Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28907 Actinidia chinensis HOM05D006298 ORTHO05D008167 8.5e-165 583.6 288 100.0
Actinidia08768 Actinidia chinensis HOM05D006298 ORTHO05D008167 3.7e-120 435.3 288 78.1
CSS0011355 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 2.7e-102 375.9 288 69.4
CSS0035285 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 2.7e-102 375.9 288 68.8
Hma1.2p1_0205F.1_g086920 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 1.4e-95 353.6 288 66.0
Rhsim03G0091000 Rhododendron simsii HOM05D006298 ORTHO05D008167 5.5e-95 351.7 291 67.7
TAR623G0635 Trochodendron aralioides HOM05D006298 ORTHO05D008167 4.3e-92 342.0 288 64.6
Lj2A120T46 Lonicera japonica HOM05D006298 ORTHO05D008167 1.7e-88 330.1 288 63.2
PGR142G1273 Punica granatum HOM05D006298 ORTHO05D008167 6.5e-88 328.2 292 65.1
Phvul.007G147500 Phaseolus vulgaris HOM05D006298 ORTHO05D008167 1.9e-87 326.6 289 63.3
QL07p043135 Quercus lobata HOM05D006298 ORTHO05D008167 5.5e-87 325.1 288 62.5
Sabra16G0098900 Salix brachista HOM05D006298 ORTHO05D008167 1.6e-86 323.6 290 62.8
Cfa017623 Carpinus fangiana HOM05D006298 ORTHO05D008167 2.1e-86 323.2 288 62.2
VMungo0720G2332 Vigna mungo HOM05D006298 ORTHO05D008167 6.0e-86 321.6 288 63.2
COL.COLO4_26951 Corchorus olitorius HOM05D006298 ORTHO05D008167 1.8e-85 320.1 289 64.0
Potri.016G099300 Populus trichocarpa HOM05D006298 ORTHO05D008167 2.3e-85 319.7 290 62.4
Gohir.A01G141763 Gossypium hirsutum HOM05D006298 ORTHO05D008167 1.1e-84 317.4 289 62.6
Eucgr.K02926 Eucalyptus grandis HOM05D006298 ORTHO05D008167 1.9e-84 316.6 293 61.1
Manes.08G011200 Manihot esculenta HOM05D006298 ORTHO05D008167 2.5e-84 316.2 291 61.5
TWI53G1706 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 4.3e-84 315.5 288 60.1
Gohir.D01G130400 Gossypium hirsutum HOM05D006298 ORTHO05D008167 1.3e-83 313.9 289 61.9
Gorai.002G161800 Gossypium raimondii HOM05D006298 ORTHO05D008167 1.3e-83 313.9 289 61.9
CiPaw.09G171800 Carya illinoinensis HOM05D006298 ORTHO05D008167 1.6e-83 313.5 290 62.1
Oeu053684.1 Olea europaea HOM05D006298 ORTHO05D008167 2.8e-83 312.8 300 60.7
ClCG10G020070 Citrullus lanatus HOM05D006298 ORTHO05D008167 3.7e-83 312.4 289 60.9
Cpa.g.sc102.32 Carica papaya HOM05D006298 ORTHO05D008167 3.1e-82 309.3 289 60.9
Haze_20529 Corylus avellana HOM05D006298 ORTHO05D008167 3.1e-82 309.3 308 57.8
TWI77G0409 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 3.1e-82 309.3 288 60.8
GSVIVG01033647001 Vitis vinifera HOM05D006298 ORTHO05D008167 4.1e-82 308.9 289 60.9
Prupe.7G128900 Prunus persica HOM05D006298 ORTHO05D008167 6.9e-82 308.1 291 60.1
Thecc.05G068100 Theobroma cacao HOM05D006298 ORTHO05D008167 1.5e-81 307.0 288 61.1
Cc06_g04290 Coffea canephora HOM05D006298 ORTHO05D008167 2.6e-81 306.2 288 59.4
