Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia25612 Actinidia chinensis HOM05D003221 ORTHO05D016442 2.8e-39 164.9 85 100.0
Actinidia25611 Actinidia chinensis HOM05D003221 ORTHO05D004432 7.4e-32 140.2 84 86.9
vmacro19238 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 1.9e-27 125.6 84 77.4
Rhsim08G0185100 Rhododendron simsii HOM05D003221 ORTHO05D004432 9.3e-27 123.2 84 75.0
Lj5A100G57 Lonicera japonica HOM05D003221 ORTHO05D004432 4.6e-26 120.9 84 75.0
vmacro01936 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 6.0e-26 120.6 84 72.6
Lsat_1_v5_gn_4_78821 Lactuca sativa HOM05D003221 ORTHO05D004432 5.1e-25 117.5 84 72.6
Prupe.5G156700 Prunus persica HOM05D003221 ORTHO05D004432 3.3e-24 114.8 84 70.2
ECA232G2465 Erigeron canadensis HOM05D003221 ORTHO05D004432 5.6e-24 114.0 84 70.2
Nn3g16577 Nelumbo nucifera HOM05D003221 ORTHO05D004432 5.6e-24 114.0 84 67.9
ClCG03G003520 Citrullus lanatus HOM05D003221 ORTHO05D004432 7.4e-24 113.6 84 69.0
HanXRQChr09g0272871 Helianthus annuus HOM05D003221 ORTHO05D004432 9.6e-24 113.2 84 67.9
Sed0024107 Sechium edule HOM05D003221 ORTHO05D004432 9.6e-24 113.2 84 69.0
HanXRQChr16g0497921 Helianthus annuus HOM05D003221 ORTHO05D004432 2.1e-23 112.1 84 69.0
Cpa.g.sc4.74 Carica papaya HOM05D003221 ORTHO05D004432 3.7e-23 111.3 84 65.5
MELO3C002335.2 Cucumis melo HOM05D003221 ORTHO05D004432 3.7e-23 111.3 84 67.9
THA.LOC104811603 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 8.2e-23 110.2 82 67.1
Lj9A475T64 Lonicera japonica HOM05D003221 ORTHO05D004432 2.4e-22 108.6 84 64.3
Nitab4.5_0006219g0010 Nicotiana tabacum HOM05D003221 ORTHO05D004432 2.4e-22 108.6 84 61.9
THA.LOC104825005 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 2.4e-22 108.6 82 67.1
TAR371G1119 Trochodendron aralioides HOM05D003221 ORTHO05D004432 2.4e-22 108.6 84 66.7
MBI11_g19363_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 3.1e-22 108.2 78 64.1
Sp7g22810 Schrenkiella parvula HOM05D003221 ORTHO05D004432 3.1e-22 108.2 82 67.1
Cc04_g10290 Coffea canephora HOM05D003221 ORTHO05D004432 4.0e-22 107.8 81 67.9
CsaV3_1G009320 Cucumis sativus L. HOM05D003221 ORTHO05D004432 4.0e-22 107.8 84 65.5
Nitab4.5_0000366g0070 Nicotiana tabacum HOM05D003221 ORTHO05D004432 4.0e-22 107.8 84 61.9
BcaC06g32856 Brassica carinata HOM05D003221 ORTHO05D004432 6.9e-22 107.1 82 67.1
C07p53800 Brassica napus HOM05D003221 ORTHO05D004432 6.9e-22 107.1 82 65.9
BolC7t45870H Brassica oleracea HOM05D003221 ORTHO05D004432 6.9e-22 107.1 82 67.1
BcaB03g12449 Brassica carinata HOM05D003221 ORTHO05D004432 9.0e-22 106.7 82 65.9
A08p21360 Brassica napus HOM05D003221 ORTHO05D004432 9.0e-22 106.7 82 65.9
C01p20120 Brassica napus HOM05D003221 ORTHO05D004432 9.0e-22 106.7 82 65.9
