Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 8.1e-216 753.4 376 100.0
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 2.1e-78 297.0 162 92.0
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 5.3e-58 229.2 180 67.2
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.4e-50 203.8 158 69.0
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 3.6e-46 189.9 165 65.5
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 6.1e-46 189.1 181 58.0
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.4e-45 188.0 166 62.0
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.4e-45 188.0 163 63.8
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 7.5e-44 182.2 164 62.2
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 8.3e-43 178.7 164 61.6
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 4.1e-42 176.4 164 61.6
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 2.9e-40 170.2 206 49.5
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.9e-40 170.2 167 56.3
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 5.0e-40 169.5 161 55.9
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 8.5e-40 168.7 173 56.6
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 1.5e-39 167.9 169 54.4
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 1.9e-39 167.5 165 54.5
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.5e-39 167.2 214 49.5
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 4.2e-39 166.4 206 51.0
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 9.4e-39 165.2 172 57.0
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.6e-38 163.3 164 57.9
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 8.0e-38 162.2 162 53.7
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.4e-37 161.4 216 49.1
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 1.4e-37 161.4 178 49.4
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 2.3e-37 160.6 177 53.7
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.0e-37 160.2 164 56.7
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.2e-37 159.5 164 56.7
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 5.2e-37 159.5 174 54.0
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 6.8e-37 159.1 185 54.1
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 6.8e-37 159.1 212 48.6
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 8.8e-37 158.7 168 52.4
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 2.0e-36 157.5 184 52.2
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 2.0e-36 157.5 161 59.6
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 3.4e-36 156.8 156 55.1
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 3.4e-36 156.8 190 50.5
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 7.5e-36 155.6 164 53.0
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 9.8e-36 155.2 212 47.6
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 2.2e-35 154.1 158 55.7
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 2.8e-35 153.7 186 51.1
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.8e-35 153.7 170 51.2
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 6.3e-35 152.5 212 47.6
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.3e-35 152.5 165 53.3
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 8.3e-35 152.1 207 47.3
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 8.3e-35 152.1 178 51.1
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 1.1e-34 151.8 170 51.2
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 3.1e-34 150.2 207 46.9
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 1.6e-33 147.9 170 49.4
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 1.0e-32 145.2 160 52.5
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 1.3e-32 144.8 166 53.6
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.3e-32 144.8 159 54.1
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 1.7e-32 144.4 171 52.0
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.7e-32 144.4 179 51.4
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 2.3e-32 144.1 168 50.6
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 2.3e-32 144.1 167 51.5
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 3.8e-32 143.3 180 48.3
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 3.8e-32 143.3 170 49.4
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 5.0e-32 142.9 218 43.6
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 8.6e-32 142.1 178 48.9
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 8.6e-32 142.1 182 48.9
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 8.6e-32 142.1 186 47.3
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 1.9e-31 141.0 172 48.8
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.9e-31 141.0 172 48.8
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.9e-31 141.0 158 56.3
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.5e-31 140.6 155 53.5
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 4.3e-31 139.8 195 46.2
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 5.6e-31 139.4 157 52.2
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 7.3e-31 139.0 163 49.7
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 7.3e-31 139.0 204 45.1
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 7.3e-31 139.0 174 47.1
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 7.3e-31 139.0 161 53.4
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 9.5e-31 138.7 161 50.3
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.2e-30 138.3 182 47.8
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.6e-30 137.9 181 49.2
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 2.1e-30 137.5 180 46.7
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 2.8e-30 137.1 163 52.1
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 3.6e-30 136.7 158 54.4
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 6.1e-30 136.0 162 51.2
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 6.1e-30 136.0 204 46.1
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 6.1e-30 136.0 164 50.0
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 8.0e-30 135.6 192 41.7
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 1.0e-29 135.2 182 46.7
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 1.4e-29 134.8 163 52.1
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.4e-29 134.8 159 49.7
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 2.3e-29 134.0 171 51.5
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 2.3e-29 134.0 212 43.4
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.0e-29 133.7 201 44.3
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 4.0e-29 133.3 214 42.5
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 4.0e-29 133.3 166 48.2
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 5.2e-29 132.9 167 49.7
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.6e-28 130.6 162 51.2
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.4e-28 130.2 171 50.9
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.4e-28 129.8 203 44.8
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 5.7e-28 129.4 168 48.8
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 7.5e-28 129.0 175 47.4
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 2.9e-27 127.1 159 49.7
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 3.7e-27 126.7 169 47.9
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 4.9e-27 126.3 208 41.8
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 8.3e-27 125.6 168 47.0
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.1e-26 125.2 159 49.1
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 1.4e-26 124.8 160 52.5
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 2.4e-26 124.0 191 45.5
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 5.4e-26 122.9 172 48.3
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 9.2e-26 122.1 188 43.1
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 3.5e-25 120.2 153 47.7
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 4.6e-25 119.8 159 45.9
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 4.6e-25 119.8 159 45.9
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 4.6e-25 119.8 157 46.5
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.0e-24 118.6 157 48.4
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 1.7e-24 117.9 156 49.4
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 1.7e-24 117.9 215 42.3
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 2.3e-24 117.5 158 48.7
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 2.3e-24 117.5 149 51.0
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 6.6e-24 115.9 157 45.2
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 1.5e-23 114.8 204 40.7
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 1.9e-23 114.4 167 46.7
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 2.5e-23 114.0 163 42.9
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.3e-23 113.6 190 41.1
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.3e-23 113.6 190 41.1
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 7.3e-23 112.5 159 45.3
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 9.5e-23 112.1 221 37.1
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 9.5e-23 112.1 202 40.1
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 2.1e-22 110.9 166 43.4
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 3.6e-22 110.2 169 44.4
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 8.0e-22 109.0 219 37.4
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 8.0e-22 109.0 221 37.1
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 8.0e-22 109.0 157 42.7
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 1.8e-21 107.8 219 36.1
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 2.3e-21 107.5 157 45.9
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.2e-21 106.3 132 49.2
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 8.9e-21 105.5 160 45.6
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 1.2e-20 105.1 162 46.3
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 1.3e-19 101.7 157 40.1
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 1.3e-19 101.7 161 43.5
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 2.9e-19 100.5 153 40.5
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 3.7e-19 100.1 162 38.9
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 8.3e-19 99.0 166 44.0
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.1e-18 98.6 155 42.6
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 1.9e-18 97.8 153 40.5
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 1.9e-18 97.8 162 37.0
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 1.9e-18 97.8 153 40.5
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 5.4e-18 96.3 154 38.3
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 4.6e-17 93.2 175 44.0
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 2.3e-16 90.9 177 44.6
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 3.9e-16 90.1 159 40.3
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 5.0e-16 89.7 163 38.7
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 8.6e-16 89.0 156 39.1
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 8.6e-16 89.0 209 38.3
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 4.3e-15 86.7 156 39.1
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 1.4e-13 81.6 98 49.0
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 2.3e-13 80.9 168 36.9
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.5e-12 78.2 159 40.3
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 7.5e-12 75.9 158 39.2
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 9.8e-12 75.5 236 30.1
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 9.8e-12 75.5 161 36.0
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 4.9e-11 73.2 160 33.1
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 8.3e-11 72.4 160 33.8
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 5.4e-10 69.7 69 53.6
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 3.0e-08 63.9 233 25.3
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 1.1e-07 62.0 135 38.5
VMungo0540G2292 Vigna mungo HOM05D004016 ORTHO05D004732 1.9e-07 61.2 85 45.9
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 7.3e-07 59.3 73 46.6
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 2.1e-06 57.8 41 65.9


User provided reference genes

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