CsaV3_3G036020 Cucumis sativus L. HOM05D006298 ORTHO05D008167 5.9e-81 305.1 286 59.8
Lj4g0025039 Lotus japonicus HOM05D006298 ORTHO05D008167 7.6e-81 304.7 288 58.7
THA.LOC104807061 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 1.3e-80 303.9 289 58.5
MD04G1092500 Malus domestica HOM05D006298 ORTHO05D008167 8.5e-80 301.2 292 59.9
RcHm_v2.0_Chr3g0470361 Rosa chinensis HOM05D006298 ORTHO05D008167 1.9e-79 300.1 289 59.5
CANSAT80G2892 Cannabis sativa HOM05D006298 ORTHO05D008167 5.5e-79 298.5 288 59.7
Aa31LG5G22130 Aethionema arabicum HOM05D006298 ORTHO05D008167 9.3e-79 297.7 288 58.3
Aqoxy1G01145 Aquilegia oxysepala HOM05D006298 ORTHO05D008167 1.2e-78 297.4 293 58.0
HanXRQChr11g0350481 Helianthus annuus HOM05D006298 ORTHO05D008167 1.6e-78 297.0 286 57.7
Sed0010557 Sechium edule HOM05D006298 ORTHO05D008167 1.6e-78 297.0 291 60.5
Sc20g0005540 Simmondsia chinensis HOM05D006298 ORTHO05D008167 1.6e-78 297.0 290 57.6
Sp4g19190 Schrenkiella parvula HOM05D006298 ORTHO05D008167 4.6e-78 295.4 290 57.9
Migut.J00651 Erythranthe guttata HOM05D006298 ORTHO05D008167 6.1e-78 295.0 293 58.0
Ciclev10012651m.g Citrus clementina HOM05D006298 ORTHO05D008167 1.0e-77 294.3 288 59.4
arahy.Tifrunner.gnm1.ann1.GSM08A Arachis hypogaea HOM05D006298 ORTHO05D008167 2.3e-77 293.1 290 59.0
arahy.Tifrunner.gnm1.ann1.UZM884 Arachis hypogaea HOM05D006298 ORTHO05D008167 2.3e-77 293.1 290 59.0
FAN09G1272 Fragaria x ananassa HOM05D006298 ORTHO05D008167 2.3e-77 293.1 290 59.7
Lalb_Chr21g0315031 Lupinus albus HOM05D006298 ORTHO05D008167 2.3e-77 293.1 290 57.6
Ca_11509_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 3.0e-77 292.7 291 57.0
DCAR_017674 Daucus carota HOM05D006298 ORTHO05D008167 3.9e-77 292.4 293 58.7
FvH4_6g16470 Fragaria vesca HOM05D006298 ORTHO05D008167 5.1e-77 292.0 291 59.8
FAN14G4061 Fragaria x ananassa HOM05D006298 ORTHO05D008167 5.1e-77 292.0 291 59.8
FAN02G1782 Fragaria x ananassa HOM05D006298 ORTHO05D008167 6.7e-77 291.6 290 60.3
Thhalv10017183m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 8.7e-77 291.2 288 57.3
Nitab4.5_0000063g0130 Nicotiana tabacum HOM05D006298 ORTHO05D008167 8.7e-77 291.2 289 56.1
SGA_v2.0_scaffold40G15525 Striga asiatica HOM05D006298 ORTHO05D008167 8.7e-77 291.2 292 58.2
Duzib106G2039 Durio zibethinus HOM05D006298 ORTHO05D008167 1.1e-76 290.8 286 59.8
FAN05G1999 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.5e-76 290.4 289 59.9
FAN05G2800 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.5e-76 290.4 289 59.9
Solyc10g083990.2 Solanum lycopersicum HOM05D006298 ORTHO05D008167 4.3e-76 288.9 289 55.4
Sopen10g033440 Solanum pennellii HOM05D006298 ORTHO05D008167 4.3e-76 288.9 289 55.4
