Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia24871 Actinidia chinensis HOM05D002930 ORTHO05D003283 4.6e-200 701.0 359 100.0
vmacro14944 Vaccinium macrocarpon HOM05D002930 ORTHO05D003283 9.0e-47 191.8 367 35.7
CSS0023451 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 5.8e-46 189.1 371 36.4
CSS0004978 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 1.7e-45 187.6 369 35.8
Dinv11268 Davidia involucrata HOM05D002930 ORTHO05D003283 3.9e-42 176.4 359 34.3
Actinidia21090 Actinidia chinensis HOM05D002930 ORTHO05D003283 1.3e-40 171.4 257 47.1
Haze_04772 Corylus avellana HOM05D002930 ORTHO05D003283 8.2e-40 168.7 95 78.9
Cfa006078 Carpinus fangiana HOM05D002930 ORTHO05D003283 5.3e-39 166.0 95 77.9
Hma1.2p1_2318F.1_g319800 Hydrangea macrophylla HOM05D002930 ORTHO05D003283 9.0e-39 165.2 97 74.2
Duzib138G0507 Durio zibethinus HOM05D002930 ORTHO05D003283 2.0e-38 164.1 104 68.3
Gohir.D08G203100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.7e-37 161.0 104 65.4
Gorai.004G215100 Gossypium raimondii HOM05D002930 ORTHO05D003283 1.7e-37 161.0 104 65.4
QL12p022973 Quercus lobata HOM05D002930 ORTHO05D003283 2.2e-37 160.6 94 74.5
Oeu047489.1 Olea europaea HOM05D002930 ORTHO05D003283 1.1e-36 158.3 103 68.0
Thecc.01G286000 Theobroma cacao HOM05D002930 ORTHO05D003283 1.1e-36 158.3 95 71.6
Gohir.A08G184980 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.2e-36 156.4 104 63.5
Manes.05G071700 Manihot esculenta HOM05D002930 ORTHO05D003283 9.3e-36 155.2 98 68.4
Potri.014G137200 Populus trichocarpa HOM05D002930 ORTHO05D003283 1.2e-35 154.8 98 67.3
GSVIVG01011059001 Vitis vinifera HOM05D002930 ORTHO05D003283 1.2e-35 154.8 97 69.1
Cpa.g.sc9.131 Carica papaya HOM05D002930 ORTHO05D003283 2.1e-35 154.1 97 67.0
Nn3g21179 Nelumbo nucifera HOM05D002930 ORTHO05D003283 2.1e-35 154.1 97 67.0
TAR365G0233 Trochodendron aralioides HOM05D002930 ORTHO05D003283 2.1e-35 154.1 359 31.5
Sabra14G0103600 Salix brachista HOM05D002930 ORTHO05D003283 2.7e-35 153.7 98 66.3
TPR.G13301 Trifolium pratense HOM05D002930 ORTHO05D003283 3.5e-35 153.3 97 68.0
Solyc09g074110.4 Solanum lycopersicum HOM05D002930 ORTHO05D003283 4.6e-35 152.9 98 68.4
CAN.G956.11 Capsicum annuum HOM05D002930 ORTHO05D003283 7.9e-35 152.1 98 68.4
Glyma.02G150200 Glycine max HOM05D002930 ORTHO05D003283 1.0e-34 151.8 97 67.0
Sopen09g028930 Solanum pennellii HOM05D002930 ORTHO05D003283 1.0e-34 151.8 98 67.3
ECA236G2879 Erigeron canadensis HOM05D002930 ORTHO05D003283 1.3e-34 151.4 87 77.0
Lsat_1_v5_gn_8_55460 Lactuca sativa HOM05D002930 ORTHO05D003283 1.8e-34 151.0 92 72.8
Prupe.8G248000 Prunus persica HOM05D002930 ORTHO05D003283 1.8e-34 151.0 87 72.4
MSTRG.17432 Avicennia marina HOM05D002930 ORTHO05D003283 2.3e-34 150.6 97 67.0
Psat6g169840 Pisum sativum HOM05D002930 ORTHO05D003283 2.3e-34 150.6 95 69.5
Atru.chr5.1328 Acer truncatum HOM05D002930 ORTHO05D003283 3.0e-34 150.2 95 68.4
MD03G1271800 Malus domestica HOM05D002930 ORTHO05D003283 5.1e-34 149.4 87 72.4
Sed0024970 Sechium edule HOM05D002930 ORTHO05D003283 5.1e-34 149.4 93 69.9
Glyma.10G023700 Glycine max HOM05D002930 ORTHO05D003283 6.7e-34 149.1 97 66.0
Nitab4.5_0002927g0030 Nicotiana tabacum HOM05D002930 ORTHO05D003283 6.7e-34 149.1 98 66.3
Peaxi162Scf00941g00113 Petunia axillaris HOM05D002930 ORTHO05D003283 6.7e-34 149.1 98 67.3
SGA_v2.0_scaffold11G05785 Striga asiatica HOM05D002930 ORTHO05D003283 6.7e-34 149.1 98 61.2
