Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28926 Actinidia chinensis HOM05D003842 ORTHO05D004436 1.0e-81 306.6 148 100.0
Rhsim03G0088500 Rhododendron simsii HOM05D003842 ORTHO05D004436 8.5e-68 260.4 139 89.9
CSS0021824 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 1.8e-65 252.7 139 85.6
CSS0023266 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 1.8e-65 252.7 139 85.6
Dinv35821 Davidia involucrata HOM05D003842 ORTHO05D004436 1.6e-58 229.6 138 79.7
Manes.08G013802 Manihot esculenta HOM05D003842 ORTHO05D004436 1.2e-56 223.4 139 77.7
Atru.chr8.1720 Acer truncatum HOM05D003842 ORTHO05D004436 2.8e-55 218.8 139 75.5
GSVIVG01033696001 Vitis vinifera HOM05D003842 ORTHO05D004436 2.8e-55 218.8 139 74.8
Thecc.05G072900 Theobroma cacao HOM05D003842 ORTHO05D004436 3.7e-55 218.4 138 76.8
TAR633G0529 Trochodendron aralioides HOM05D003842 ORTHO05D004436 8.2e-55 217.2 139 75.5
Ciclev10023867m.g Citrus clementina HOM05D003842 ORTHO05D004436 1.8e-54 216.1 139 75.5
CiPaw.09G003300 Carya illinoinensis HOM05D003842 ORTHO05D004436 3.1e-54 215.3 138 74.6
Cfa016461 Carpinus fangiana HOM05D003842 ORTHO05D004436 4.1e-54 214.9 139 74.1
QL07p041738 Quercus lobata HOM05D003842 ORTHO05D004436 5.3e-54 214.5 139 74.1
MD12G1104900 Malus domestica HOM05D003842 ORTHO05D004436 7.0e-54 214.2 139 74.8
Prupe.7G124700 Prunus persica HOM05D003842 ORTHO05D004436 9.1e-54 213.8 139 75.5
Cc06_g04620 Coffea canephora HOM05D003842 ORTHO05D004436 1.6e-53 213.0 138 74.6
Gohir.A09G144400 Gossypium hirsutum HOM05D003842 ORTHO05D004436 1.6e-53 213.0 138 74.6
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 1.6e-53 213.0 119 81.5
Duzib106G1778 Durio zibethinus HOM05D003842 ORTHO05D004436 2.0e-53 212.6 136 75.7
CANSAT80G2389 Cannabis sativa HOM05D003842 ORTHO05D004436 5.9e-53 211.1 135 77.0
FvH4_6g17010 Fragaria vesca HOM05D003842 ORTHO05D004436 5.9e-53 211.1 139 75.5
Nn6g35197 Nelumbo nucifera HOM05D003842 ORTHO05D004436 5.9e-53 211.1 136 75.0
RcHm_v2.0_Chr3g0471001 Rosa chinensis HOM05D003842 ORTHO05D004436 5.9e-53 211.1 139 74.8
Gohir.D09G140200 Gossypium hirsutum HOM05D003842 ORTHO05D004436 7.7e-53 210.7 138 73.2
Oeu045240.1 Olea europaea HOM05D003842 ORTHO05D004436 1.3e-52 209.9 139 72.7
HanXRQChr13g0400661 Helianthus annuus HOM05D003842 ORTHO05D004436 1.7e-52 209.5 137 75.9
Gorai.006G160800 Gossypium raimondii HOM05D003842 ORTHO05D004436 2.9e-52 208.8 138 73.2
Lj3C992G6 Lonicera japonica HOM05D003842 ORTHO05D004436 2.9e-52 208.8 136 73.5
Migut.L01724 Erythranthe guttata HOM05D003842 ORTHO05D004436 5.0e-52 208.0 139 71.2
FAN05G4099 Fragaria x ananassa HOM05D003842 ORTHO05D004436 5.0e-52 208.0 139 74.1
ECA233G4297 Erigeron canadensis HOM05D003842 ORTHO05D004436 8.5e-52 207.2 136 75.0
Duzib093G0118 Durio zibethinus HOM05D003842 ORTHO05D004436 1.9e-51 206.1 139 71.9
ClCG04G009540 Citrullus lanatus HOM05D003842 ORTHO05D004436 4.2e-51 204.9 138 71.0
