM_344.3028 Anthoceros agrestis HOM05D003470 ORTHO05D004157 2.7e-08 64.3 340 26.2
arahy.Tifrunner.gnm1.ann1.T35Q4E Arachis hypogaea HOM05D004450 ORTHO05D005491 2.7e-08 64.3 437 25.4
Lj8A233T58 Lonicera japonica HOM05D001888 ORTHO05D001842 4.6e-08 63.5 467 23.6
arahy.Tifrunner.gnm1.ann1.KN8WKR Arachis hypogaea HOM05D004450 ORTHO05D005491 6.0e-08 63.2 437 25.2
Psat5g136520 Pisum sativum HOM05D004450 ORTHO05D005491 1.3e-07 62.0 103 39.8
AUR62010611 Chenopodium quinoa HOM05D001888 ORTHO05D001842 2.3e-07 61.2 494 23.5
CiPaw.05G231800 Carya illinoinensis HOM05D004450 ORTHO05D005491 5.1e-07 60.1 107 40.2
Eucgr.A02791 Eucalyptus grandis HOM05D001888 ORTHO05D001842 5.1e-07 60.1 456 24.6
Pp3c5_9840 Physcomitrium patens HOM05D024262 ORTHO05D022914 3.3e-06 57.4 183 32.2
RcHm_v2.0_Chr7g0240181 Rosa chinensis HOM05D004450 ORTHO05D005491 4.3e-06 57.0 107 37.4
CANSAT25G3861 Cannabis sativa HOM05D004450 ORTHO05D005491 5.6e-06 56.6 107 37.4
FAN04G1322 Fragaria x ananassa HOM05D004450 ORTHO05D005491 5.6e-06 56.6 107 37.4
Prupe.1G510000 Prunus persica HOM05D004450 ORTHO05D005491 5.6e-06 56.6 107 37.4
Sabra03G0088100 Salix brachista HOM05D001888 ORTHO05D001842 5.6e-06 56.6 507 20.3
SMO270G0011 Selaginella moellendorffii HOM05D001888 ORTHO05D001842 5.6e-06 56.6 458 23.6
TPR.G28951 Trifolium pratense HOM05D004450 ORTHO05D005491 5.6e-06 56.6 188 28.7
AT1G63300 Arabidopsis thaliana HOM05D001888 ORTHO05D001842 9.6e-06 55.8 476 21.6
SalBow1G3630 Salvia bowleyana HOM05D001888 ORTHO05D001842 9.6e-06 55.8 459 22.4


User provided reference genes

Program Settings