BraA08t34085Z Brassica rapa HOM05D003221 ORTHO05D004432 9.0e-22 106.7 82 65.9
Hma1.2p1_0209F.1_g088430 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 9.0e-22 106.7 75 72.0
MD06G1156100 Malus domestica HOM05D003221 ORTHO05D004432 9.0e-22 106.7 84 65.5
A03p55560 Brassica napus HOM05D003221 ORTHO05D004432 1.2e-21 106.3 82 65.9
BraA03t14625Z Brassica rapa HOM05D003221 ORTHO05D004432 1.2e-21 106.3 82 65.9
MD14G1163300 Malus domestica HOM05D003221 ORTHO05D004432 1.2e-21 106.3 84 65.5
RcHm_v2.0_Chr7g0191061 Rosa chinensis HOM05D003221 ORTHO05D004432 1.5e-21 105.9 84 64.3
AL7G28360 Arabidopsis lyrata HOM05D003221 ORTHO05D004432 2.6e-21 105.1 82 65.9
A01p16130 Brassica napus HOM05D003221 ORTHO05D004432 2.6e-21 105.1 82 64.6
BolC1t01941H Brassica oleracea HOM05D003221 ORTHO05D004432 2.6e-21 105.1 82 64.6
BraA01t01549Z Brassica rapa HOM05D003221 ORTHO05D004432 2.6e-21 105.1 82 64.6
Thhalv10025431m.g Eutrema salsugineum HOM05D003221 ORTHO05D004432 2.6e-21 105.1 82 65.9
Potri.015G090900 Populus trichocarpa HOM05D003221 ORTHO05D004432 2.6e-21 105.1 84 61.9
Actinidia16191 Actinidia chinensis HOM05D003221 ORTHO05D004432 3.4e-21 104.8 65 84.6
A09p13870 Brassica napus HOM05D003221 ORTHO05D016442 3.4e-21 104.8 83 65.1
FAN16G0231 Fragaria x ananassa HOM05D003221 ORTHO05D004432 3.4e-21 104.8 84 63.1
FAN21G3720 Fragaria x ananassa HOM05D003221 ORTHO05D004432 3.4e-21 104.8 84 63.1
FAN25G3633 Fragaria x ananassa HOM05D003221 ORTHO05D004432 3.4e-21 104.8 84 63.1
PGR083G1499 Punica granatum HOM05D003221 ORTHO05D004432 3.4e-21 104.8 84 63.1
BcaC07g38153 Brassica carinata HOM05D003221 ORTHO05D004432 4.5e-21 104.4 82 64.6
BolC8t48588H Brassica oleracea HOM05D003221 ORTHO05D004432 4.5e-21 104.4 82 64.6
MSTRG.22924 Avicennia marina HOM05D003221 ORTHO05D004432 5.8e-21 104.0 84 61.9
SGA_v2.0_scaffold350G49637 Striga asiatica HOM05D003221 ORTHO05D004432 5.8e-21 104.0 84 61.9
BcaNung07243 Brassica carinata HOM05D003221 ORTHO05D004432 7.6e-21 103.6 82 63.4
MD06G1151500 Malus domestica HOM05D003221 ORTHO05D004432 7.6e-21 103.6 84 64.3
Migut.I00477 Erythranthe guttata HOM05D003221 ORTHO05D004432 1.0e-20 103.2 84 60.7
Hma1.2p1_0046F.1_g027520 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 1.3e-20 102.8 71 73.2
Potri.012G093500 Populus trichocarpa HOM05D003221 ORTHO05D004432 1.3e-20 102.8 84 60.7
Sed0014675 Sechium edule HOM05D003221 ORTHO05D004432 2.2e-20 102.1 72 70.8
MSTRG.4587 Avicennia marina HOM05D003221 ORTHO05D004432 2.9e-20 101.7 84 59.5
Carub.0007s1623 Capsella rubella HOM05D003221 ORTHO05D004432 2.9e-20 101.7 82 63.4
CDE04G0976 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 2.9e-20 101.7 84 59.5