Carub.0004s1865 Capsella rubella HOM05D003842 ORTHO05D004436 7.2e-51 204.1 136 71.3
MELO3C024492.2 Cucumis melo HOM05D003842 ORTHO05D004436 9.4e-51 203.8 138 71.7
Lj1g0002569 Lotus japonicus HOM05D003842 ORTHO05D004436 9.4e-51 203.8 135 73.3
AL4G33000 Arabidopsis lyrata HOM05D003842 ORTHO05D004436 1.2e-50 203.4 136 71.3
AT2G36810 Arabidopsis thaliana HOM05D003842 ORTHO05D004436 1.2e-50 203.4 136 71.3
BolC4t28040H Brassica oleracea HOM05D003842 ORTHO05D004436 1.6e-50 203.0 136 72.1
Aa31LG5G22020 Aethionema arabicum HOM05D003842 ORTHO05D004436 2.7e-50 202.2 136 71.3
A04p28120 Brassica napus HOM05D003842 ORTHO05D004436 2.7e-50 202.2 136 72.1
BraA04t18297Z Brassica rapa HOM05D003842 ORTHO05D004436 2.7e-50 202.2 136 72.1
CsaV3_6G040160 Cucumis sativus L. HOM05D003842 ORTHO05D004436 3.6e-50 201.8 138 71.0
Thhalv10016131m.g Eutrema salsugineum HOM05D003842 ORTHO05D004436 3.6e-50 201.8 136 71.3
MSTRG.26674 Avicennia marina HOM05D003842 ORTHO05D004436 4.7e-50 201.4 139 71.2
CARHR131190 Cardamine hirsuta HOM05D003842 ORTHO05D004436 6.1e-50 201.1 136 71.3
Glyma.19G186900 Glycine max HOM05D003842 ORTHO05D004436 6.1e-50 201.1 135 72.6
Sed0026042 Sechium edule HOM05D003842 ORTHO05D004436 8.0e-50 200.7 135 71.1
EL10Ac7g16718 Beta vulgaris HOM05D003842 ORTHO05D004436 1.0e-49 200.3 136 69.9
BcaC02g07579 Brassica carinata HOM05D003842 ORTHO05D004436 1.4e-49 199.9 136 71.3
C04p65510 Brassica napus HOM05D003842 ORTHO05D004436 1.4e-49 199.9 136 71.3
Phvul.001G181800 Phaseolus vulgaris HOM05D003842 ORTHO05D004436 1.4e-49 199.9 135 71.1
SGA_v2.0_scaffold224G42922 Striga asiatica HOM05D003842 ORTHO05D004436 1.4e-49 199.9 131 73.3
Ah.08g211380 Amaranthus hybridus HOM05D003842 ORTHO05D004436 1.8e-49 199.5 135 68.9
Psat3g040240 Pisum sativum HOM05D003842 ORTHO05D004436 1.8e-49 199.5 131 73.3
Sp4g19070 Schrenkiella parvula HOM05D003842 ORTHO05D004436 1.8e-49 199.5 136 69.9
Eucgr.K02431 Eucalyptus grandis HOM05D003842 ORTHO05D004436 3.0e-49 198.7 136 69.1
THA.LOC104818591 Tarenaya hassleriana HOM05D003842 ORTHO05D004436 3.0e-49 198.7 137 70.1
Gohir.A11G323300 Gossypium hirsutum HOM05D003842 ORTHO05D004436 4.0e-49 198.4 136 71.3
TWI74G0820 Tripterygium wilfordii HOM05D003842 ORTHO05D004436 4.0e-49 198.4 142 68.3
AUR62036532 Chenopodium quinoa HOM05D003842 ORTHO05D004436 5.2e-49 198.0 136 68.4
Gohir.D11G342400 Gossypium hirsutum HOM05D003842 ORTHO05D004436 5.2e-49 198.0 136 71.3
Potri.006G120800 Populus trichocarpa HOM05D003842 ORTHO05D004436 6.8e-49 197.6 139 69.8
PGR142G1271 Punica granatum HOM05D003842 ORTHO05D004436 6.8e-49 197.6 139 69.8
Gorai.007G372400 Gossypium raimondii HOM05D003842 ORTHO05D004436 1.5e-48 196.4 136 70.6
Aqoxy1G01066 Aquilegia oxysepala HOM05D003842 ORTHO05D004436 2.0e-48 196.1 135 68.9
arahy.Tifrunner.gnm1.ann1.BQYP5G Arachis hypogaea HOM05D003842 ORTHO05D004436 3.4e-48 195.3 135 69.6
