Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28924 Actinidia chinensis HOM05D003842 ORTHO05D004436 1.4e-53 212.6 101 100.0
vmacro07325 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 2.4e-21 105.5 51 92.2
Rhsim03G0088500 Rhododendron simsii HOM05D003842 ORTHO05D004436 5.3e-21 104.4 51 90.2
Actinidia26647 Actinidia chinensis HOM05D003842 ORTHO05D004436 2.0e-20 102.4 54 85.2
CSS0021824 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 1.7e-19 99.4 57 77.2
CSS0023266 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 1.7e-19 99.4 57 77.2
Dinv35821 Davidia involucrata HOM05D003842 ORTHO05D004436 1.1e-18 96.7 54 79.6
Hma1.2p1_0547F.1_g176420 Hydrangea macrophylla HOM05D003842 ORTHO05D004436 3.2e-18 95.1 57 71.9
Migut.L01724 Erythranthe guttata HOM05D003842 ORTHO05D004436 1.8e-16 89.4 57 68.4
ECA233G4297 Erigeron canadensis HOM05D003842 ORTHO05D004436 3.0e-16 88.6 54 70.4
MSTRG.26674 Avicennia marina HOM05D003842 ORTHO05D004436 6.7e-16 87.4 58 63.8
Cc06_g04620 Coffea canephora HOM05D003842 ORTHO05D004436 6.7e-16 87.4 54 68.5
HanXRQChr13g0400661 Helianthus annuus HOM05D003842 ORTHO05D004436 6.7e-16 87.4 54 70.4
Nitab4.5_0002535g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 6.7e-16 87.4 57 64.9
Ciclev10024523m.g Citrus clementina HOM05D003842 ORTHO05D004436 8.8e-16 87.0 54 70.4
Oeu045240.1 Olea europaea HOM05D003842 ORTHO05D004436 8.8e-16 87.0 54 70.4
Gorai.006G160800 Gossypium raimondii HOM05D003842 ORTHO05D004436 1.1e-15 86.7 57 66.7
GSVIVG01033696001 Vitis vinifera HOM05D003842 ORTHO05D004436 1.1e-15 86.7 57 66.7
Solyc09g008490.4 Solanum lycopersicum HOM05D003842 ORTHO05D004436 1.5e-15 86.3 57 63.2
Sopen09g003320 Solanum pennellii HOM05D003842 ORTHO05D004436 1.5e-15 86.3 57 63.2
Atru.chr8.1723 Acer truncatum HOM05D003842 ORTHO05D004436 2.6e-15 85.5 57 66.7
CiPaw.09G003300 Carya illinoinensis HOM05D003842 ORTHO05D004436 2.6e-15 85.5 58 63.8
Peaxi162Scf00435g01013 Petunia axillaris HOM05D003842 ORTHO05D004436 2.6e-15 85.5 57 64.9
Potri.006G120800 Populus trichocarpa HOM05D003842 ORTHO05D004436 2.6e-15 85.5 54 68.5
Lsat_1_v5_gn_6_28640 Lactuca sativa HOM05D003842 ORTHO05D004436 3.3e-15 85.1 54 66.7
Thecc.05G072900 Theobroma cacao HOM05D003842 ORTHO05D004436 4.4e-15 84.7 57 68.4
Nn6g35197 Nelumbo nucifera HOM05D003842 ORTHO05D004436 5.7e-15 84.3 51 72.5
Lj1g0002569 Lotus japonicus HOM05D003842 ORTHO05D004436 7.4e-15 84.0 57 63.2
Duzib093G0118 Durio zibethinus HOM05D003842 ORTHO05D004436 9.7e-15 83.6 57 64.9
Gohir.A11G323300 Gossypium hirsutum HOM05D003842 ORTHO05D004436 9.7e-15 83.6 57 63.2
Gorai.007G372400 Gossypium raimondii HOM05D003842 ORTHO05D004436 9.7e-15 83.6 57 63.2
Manes.08G013802 Manihot esculenta HOM05D003842 ORTHO05D004436 9.7e-15 83.6 55 67.3
