Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28384 Actinidia chinensis HOM05D000176 ORTHO05D000106 8.7e-82 307.4 212 100.0
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 5.1e-58 228.4 189 92.1
vmacro12437 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 1.8e-47 193.4 213 63.4
Dinv18200 Davidia involucrata HOM05D000176 ORTHO05D000106 3.9e-42 175.6 213 74.2
Rhsim06G0121800 Rhododendron simsii HOM05D000176 ORTHO05D000106 5.1e-42 175.3 212 66.0
CSS0002500 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 8.8e-42 174.5 115 79.1
CSS0014815 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 8.8e-42 174.5 115 79.1
Lj3C925T6 Lonicera japonica HOM05D000176 ORTHO05D000106 8.2e-32 141.4 220 45.9
Nitab4.5_0000476g0120 Nicotiana tabacum HOM05D000176 ORTHO05D000106 8.2e-32 141.4 216 41.7
Peaxi162Scf00020g02126 Petunia axillaris HOM05D000176 ORTHO05D000106 2.4e-31 139.8 212 57.1
Nitab4.5_0003663g0020 Nicotiana tabacum HOM05D000176 ORTHO05D000106 4.1e-31 139.0 216 41.2
PGSC0003DMG400023346 Solanum tuberosum HOM05D000176 ORTHO05D000106 4.1e-31 139.0 221 51.6
Peaxi162Scf00384g01218 Petunia axillaris HOM05D000176 ORTHO05D000106 1.2e-30 137.5 212 56.6
Sopen05g034420 Solanum pennellii HOM05D000176 ORTHO05D000106 1.7e-29 133.7 214 55.1
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 5.0e-29 132.1 118 64.4
CSS0045164 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 5.0e-29 132.1 118 64.4
Solyc05g056010.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 8.5e-29 131.3 214 54.7
Oeu063771.2 Olea europaea HOM05D000176 ORTHO05D000106 2.5e-28 129.8 229 38.4
QL08p043592 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-27 127.1 109 59.6
MSTRG.10797 Avicennia marina HOM05D000176 ORTHO05D000106 2.1e-27 126.7 109 61.5
Lj6g0005713 Lotus japonicus HOM05D000176 ORTHO05D000106 1.4e-26 124.0 121 54.5
CsaV3_6G015670 Cucumis sativus L. HOM05D000176 ORTHO05D000106 4.0e-26 122.5 117 53.8
Lalb_Chr15g0080531 Lupinus albus HOM05D000176 ORTHO05D000106 5.2e-26 122.1 123 52.8
MELO3C019704.2 Cucumis melo HOM05D000176 ORTHO05D000106 8.8e-26 121.3 108 56.5
Lalb_Chr20g0114151 Lupinus albus HOM05D000176 ORTHO05D000106 1.2e-25 120.9 123 53.7
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 2.0e-25 120.2 205 38.5
RcHm_v2.0_Chr2g0150841 Rosa chinensis HOM05D000176 ORTHO05D000106 2.6e-25 119.8 124 52.4
arahy.Tifrunner.gnm1.ann1.B0WW5W Arachis hypogaea HOM05D000176 ORTHO05D000106 4.4e-25 119.0 124 53.2
arahy.Tifrunner.gnm1.ann1.ZG7XLL Arachis hypogaea HOM05D000176 ORTHO05D000106 4.4e-25 119.0 124 53.2
FvH4_6g37771 Fragaria vesca HOM05D000176 ORTHO05D000106 4.4e-25 119.0 124 51.6
Sed0012746 Sechium edule HOM05D000176 ORTHO05D000106 4.4e-25 119.0 117 52.1
Ca_14624_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 5.7e-25 118.6 120 52.5
MD17G1142200 Malus domestica HOM05D000176 ORTHO05D000106 7.5e-25 118.2 120 55.0
Haze_13472 Corylus avellana HOM05D000176 ORTHO05D000106 2.2e-24 116.7 102 58.8
VMungo0540G2186 Vigna mungo HOM05D000176 ORTHO05D000106 6.3e-24 115.2 122 54.1
Cfa021595 Carpinus fangiana HOM05D000176 ORTHO05D000106 8.3e-24 114.8 101 59.4
Prupe.3G169000 Prunus persica HOM05D000176 ORTHO05D000106 2.4e-23 113.2 108 52.8
MD09G1156100 Malus domestica HOM05D000176 ORTHO05D000106 7.0e-23 111.7 123 51.2
GSVIVG01000818001 Vitis vinifera HOM05D000176 ORTHO05D000106 9.1e-23 111.3 98 62.2