PGSC0003DMG400028288 Solanum tuberosum HOM05D006298 ORTHO05D008167 4.3e-76 288.9 289 55.7
Nitab4.5_0000814g0050 Nicotiana tabacum HOM05D006298 ORTHO05D008167 5.7e-76 288.5 289 56.1
CDE04G2630 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 1.3e-75 287.3 291 56.0
THA.LOC104805233 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 3.7e-75 285.8 319 53.6
vmacro07297 Vaccinium macrocarpon HOM05D006298 ORTHO05D008167 3.7e-75 285.8 386 47.7
Lsat_1_v5_gn_1_51681 Lactuca sativa HOM05D006298 ORTHO05D008167 1.4e-74 283.9 289 55.7
TPR.G11270 Trifolium pratense HOM05D006298 ORTHO05D008167 1.4e-74 283.9 289 56.7
CDE03G0133 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 2.4e-74 283.1 293 54.6
Peaxi162Scf00311g01110 Petunia axillaris HOM05D006298 ORTHO05D008167 2.4e-74 283.1 276 56.9
EL10Ac7g16640 Beta vulgaris HOM05D006298 ORTHO05D008167 4.1e-74 282.3 298 55.0
Carub.0004s1875 Capsella rubella HOM05D006298 ORTHO05D008167 5.3e-74 282.0 290 54.8
Glyma.10G054900 Glycine max HOM05D006298 ORTHO05D008167 1.2e-73 280.8 290 56.6
Psat6g073640 Pisum sativum HOM05D006298 ORTHO05D008167 1.2e-73 280.8 251 59.4
PSO339G0145 Papaver somniferum HOM05D006298 ORTHO05D008167 5.0e-72 275.4 293 53.6
HPP92_022584 Vanilla planifolia HOM05D006298 ORTHO05D008167 5.0e-72 275.4 291 54.0
Glyma.13G142000 Glycine max HOM05D006298 ORTHO05D008167 1.4e-71 273.9 295 55.9
ATR0219G012 Amborella trichopoda HOM05D006298 ORTHO05D008167 3.2e-71 272.7 290 53.1
AUR62040336 Chenopodium quinoa HOM05D006298 ORTHO05D008167 3.2e-71 272.7 290 55.2
BcaB06g28958 Brassica carinata HOM05D006298 ORTHO05D008167 5.5e-71 271.9 289 56.1
MBI18_g02636_MAGBIO Magnolia biondii HOM05D006298 ORTHO05D008167 5.5e-71 271.9 327 50.8
A04p28210 Brassica napus HOM05D006298 ORTHO05D008167 9.4e-71 271.2 288 54.2
C04p65570 Brassica napus HOM05D006298 ORTHO05D008167 9.4e-71 271.2 288 54.2
BolC4t28046H Brassica oleracea HOM05D006298 ORTHO05D008167 9.4e-71 271.2 288 54.5
BraA04t18305Z Brassica rapa HOM05D006298 ORTHO05D008167 9.4e-71 271.2 288 54.2
PSO063G5537 Papaver somniferum HOM05D006298 ORTHO05D008167 1.2e-70 270.8 290 54.5
BcaC02g07571 Brassica carinata HOM05D006298 ORTHO05D008167 1.6e-70 270.4 288 54.5
Atru.BG.206.p Acer truncatum HOM05D006298 ORTHO05D008167 6.1e-70 268.5 201 66.7
AT2G36895 Arabidopsis thaliana HOM05D006298 ORTHO05D008167 3.0e-69 266.2 315 49.8
AUR62042070 Chenopodium quinoa HOM05D006298 ORTHO05D008167 5.1e-69 265.4 293 54.3
AUR62044331 Chenopodium quinoa HOM05D006298 ORTHO05D008167 5.1e-69 265.4 293 54.3
Os03g0152600 Oryza sativa ssp. japonica HOM05D006298 ORTHO05D008167 8.2e-67 258.1 292 53.4
Dinv35789 Davidia involucrata HOM05D006298 ORTHO05D008167 9.1e-66 254.6 232 63.4
Ah.08g211590 Amaranthus hybridus HOM05D006298 ORTHO05D008167 2.9e-64 249.6 297 50.8