Manes.14G055233 Manihot esculenta HOM05D003221 ORTHO05D004432 2.9e-20 101.7 84 59.5
Oeu058314.2 Olea europaea HOM05D003221 ORTHO05D016442 2.9e-20 101.7 82 61.0
Sabra15G0113000 Salix brachista HOM05D003221 ORTHO05D004432 2.9e-20 101.7 84 59.5
Aa31LG7G11020 Aethionema arabicum HOM05D003221 ORTHO05D004432 3.8e-20 101.3 77 68.8
FAN11G1198 Fragaria x ananassa HOM05D003221 ORTHO05D004432 3.8e-20 101.3 84 60.7
Aqoxy1G01463 Aquilegia oxysepala HOM05D003221 ORTHO05D004432 6.5e-20 100.5 84 60.7
CAN.G5443.1 Capsicum annuum HOM05D003221 ORTHO05D004432 6.5e-20 100.5 84 58.3
PSO445G0024 Papaver somniferum HOM05D003221 ORTHO05D004432 6.5e-20 100.5 84 57.1
Ah.15g095310 Amaranthus hybridus HOM05D003221 ORTHO05D004432 8.4e-20 100.1 84 64.3
Eucgr.I00301 Eucalyptus grandis HOM05D003221 ORTHO05D004432 8.4e-20 100.1 84 58.3
Eucgr.K02756 Eucalyptus grandis HOM05D003221 ORTHO05D004432 8.4e-20 100.1 84 57.1
QL10p005036 Quercus lobata HOM05D003221 ORTHO05D004432 8.4e-20 100.1 84 59.5
CAN.G990.3 Capsicum annuum HOM05D003221 ORTHO05D016442 1.1e-19 99.8 82 58.5
FvH4_3g25540 Fragaria vesca HOM05D003221 ORTHO05D004432 1.1e-19 99.8 84 59.5
unitig_747.g21330 Utricularia gibba HOM05D003221 ORTHO05D004432 1.4e-19 99.4 80 61.2
CANSAT80G0340 Cannabis sativa HOM05D003221 ORTHO05D004432 1.9e-19 99.0 78 65.4
Manes.06G115400 Manihot esculenta HOM05D003221 ORTHO05D004432 1.9e-19 99.0 84 58.3
CARHR232220 Cardamine hirsuta HOM05D003221 ORTHO05D004432 3.2e-19 98.2 82 59.8
TWI39G0859 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 3.2e-19 98.2 84 57.1
AT4G24820 Arabidopsis thaliana HOM05D003221 ORTHO05D004432 5.5e-19 97.4 82 62.2
Duzib084G0381 Durio zibethinus HOM05D003221 ORTHO05D004432 5.5e-19 97.4 85 60.0
PSO170G4862 Papaver somniferum HOM05D003221 ORTHO05D004432 5.5e-19 97.4 84 56.0
DCAR_027511 Daucus carota HOM05D003221 ORTHO05D004432 7.1e-19 97.1 84 60.7
TWI14G1333 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 7.1e-19 97.1 84 58.3
Peaxi162Scf00324g00334 Petunia axillaris HOM05D003221 ORTHO05D004432 1.2e-18 96.3 84 57.1
CDE07G0656 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 2.1e-18 95.5 84 57.1
Cfa018890 Carpinus fangiana HOM05D003221 ORTHO05D004432 2.7e-18 95.1 84 59.5
Haze_07275 Corylus avellana HOM05D003221 ORTHO05D004630 2.7e-18 95.1 84 59.5
Lalb_Chr08g0236971 Lupinus albus HOM05D003221 ORTHO05D004432 2.7e-18 95.1 84 58.3
Solyc07g009140.3 Solanum lycopersicum HOM05D003221 ORTHO05D004432 2.7e-18 95.1 84 54.8
Sopen07g017130 Solanum pennellii HOM05D003221 ORTHO05D004432 2.7e-18 95.1 84 54.8
PGSC0003DMG402024210 Solanum tuberosum HOM05D003221 ORTHO05D004432 2.7e-18 95.1 84 54.8
Atru.chr9.1015 Acer truncatum HOM05D003221 ORTHO05D004432 3.5e-18 94.7 73 65.8