Nitab4.5_0003314g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 1.7e-14 82.8 57 61.4
CAN.G1038.13 Capsicum annuum HOM05D003842 ORTHO05D004436 2.2e-14 82.4 57 63.2
Ca_08928_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 2.2e-14 82.4 53 67.9
SGA_v2.0_scaffold224G42922 Striga asiatica HOM05D003842 ORTHO05D004436 2.2e-14 82.4 53 66.0
Psat3g040280 Pisum sativum HOM05D003842 ORTHO05D004436 2.8e-14 82.0 57 63.2
TPR.G8693 Trifolium pratense HOM05D003842 ORTHO05D004436 2.8e-14 82.0 57 63.2
CANSAT80G2389 Cannabis sativa HOM05D003842 ORTHO05D004436 4.8e-14 81.3 54 66.7
Cfa016461 Carpinus fangiana HOM05D003842 ORTHO05D004436 4.8e-14 81.3 57 64.9
Medtr7g102430 Medicago truncatula HOM05D003842 ORTHO05D004436 4.8e-14 81.3 57 63.2
QL07p041738 Quercus lobata HOM05D003842 ORTHO05D004436 6.3e-14 80.9 57 64.9
Glyma.19G186900 Glycine max HOM05D003842 ORTHO05D004436 1.1e-13 80.1 57 61.4
Prupe.7G124700 Prunus persica HOM05D003842 ORTHO05D004436 1.1e-13 80.1 57 61.4
Aqoxy1G01066 Aquilegia oxysepala HOM05D003842 ORTHO05D004436 1.4e-13 79.7 57 61.4
Ca_08873_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 1.4e-13 79.7 57 63.2
Phvul.001G181800 Phaseolus vulgaris HOM05D003842 ORTHO05D004436 1.4e-13 79.7 57 61.4
Sabra06G0095000 Salix brachista HOM05D003842 ORTHO05D004436 1.4e-13 79.7 48 72.9
Sed0026042 Sechium edule HOM05D003842 ORTHO05D004436 1.4e-13 79.7 57 61.4
AUR62036532 Chenopodium quinoa HOM05D003842 ORTHO05D004436 2.4e-13 79.0 54 63.0
ClCG04G009540 Citrullus lanatus HOM05D003842 ORTHO05D004436 2.4e-13 79.0 53 66.0
Lalb_Chr20g0112381 Lupinus albus HOM05D003842 ORTHO05D004436 2.4e-13 79.0 57 61.4
MELO3C024492.2 Cucumis melo HOM05D003842 ORTHO05D004436 3.1e-13 78.6 57 61.4
CsaV3_6G040160 Cucumis sativus L. HOM05D003842 ORTHO05D004436 3.1e-13 78.6 57 61.4
Duzib106G1778 Durio zibethinus HOM05D003842 ORTHO05D004436 3.1e-13 78.6 57 61.4
PSO063G4107 Papaver somniferum HOM05D003842 ORTHO05D004436 4.1e-13 78.2 57 64.9
PSO339G3623 Papaver somniferum HOM05D003842 ORTHO05D004436 4.1e-13 78.2 57 64.9
AUR62042272 Chenopodium quinoa HOM05D003842 ORTHO05D004436 5.3e-13 77.8 50 66.0
FvH4_6g17010 Fragaria vesca HOM05D003842 ORTHO05D004436 5.3e-13 77.8 54 63.0
FAN02G1267 Fragaria x ananassa HOM05D003842 ORTHO05D004436 5.3e-13 77.8 54 63.0
FAN05G0072 Fragaria x ananassa HOM05D003842 ORTHO05D004436 5.3e-13 77.8 54 63.0
FAN05G4099 Fragaria x ananassa HOM05D003842 ORTHO05D004436 5.3e-13 77.8 54 63.0
FAN09G2316 Fragaria x ananassa HOM05D003842 ORTHO05D004436 5.3e-13 77.8 54 63.0
TWI74G0820 Tripterygium wilfordii HOM05D003842 ORTHO05D004436 5.3e-13 77.8 57 63.2
HPP92_022597 Vanilla planifolia HOM05D003842 ORTHO05D004436 5.3e-13 77.8 57 61.4
MD12G1105200 Malus domestica HOM05D003842 ORTHO05D004436 7.0e-13 77.4 54 61.1