arahy.Tifrunner.gnm1.ann1.CVPH5H Arachis hypogaea HOM05D003842 ORTHO05D004436 3.4e-48 195.3 135 70.4
Ca_08873_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 3.4e-48 195.3 131 71.0
DCAR_020802 Daucus carota HOM05D003842 ORTHO05D004436 7.5e-48 194.1 137 70.1
Solyc09g008490.4 Solanum lycopersicum HOM05D003842 ORTHO05D004436 1.7e-47 193.0 136 66.2
Sopen09g003320 Solanum pennellii HOM05D003842 ORTHO05D004436 1.7e-47 193.0 136 66.2
AUR62042272 Chenopodium quinoa HOM05D003842 ORTHO05D004436 2.8e-47 192.2 136 66.2
Lalb_Chr20g0112381 Lupinus albus HOM05D003842 ORTHO05D004436 3.7e-47 191.8 136 70.6
Peaxi162Scf00435g01013 Petunia axillaris HOM05D003842 ORTHO05D004436 3.7e-47 191.8 136 66.2
ATR0043G024 Amborella trichopoda HOM05D003842 ORTHO05D004436 8.3e-47 190.7 136 65.4
Medtr7g102430 Medicago truncatula HOM05D003842 ORTHO05D004436 1.4e-46 189.9 131 71.0
Haze_19462 Corylus avellana HOM05D003842 ORTHO05D004436 1.8e-46 189.5 139 68.3
FAN09G2316 Fragaria x ananassa HOM05D003842 ORTHO05D004436 1.6e-45 186.4 139 69.1
CAN.G1038.13 Capsicum annuum HOM05D003842 ORTHO05D004436 2.0e-45 186.0 137 65.0
FAN02G1267 Fragaria x ananassa HOM05D003842 ORTHO05D004436 2.7e-45 185.7 139 68.3
FAN05G0072 Fragaria x ananassa HOM05D003842 ORTHO05D004436 8.6e-44 180.6 139 67.6
Sc20g0005740 Simmondsia chinensis HOM05D003842 ORTHO05D004436 3.3e-43 178.7 139 64.0
Nitab4.5_0003314g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 2.8e-42 175.6 136 63.2
PSO339G3623 Papaver somniferum HOM05D003842 ORTHO05D004436 4.7e-42 174.9 136 64.7
TPR.G8693 Trifolium pratense HOM05D003842 ORTHO05D004436 3.0e-41 172.2 131 67.2
Nitab4.5_0002535g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 9.8e-40 167.2 135 60.7
Lsat_1_v5_gn_6_28640 Lactuca sativa HOM05D003842 ORTHO05D004436 2.2e-39 166.0 136 66.2
Zm00001eb003810 Zea mays HOM05D003842 ORTHO05D004436 1.1e-38 163.7 131 62.6
Sabra06G0095000 Salix brachista HOM05D003842 ORTHO05D004436 1.5e-35 153.3 139 59.0
Mapoly0008s0039 Marchantia polymorpha HOM05D003842 ORTHO05D004436 1.9e-30 136.3 137 50.4
AagrBONN_evm.TU.Sc2ySwM_228.1882 Anthoceros agrestis HOM05D003842 ORTHO05D004436 7.0e-30 134.4 136 50.7
Cpa.g.sc5.147 Carica papaya HOM05D003842 ORTHO05D004436 7.0e-30 134.4 92 70.7
PSO063G4107 Papaver somniferum HOM05D003842 ORTHO05D004436 1.3e-28 130.2 136 52.2
Pp3c2_21970 Physcomitrium patens HOM05D003842 ORTHO05D004436 1.7e-28 129.8 135 48.9
SMO207G0008 Selaginella moellendorffii HOM05D003842 ORTHO05D004436 2.9e-23 112.5 145 46.9
Pp3c22_4780 Physcomitrium patens HOM05D003842 ORTHO05D004436 8.6e-20 100.9 137 38.7
Hma1.2p1_0547F.1_g176440 Hydrangea macrophylla HOM05D003842 ORTHO05D004436 1.4e-14 83.6 49 83.7
CBR_g53950 Chara braunii HOM05D003842 ORTHO05D004436 5.4e-14 81.6 156 35.3
Ca_08928_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 4.4e-08 62.0 47 63.8


User provided reference genes

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