PSO063G7046 Papaver somniferum HOM05D003221 ORTHO05D004432 3.5e-18 94.7 84 53.6
ATR0824G170 Amborella trichopoda HOM05D003221 ORTHO05D004432 4.6e-18 94.4 82 56.1
EL10Ac7g18076 Beta vulgaris HOM05D003221 ORTHO05D004432 4.6e-18 94.4 82 59.8
PSO782G0707 Papaver somniferum HOM05D003221 ORTHO05D004432 4.6e-18 94.4 84 54.8
PGSC0003DMG401024210 Solanum tuberosum HOM05D003221 ORTHO05D016442 6.0e-18 94.0 82 54.9
HPP92_024650 Vanilla planifolia HOM05D003221 ORTHO05D016442 6.0e-18 94.0 85 55.3
Dinv11105 Davidia involucrata HOM05D003221 ORTHO05D004432 7.9e-18 93.6 66 69.7
HPP92_024646 Vanilla planifolia HOM05D003221 ORTHO05D004432 7.9e-18 93.6 84 54.8
Gohir.A12G188100 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.0e-17 93.2 85 57.6
COL.COLO4_22963 Corchorus olitorius HOM05D003221 ORTHO05D004432 1.3e-17 92.8 85 57.6
Dinv38467 Davidia involucrata HOM05D003221 ORTHO05D004432 1.3e-17 92.8 65 72.3
Sc04g0000950 Simmondsia chinensis HOM05D003221 ORTHO05D004432 2.3e-17 92.0 84 56.0
VMungo1215G0589 Vigna mungo HOM05D003221 ORTHO05D004432 3.0e-17 91.7 84 52.4
Gohir.D09G245900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 3.9e-17 91.3 85 57.6
Gorai.006G270400 Gossypium raimondii HOM05D003221 ORTHO05D004432 3.9e-17 91.3 85 57.6
Phvul.003G208200 Phaseolus vulgaris HOM05D003221 ORTHO05D004432 5.1e-17 90.9 84 51.2
CiPaw.12G035900 Carya illinoinensis HOM05D003221 ORTHO05D004432 6.7e-17 90.5 79 58.2
AUR62025726 Chenopodium quinoa HOM05D003221 ORTHO05D004432 6.7e-17 90.5 84 57.1
Gohir.A09G245000 Gossypium hirsutum HOM05D003221 ORTHO05D004432 6.7e-17 90.5 85 55.3
Gohir.D12G190900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 6.7e-17 90.5 85 56.5
Gorai.008G204800 Gossypium raimondii HOM05D003221 ORTHO05D004432 6.7e-17 90.5 85 56.5
Hund05648 Selenicereus undatus HOM05D003221 ORTHO05D004432 8.7e-17 90.1 93 52.7
AUR62001280 Chenopodium quinoa HOM05D003221 ORTHO05D004432 1.1e-16 89.7 84 57.1
Gohir.A03G062400 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.1e-16 89.7 85 56.5
QL05p040991 Quercus lobata HOM05D003221 ORTHO05D004432 1.1e-16 89.7 73 60.3
GSVIVG01007538001 Vitis vinifera HOM05D003221 ORTHO05D004432 1.5e-16 89.4 70 62.9
Nn4g22458 Nelumbo nucifera HOM05D003221 ORTHO05D004432 3.3e-16 88.2 68 63.2
SEGI_11838 Sequoiadendron giganteum HOM05D003221 ORTHO05D004432 4.3e-16 87.8 84 54.8
Gohir.D03G103700 Gossypium hirsutum HOM05D003221 ORTHO05D004432 5.7e-16 87.4 85 55.3
Gorai.003G109300 Gossypium raimondii HOM05D003221 ORTHO05D004432 5.7e-16 87.4 85 55.3
Psat0s5008g0040 Pisum sativum HOM05D003221 ORTHO05D016442 5.7e-16 87.4 81 55.6
SEGI_29907 Sequoiadendron giganteum HOM05D003221 ORTHO05D016442 1.3e-15 86.3 84 53.6
Duzib068G0069 Durio zibethinus HOM05D003221 ORTHO05D004432 1.6e-15 85.9 85 51.8