Aa31LG1G29470 Aethionema arabicum HOM05D002930 ORTHO05D003283 8.7e-34 148.7 88 71.6
Migut.N02138 Erythranthe guttata HOM05D002930 ORTHO05D003283 8.7e-34 148.7 89 69.7
Medtr1g089760 Medicago truncatula HOM05D002930 ORTHO05D003283 1.1e-33 148.3 95 68.4
Sc05g0005220 Simmondsia chinensis HOM05D002930 ORTHO05D003283 1.1e-33 148.3 97 66.0
Hma1.2p1_0628F.1_g191750 Hydrangea macrophylla HOM05D002930 ORTHO05D003283 1.5e-33 147.9 267 38.2
THA.LOC104802222 Tarenaya hassleriana HOM05D002930 ORTHO05D003283 1.5e-33 147.9 99 68.7
Nitab4.5_0001323g0140 Nicotiana tabacum HOM05D002930 ORTHO05D003283 1.9e-33 147.5 98 65.3
TWI59G1251 Tripterygium wilfordii HOM05D002930 ORTHO05D003283 1.9e-33 147.5 98 65.3
VMungo0720G1730 Vigna mungo HOM05D002930 ORTHO05D003283 1.9e-33 147.5 95 68.4
EL10Ac7g17191 Beta vulgaris HOM05D002930 ORTHO05D003283 2.5e-33 147.1 94 67.0
CARHR143440 Cardamine hirsuta HOM05D002930 ORTHO05D003283 2.5e-33 147.1 93 69.9
ClCG09G006750 Citrullus lanatus HOM05D002930 ORTHO05D003283 2.5e-33 147.1 93 71.0
MELO3C015874.2 Cucumis melo HOM05D002930 ORTHO05D003283 2.5e-33 147.1 93 71.0
CANSAT25G2793 Cannabis sativa HOM05D002930 ORTHO05D003283 3.3e-33 146.7 94 67.0
SalBow6G0735 Salvia bowleyana HOM05D002930 ORTHO05D003283 4.3e-33 146.4 98 62.2
Sed0017862 Sechium edule HOM05D002930 ORTHO05D003283 4.3e-33 146.4 93 69.9
AL4G47650 Arabidopsis lyrata HOM05D002930 ORTHO05D003283 5.7e-33 146.0 93 68.8
AT2G48060 Arabidopsis thaliana HOM05D002930 ORTHO05D003283 5.7e-33 146.0 93 68.8
Thhalv10001278m.g Eutrema salsugineum HOM05D002930 ORTHO05D003283 5.7e-33 146.0 93 68.8
MD11G1292400 Malus domestica HOM05D002930 ORTHO05D003283 5.7e-33 146.0 92 67.4
Lalb_Chr21g0306621 Lupinus albus HOM05D002930 ORTHO05D003283 7.4e-33 145.6 97 66.0
Carub.0004s3076 Capsella rubella HOM05D002930 ORTHO05D003283 9.7e-33 145.2 93 68.8
Ciclev10018445m.g Citrus clementina HOM05D002930 ORTHO05D003283 9.7e-33 145.2 94 71.3
Aqoxy5G00565 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 1.3e-32 144.8 95 65.3
SalBow3G3307 Salvia bowleyana HOM05D002930 ORTHO05D003283 1.3e-32 144.8 97 61.9
Aqoxy211s003 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 1.6e-32 144.4 368 30.2
Aqoxy2G03186 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 1.6e-32 144.4 368 30.2
Aa31LG10G16860 Aethionema arabicum HOM05D002930 ORTHO05D003283 2.2e-32 144.1 93 68.8
Phvul.007G168500 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 2.2e-32 144.1 95 65.3
Sp4g29950 Schrenkiella parvula HOM05D002930 ORTHO05D003283 2.2e-32 144.1 97 67.0
Lsat_1_v5_gn_9_1821 Lactuca sativa HOM05D002930 ORTHO05D003283 2.8e-32 143.7 95 62.1
CsaV3_7G028480 Cucumis sativus L. HOM05D002930 ORTHO05D003283 3.7e-32 143.3 88 72.7
FAN15G2723 Fragaria x ananassa HOM05D002930 ORTHO05D003283 3.7e-32 143.3 92 66.3
BraA04t18952Z Brassica rapa HOM05D002930 ORTHO05D003283 6.3e-32 142.5 97 66.0
FAN27G1593 Fragaria x ananassa HOM05D002930 ORTHO05D003283 6.3e-32 142.5 92 66.3
CiPaw.07G096000 Carya illinoinensis HOM05D002930 ORTHO05D003283 8.2e-32 142.1 99 62.6
Lj1A43T58 Lonicera japonica HOM05D002930 ORTHO05D003283 1.4e-31 141.4 97 66.0
RcHm_v2.0_Chr6g0291991 Rosa chinensis HOM05D002930 ORTHO05D003283 1.4e-31 141.4 92 64.1
BolC4t28786H Brassica oleracea HOM05D002930 ORTHO05D003283 1.8e-31 141.0 97 64.9
AUR62033688 Chenopodium quinoa HOM05D002930 ORTHO05D003283 2.4e-31 140.6 94 63.8