Nn6g35281 Nelumbo nucifera HOM05D006298 ORTHO05D008167 4.2e-63 245.7 136 85.3
ECA248G3050 Erigeron canadensis HOM05D006298 ORTHO05D008167 4.4e-60 235.7 210 60.5
AL4G33120 Arabidopsis lyrata HOM05D006298 ORTHO05D008167 1.7e-59 233.8 289 48.8
AUR62042510 Chenopodium quinoa HOM05D006298 ORTHO05D008167 1.2e-54 217.6 132 78.0
SMO119G0246 Selaginella moellendorffii HOM05D006298 ORTHO05D008167 1.2e-54 217.6 278 45.3
Duzib093G1320 Durio zibethinus HOM05D006298 ORTHO05D008167 6.1e-54 215.3 288 49.0
unitig_26.g9235 Utricularia gibba HOM05D006298 ORTHO05D008167 8.0e-54 214.9 127 79.5
Atru.chr8.1795 Acer truncatum HOM05D006298 ORTHO05D008167 1.8e-53 213.8 110 91.8
Pp3c6_17550 Physcomitrium patens HOM05D006298 ORTHO05D008167 2.8e-51 206.5 267 45.7
Mapoly0063s0087 Marchantia polymorpha HOM05D006298 ORTHO05D008167 2.7e-49 199.9 313 39.9
Hma1.2p1_0205F.1_g086930 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 6.1e-46 188.7 197 55.3
SEGI_37587 Sequoiadendron giganteum HOM05D006298 ORTHO05D008167 1.3e-43 181.0 123 69.1
Medtr1g063100 Medicago truncatula HOM05D006298 ORTHO05D008167 1.8e-42 177.2 235 47.2
BcaC02g07569 Brassica carinata HOM05D006298 ORTHO05D008167 1.3e-40 171.0 241 46.5
Zm00001eb403160 Zea mays HOM05D006298 ORTHO05D008167 1.7e-40 170.6 206 50.0
CARHR131360 Cardamine hirsuta HOM05D006298 ORTHO05D008167 2.8e-38 163.3 90 84.4
AagrBONN_evm.TU.Sc2ySwM_228.4347 Anthoceros agrestis HOM05D006298 ORTHO05D008167 1.7e-27 127.5 152 45.4
CBR_g45378 Chara braunii HOM05D006298 ORTHO05D008167 2.2e-27 127.1 91 65.9
Thhalv10000465m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 8.3e-27 125.2 114 63.2
Cre11.g469100 Chlamydomonas reinhardtii HOM05D006298 ORTHO05D008167 1.6e-25 120.9 104 56.7
CSS0032719 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-22 109.8 102 58.8
Medtr6g035275 Medicago truncatula HOM05D006298 ORTHO05D008167 1.0e-21 108.2 57 91.2
CSS0023138 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.9e-21 105.1 81 69.1
MD12G1110600 Malus domestica HOM05D006298 ORTHO05D008167 1.7e-19 100.9 50 90.0
BcaB01g03809 Brassica carinata HOM05D006298 ORTHO05D008167 1.7e-16 90.9 139 38.8
BcaC04g19302 Brassica carinata HOM05D006298 ORTHO05D008167 3.9e-16 89.7 56 76.8
Ca_27221_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 1.2e-12 78.2 68 55.9
BcaC02g07570 Brassica carinata HOM05D006298 ORTHO05D008167 7.5e-12 75.5 38 81.6
arahy.Tifrunner.gnm1.ann1.31G0Q2 Arachis hypogaea HOM05D006298 ORTHO05D082484 1.9e-07 60.8 52 55.8
Prupe.4G234300 Prunus persica HOM05D006298 ORTHO05D007008 5.6e-07 59.3 31 83.9
Ca_27663_v3 Cicer arietinum L. HOM05D002033 ORTHO05D002181 4.7e-06 56.2 40 60.0


User provided reference genes

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