Ah.08g218090 Amaranthus hybridus HOM05D003221 ORTHO05D004432 2.2e-15 85.5 71 63.4
Duzib205G0731 Durio zibethinus HOM05D003221 ORTHO05D004432 2.8e-15 85.1 85 54.1
Lj4g0007668 Lotus japonicus HOM05D003221 ORTHO05D004432 2.8e-15 85.1 78 52.6
Thecc.03G123100 Theobroma cacao HOM05D003221 ORTHO05D004432 2.8e-15 85.1 78 56.4
Os02g0600100 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 4.8e-15 84.3 82 47.6
Os04g0485000 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 8.2e-15 83.6 82 48.8
Lj5g0004669 Lotus japonicus HOM05D003221 ORTHO05D004432 1.1e-14 83.2 77 53.2
Ciclev10020559m.g Citrus clementina HOM05D003221 ORTHO05D004432 1.4e-14 82.8 69 62.3
SHI33980 Sapria himalayana HOM05D003221 ORTHO05D004432 2.4e-14 82.0 84 48.8
SalBow5G2462 Salvia bowleyana HOM05D003221 ORTHO05D004432 5.3e-14 80.9 64 62.5
Zm00001eb246330 Zea mays HOM05D003221 ORTHO05D004432 5.3e-14 80.9 82 47.6
TPR.G37528 Trifolium pratense HOM05D003221 ORTHO05D004432 9.0e-14 80.1 83 53.0
Oeu033323.1 Olea europaea HOM05D003221 ORTHO05D004432 3.8e-12 74.7 64 59.4
Glyma.05G044500 Glycine max HOM05D003221 ORTHO05D004432 6.5e-12 73.9 70 50.0
arahy.Tifrunner.gnm1.ann1.BX07LP Arachis hypogaea HOM05D003221 ORTHO05D004432 4.2e-11 71.2 66 53.0
arahy.Tifrunner.gnm1.ann1.UKG7ME Arachis hypogaea HOM05D003221 ORTHO05D004432 4.2e-11 71.2 66 53.0
Glyma.17G127100 Glycine max HOM05D003221 ORTHO05D004432 7.2e-11 70.5 66 51.5
Lalb_Chr23g0273491 Lupinus albus HOM05D003221 ORTHO05D004432 7.2e-11 70.5 66 56.1
AagrBONN_evm.TU.Sc2ySwM_344.2231 Anthoceros agrestis HOM05D003221 ORTHO05D004432 2.7e-10 68.6 84 40.5
Lalb_Chr07g0183231 Lupinus albus HOM05D003221 ORTHO05D004432 3.6e-10 68.2 68 50.0
TPR.G16844 Trifolium pratense HOM05D003221 ORTHO05D004432 7.9e-10 67.0 65 55.4
Os01g0974900 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D016442 1.0e-09 66.6 75 41.3
Pp3c10_7470 Physcomitrium patens HOM05D003221 ORTHO05D004432 1.0e-09 66.6 84 41.7
Ca_05563_v3 Cicer arietinum L. HOM05D003221 ORTHO05D004432 3.0e-09 65.1 66 51.5
Medtr4g104080 Medicago truncatula HOM05D003221 ORTHO05D004432 3.9e-09 64.7 65 49.2
Pp3c12_14600 Physcomitrium patens HOM05D003221 ORTHO05D004432 1.1e-08 63.2 84 42.9
SMO118G0024 Selaginella moellendorffii HOM05D003221 ORTHO05D004432 3.3e-08 61.6 77 41.6
Glyma.05G044900 Glycine max HOM05D003221 ORTHO05D004432 1.8e-06 55.8 63 44.4
Os02g0599151 Oryza sativa ssp. japonica HOM05D002088 ORTHO05D294445 2.4e-06 55.5 58 43.1
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 3.1e-06 55.1 38 68.4
Pp3c4_2100 Physcomitrium patens HOM05D003221 ORTHO05D004432 4.1e-06 54.7 68 45.6


User provided reference genes

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