RcHm_v2.0_Chr3g0471001 Rosa chinensis HOM05D003842 ORTHO05D004436 9.1e-13 77.0 57 59.6
Lj3C992G6 Lonicera japonica HOM05D003842 ORTHO05D004436 1.2e-12 76.6 46 71.7
PGR142G1271 Punica granatum HOM05D003842 ORTHO05D004436 3.5e-12 75.1 54 64.8
TAR633G0529 Trochodendron aralioides HOM05D003842 ORTHO05D004436 3.5e-12 75.1 57 59.6
arahy.Tifrunner.gnm1.ann1.BQYP5G Arachis hypogaea HOM05D003842 ORTHO05D004436 5.9e-12 74.3 57 57.9
arahy.Tifrunner.gnm1.ann1.CVPH5H Arachis hypogaea HOM05D003842 ORTHO05D004436 5.9e-12 74.3 57 57.9
Hund20322 Selenicereus undatus HOM05D003842 ORTHO05D004436 7.7e-12 73.9 57 57.9
Eucgr.K02431 Eucalyptus grandis HOM05D003842 ORTHO05D004436 1.3e-11 73.2 55 60.0
Cpa.g.sc5.149 Carica papaya HOM05D003842 ORTHO05D004436 2.2e-11 72.4 47 68.1
ATR0043G024 Amborella trichopoda HOM05D003842 ORTHO05D004436 3.8e-11 71.6 51 58.8
MD12G1104900 Malus domestica HOM05D003842 ORTHO05D004436 5.0e-11 71.2 54 57.4
Sc20g0005740 Simmondsia chinensis HOM05D003842 ORTHO05D004436 5.0e-11 71.2 57 59.6
Aa31LG5G22020 Aethionema arabicum HOM05D003842 ORTHO05D004436 1.5e-10 69.7 57 59.6
THA.LOC104818591 Tarenaya hassleriana HOM05D003842 ORTHO05D004436 1.5e-10 69.7 57 57.9
Sp4g19070 Schrenkiella parvula HOM05D003842 ORTHO05D004436 1.9e-10 69.3 57 57.9
Zm00001eb003810 Zea mays HOM05D003842 ORTHO05D004436 1.9e-10 69.3 54 57.4
EL10Ac7g16718 Beta vulgaris HOM05D003842 ORTHO05D004436 3.2e-10 68.6 54 59.3
Thhalv10016131m.g Eutrema salsugineum HOM05D003842 ORTHO05D004436 3.2e-10 68.6 57 57.9
A04p28120 Brassica napus HOM05D003842 ORTHO05D004436 9.4e-10 67.0 57 56.1
C04p65510 Brassica napus HOM05D003842 ORTHO05D004436 9.4e-10 67.0 57 56.1
BolC4t28040H Brassica oleracea HOM05D003842 ORTHO05D004436 9.4e-10 67.0 57 56.1
BraA04t18297Z Brassica rapa HOM05D003842 ORTHO05D004436 9.4e-10 67.0 57 56.1
AT2G36810 Arabidopsis thaliana HOM05D003842 ORTHO05D004436 1.2e-09 66.6 57 56.1
BcaC02g07579 Brassica carinata HOM05D003842 ORTHO05D004436 1.2e-09 66.6 57 56.1
Carub.0004s1865 Capsella rubella HOM05D003842 ORTHO05D004436 1.2e-09 66.6 57 56.1
CARHR131190 Cardamine hirsuta HOM05D003842 ORTHO05D004436 1.2e-09 66.6 57 56.1
AL4G33000 Arabidopsis lyrata HOM05D003842 ORTHO05D004436 2.7e-09 65.5 57 56.1
Ah.08g211380 Amaranthus hybridus HOM05D003842 ORTHO05D004436 1.0e-08 63.5 54 53.7
Lsat_1_v5_gn_5_61460 Lactuca sativa HOM05D000352 ORTHO05D012274 1.3e-06 56.6 32 65.6
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 1.7e-06 56.2 29 72.4
Lsat_1_v5_gn_9_56200 Lactuca sativa HOM05D003842 ORTHO05D004436 6.3e-06 54.3 32 62.5
Lsat_1_v5_gn_8_23700 Lactuca sativa HOM05D001336 ORTHO05D001211 8.2e-06 53.9 27 70.4
Lsat_1_v5_gn_9_26120 Lactuca sativa HOM05D001439 ORTHO05D004436 8.2e-06 53.9 42 57.1


User provided reference genes

Program Settings