Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 1.1e-292 1009.2 506 100.0
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 5.4e-215 751.1 473 80.3
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.6e-211 739.6 473 78.9
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 9.9e-209 730.3 471 77.5
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.3e-203 713.4 504 73.2
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.1e-199 700.3 471 74.5
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 2.7e-198 695.7 560 67.0
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 4.6e-198 694.9 469 74.6
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.5e-196 689.9 473 73.8
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 9.6e-196 687.2 473 73.8
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.2e-193 680.2 470 73.4
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 2.6e-193 679.1 471 71.8
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 3.4e-193 678.7 473 72.9
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 2.2e-192 676.0 471 73.5
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.2e-192 676.0 472 72.7
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 9.3e-191 670.6 471 72.6
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 2.7e-190 669.1 469 72.3
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 2.7e-190 669.1 470 73.6
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 4.6e-190 668.3 469 72.7
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.3e-189 666.8 471 71.8
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 2.3e-189 666.0 473 71.5
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.3e-189 666.0 470 70.6
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 3.9e-189 665.2 472 70.3
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 5.1e-189 664.8 473 70.8
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 8.7e-189 664.1 507 69.0
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.5e-188 663.3 473 71.2
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 2.5e-188 662.5 473 70.8
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 2.5e-188 662.5 479 69.5
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 4.3e-188 661.8 473 70.0
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 5.7e-188 661.4 467 70.9
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.7e-188 661.4 473 70.2
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 7.4e-188 661.0 472 69.5
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 7.4e-188 661.0 473 69.6
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 7.4e-188 661.0 489 68.5
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 9.6e-188 660.6 471 71.3
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 2.8e-187 659.1 472 70.8
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 4.8e-187 658.3 467 72.8
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 6.2e-187 657.9 433 77.1
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 8.2e-187 657.5 473 69.6
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 8.2e-187 657.5 472 70.1
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.8e-186 656.4 489 68.7
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 2.4e-186 656.0 470 69.1
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 3.1e-186 655.6 470 71.3
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 5.8e-185 651.4 473 69.8
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 7.6e-185 651.0 465 70.5
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.3e-184 650.2 471 70.3
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 2.2e-184 649.4 469 69.9
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 2.9e-184 649.0 486 67.7
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.9e-184 649.0 473 71.0
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 3.8e-184 648.7 489 68.3
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.8e-184 648.7 471 70.1
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 5.0e-184 648.3 493 68.6
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 6.5e-184 647.9 511 65.4
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 4.2e-183 645.2 472 69.7
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 7.1e-183 644.4 511 65.0
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 7.1e-183 644.4 458 71.6
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.1e-182 641.3 471 69.2
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.8e-181 639.8 470 68.1
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 2.3e-181 639.4 467 68.1
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 6.7e-181 637.9 472 69.1
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.5e-180 636.7 473 66.6
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 4.3e-180 635.2 472 69.3
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 9.7e-180 634.0 471 66.7
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 3.7e-179 632.1 471 67.5
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 6.9e-178 627.9 470 66.8
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 6.9e-178 627.9 470 67.9
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.2e-177 627.1 469 68.2
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.0e-177 626.3 411 77.1
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 3.4e-177 625.5 472 67.2
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.5e-177 625.2 462 68.2
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.0e-176 624.0 489 66.7
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.3e-176 623.6 462 68.0
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 2.9e-176 622.5 473 68.1
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 3.8e-176 622.1 465 68.8
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.4e-175 620.2 474 68.6
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.4e-175 620.2 466 67.8
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.9e-175 619.8 471 66.2
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 5.5e-175 618.2 470 66.2
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.1e-174 616.3 472 67.4
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.1e-173 611.7 469 67.0
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 5.1e-173 611.7 472 67.8
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 8.8e-173 610.9 472 66.1
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.3e-172 608.6 471 66.9
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.7e-172 608.2 471 66.9
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.7e-171 606.7 472 65.5
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 2.2e-171 606.3 472 65.9
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 4.8e-171 605.1 472 65.9
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 4.8e-171 605.1 472 65.9
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 8.2e-171 604.4 472 65.9
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.4e-170 603.6 472 65.9
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 1.8e-170 603.2 473 65.3
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 1.8e-170 603.2 473 64.9
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 1.8e-170 603.2 473 65.3
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 1.8e-170 603.2 472 65.5
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.4e-170 602.8 472 65.5
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.4e-170 602.8 469 64.0
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 3.1e-170 602.4 472 65.5
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 4.1e-170 602.1 472 65.3
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 5.3e-170 601.7 472 65.0
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-169 600.5 472 65.0
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 3.4e-169 599.0 473 64.5
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 5.9e-169 598.2 473 65.1
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 7.7e-169 597.8 469 62.9
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 1.7e-168 596.7 474 64.8
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.7e-168 596.7 475 64.4
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.5e-167 592.8 497 63.8
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 3.2e-167 592.4 472 64.6
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 5.5e-167 591.7 470 64.5
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 1.8e-165 586.6 459 65.1
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.7e-163 580.1 452 66.4
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 2.4e-162 576.2 541 56.6
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 3.1e-162 575.9 417 69.5
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 5.9e-161 571.6 458 64.0
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.0e-160 570.9 405 70.1
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.0e-160 570.9 473 63.0
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.7e-160 570.1 469 61.6
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.5e-159 567.0 408 69.6
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 2.5e-159 566.2 463 63.5
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 4.7e-158 562.0 412 70.4
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 4.0e-157 558.9 470 62.8
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.7e-155 553.5 432 63.4
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 4.1e-154 548.9 547 53.9
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 1.2e-153 547.4 472 61.0
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 1.2e-150 537.3 479 61.8
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 2.1e-150 536.6 471 62.0
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 3.5e-145 519.2 470 59.1
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 2.0e-129 466.8 501 51.5
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 2.3e-125 453.4 492 50.8
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.2e-121 441.0 325 67.7
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 2.1e-113 413.7 379 57.8
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.2e-110 404.4 416 55.5
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 4.4e-108 396.0 277 71.8
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 1.2e-105 387.9 466 47.4
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.5e-87 327.8 212 74.1
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 2.7e-81 307.0 217 71.4
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.4e-79 298.9 234 69.2
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.6e-78 297.7 238 65.1
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.0e-68 264.2 238 60.9
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.3e-59 235.0 404 41.3
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 1.8e-53 214.5 203 59.1
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 7.9e-49 199.1 222 51.8
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 1.3e-46 191.8 536 30.0
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.5e-39 168.3 380 32.4
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 7.5e-39 166.0 110 77.3
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 2.8e-38 164.1 114 68.4
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.7e-30 137.1 186 45.2
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.7e-30 137.1 116 62.9
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 4.1e-29 133.7 78 83.3
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.1e-25 119.8 116 51.7
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.1e-25 119.8 116 51.7
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 4.9e-22 110.2 93 61.3
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 6.6e-19 99.8 73 69.9
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.0e-16 92.4 167 36.5
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 4.9e-14 83.6 61 70.5
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 1.7e-11 75.1 211 28.4
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 5.0e-11 73.6 85 47.1
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.2e-09 68.9 110 30.0
PRCOL_00005868 Prasinoderma coloniale HOM05D000740 ORTHO05D007141 2.8e-09 67.8 241 26.6
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.3e-08 64.7 75 45.3
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.1e-08 64.3 40 72.5
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.4e-07 60.5 36 80.6
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.3e-06 58.9 101 29.7


User provided reference genes

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