Psat5g183880 Pisum sativum HOM05D000176 ORTHO05D000106 1.6e-22 110.5 110 57.3
SGA_v2.0_scaffold4221G54449 Striga asiatica HOM05D000176 ORTHO05D000106 1.6e-22 110.5 123 52.0
TPR.G1842 Trifolium pratense HOM05D000176 ORTHO05D000106 1.6e-22 110.5 109 55.0
GSVIVG01006780001 Vitis vinifera HOM05D000176 ORTHO05D000106 1.6e-22 110.5 95 63.2
Migut.K00126 Erythranthe guttata HOM05D000176 ORTHO05D000106 3.5e-22 109.4 75 73.3
Lsat_1_v5_gn_7_67341 Lactuca sativa HOM05D000176 ORTHO05D000106 3.5e-22 109.4 91 61.5
PGR042G1331 Punica granatum HOM05D000176 ORTHO05D000106 1.7e-21 107.1 111 49.5
Atru.chr6.3350 Acer truncatum HOM05D000176 ORTHO05D000106 2.2e-21 106.7 117 54.7
DCAR_021305 Daucus carota HOM05D000176 ORTHO05D000106 5.0e-21 105.5 103 56.3
TWI36G1460 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 1.2e-19 100.9 107 50.5
EL10As19g24186 Beta vulgaris HOM05D000176 ORTHO05D000106 1.0e-18 97.8 85 56.5
Dinv05007 Davidia involucrata HOM05D000176 ORTHO05D000106 1.4e-18 97.4 65 75.4
Sabra02G0169600 Salix brachista HOM05D000176 ORTHO05D000106 1.8e-18 97.1 105 49.5
Duzib211G0089 Durio zibethinus HOM05D000176 ORTHO05D000106 3.0e-18 96.3 116 50.9
ECA240G4387 Erigeron canadensis HOM05D000176 ORTHO05D000106 3.0e-18 96.3 109 46.8
Eucgr.A01958 Eucalyptus grandis HOM05D000176 ORTHO05D000106 3.0e-18 96.3 123 47.2
Ah.16g107440 Amaranthus hybridus HOM05D000176 ORTHO05D000106 5.2e-18 95.5 85 54.1
Ciclev10014335m.g Citrus clementina HOM05D000176 ORTHO05D000106 5.2e-18 95.5 100 57.0
Duzib138G0102 Durio zibethinus HOM05D000176 ORTHO05D000106 2.0e-17 93.6 116 50.9
Sc12g0003730 Simmondsia chinensis HOM05D000176 ORTHO05D000106 5.7e-17 92.0 142 41.5
Gorai.001G193000 Gossypium raimondii HOM05D000176 ORTHO05D000106 4.9e-16 89.0 116 49.1
COL.COLO4_33030 Corchorus olitorius HOM05D000176 ORTHO05D000106 2.4e-15 86.7 120 46.7
AUR62038389 Chenopodium quinoa HOM05D000176 ORTHO05D000106 3.5e-14 82.8 86 51.2
Aa31sc575G20 Aethionema arabicum HOM05D000176 ORTHO05D000106 5.9e-14 82.0 113 43.4
AUR62022514 Chenopodium quinoa HOM05D000176 ORTHO05D000106 7.7e-14 81.6 86 50.0
Hund07743 Selenicereus undatus HOM05D000176 ORTHO05D000106 1.3e-13 80.9 77 57.1
AUR62038386 Chenopodium quinoa HOM05D000176 ORTHO05D000106 2.9e-13 79.7 86 50.0
Atru.chr6.3553_Atru.chr6.3554 Acer truncatum HOM05D000176 ORTHO05D000106 3.3e-12 76.3 109 42.2
CARHR102890 Cardamine hirsuta HOM05D000176 ORTHO05D000106 3.3e-12 76.3 90 46.7
A03p44500 Brassica napus HOM05D000176 ORTHO05D000106 4.3e-12 75.9 102 43.1
C03p55310 Brassica napus HOM05D000176 ORTHO05D000106 4.3e-12 75.9 102 43.1
BolC3t17803H Brassica oleracea HOM05D000176 ORTHO05D000106 4.3e-12 75.9 102 43.1
BraA03t13583Z Brassica rapa HOM05D000176 ORTHO05D000106 4.3e-12 75.9 102 43.1
Thhalv10002429m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 4.7e-11 72.4 114 42.1
AL3G42490 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 8.0e-11 71.6 114 43.0
Sp3g23470 Schrenkiella parvula HOM05D000176 ORTHO05D000106 1.0e-10 71.2 85 47.1
AT2G04865 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 1.8e-10 70.5 113 41.6
THA.LOC104808853 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 3.0e-10 69.7 113 39.8
Actinidia04672 Actinidia chinensis HOM05D004034 ORTHO05D004210 9.2e-07 58.2 29 93.1


User provided reference genes

Program Settings