FvH4_2g24180 Fragaria vesca HOM05D002930 ORTHO05D003283 4.1e-31 139.8 92 65.2
BcaB02g08731 Brassica carinata HOM05D002930 ORTHO05D003283 5.3e-31 139.4 93 65.6
BNapus_Darmor_BZH_scaffold_188p00030 Brassica napus HOM05D002930 ORTHO05D003283 5.3e-31 139.4 93 65.6
BolSC55t61233H Brassica oleracea HOM05D002930 ORTHO05D003283 5.3e-31 139.4 93 65.6
Eucgr.H01545 Eucalyptus grandis HOM05D002930 ORTHO05D003283 5.3e-31 139.4 93 63.4
Lj5g0012178 Lotus japonicus HOM05D002930 ORTHO05D003283 5.3e-31 139.4 95 64.2
BcaC02g12557 Brassica carinata HOM05D002930 ORTHO05D003283 9.0e-31 138.7 93 66.7
FAN24G0623 Fragaria x ananassa HOM05D002930 ORTHO05D003283 9.0e-31 138.7 92 64.1
HanXRQChr04g0117981 Helianthus annuus HOM05D002930 ORTHO05D003283 9.0e-31 138.7 87 69.0
AUR62036777 Chenopodium quinoa HOM05D002930 ORTHO05D003283 1.5e-30 137.9 94 62.8
A05p00070 Brassica napus HOM05D002930 ORTHO05D003283 2.6e-30 137.1 93 64.5
BraA05t19003Z Brassica rapa HOM05D002930 ORTHO05D003283 2.6e-30 137.1 93 64.5
Gorai.007G133300 Gossypium raimondii HOM05D002930 ORTHO05D003283 5.9e-30 136.0 104 59.6
MBI19_g21645_MAGBIO Magnolia biondii HOM05D002930 ORTHO05D003283 5.9e-30 136.0 97 59.8
Ah.08g212870 Amaranthus hybridus HOM05D002930 ORTHO05D003283 7.7e-30 135.6 94 60.6
Gohir.A11G119600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 7.7e-30 135.6 104 59.6
DCAR_018381 Daucus carota HOM05D002930 ORTHO05D003283 1.3e-29 134.8 85 69.4
Gohir.D11G124400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.3e-29 134.8 104 58.7
HanXRQChr15g0466571 Helianthus annuus HOM05D002930 ORTHO05D003283 2.2e-29 134.0 88 63.6
PSO210G3942 Papaver somniferum HOM05D002930 ORTHO05D003283 2.2e-29 134.0 93 61.3
arahy.Tifrunner.gnm1.ann1.M1RB0X Arachis hypogaea HOM05D002930 ORTHO05D003283 3.8e-29 133.3 96 60.4
PSO170G5253 Papaver somniferum HOM05D002930 ORTHO05D003283 6.5e-29 132.5 95 60.0
PSO302G0276 Papaver somniferum HOM05D002930 ORTHO05D003283 2.5e-28 130.6 95 60.0
SGA_v2.0_scaffold172G39040 Striga asiatica HOM05D002930 ORTHO05D003283 3.2e-28 130.2 101 60.4
Hund05360 Selenicereus undatus HOM05D002930 ORTHO05D003283 4.2e-28 129.8 94 60.6
ATR0626G265 Amborella trichopoda HOM05D002930 ORTHO05D003283 7.2e-28 129.0 96 56.2
Zm00001eb131990 Zea mays HOM05D002930 ORTHO05D003283 7.2e-28 129.0 97 55.7
GSVIVG01022038001 Vitis vinifera HOM05D002930 ORTHO05D003283 3.6e-27 126.7 99 53.5
Dinv40246 Davidia involucrata HOM05D002930 ORTHO05D003283 4.6e-27 126.3 92 58.7
DCAR_012456 Daucus carota HOM05D002930 ORTHO05D003283 5.1e-26 122.9 94 59.6
PGR119G1041 Punica granatum HOM05D002930 ORTHO05D003283 6.7e-26 122.5 87 64.4
CSS0031973 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 1.5e-25 121.3 98 54.1
HPP92_025233 Vanilla planifolia HOM05D002930 ORTHO05D003283 2.5e-25 120.6 94 55.3
unitig_744.g24487 Utricularia gibba HOM05D002930 ORTHO05D003283 7.4e-25 119.0 87 57.5
PGR083G0736 Punica granatum HOM05D002930 ORTHO05D003283 9.7e-25 118.6 93 52.7
Eucgr.B02004 Eucalyptus grandis HOM05D002930 ORTHO05D003283 1.3e-24 118.2 92 54.3
Potri.005G037700 Populus trichocarpa HOM05D002930 ORTHO05D003283 4.8e-24 116.3 92 54.3
Manes.09G162700 Manihot esculenta HOM05D002930 ORTHO05D003283 1.1e-23 115.2 92 53.3
Actinidia05730 Actinidia chinensis HOM05D002930 ORTHO05D003283 1.8e-23 114.4 92 54.3
Lj9C680G12 Lonicera japonica HOM05D002930 ORTHO05D003283 2.4e-23 114.0 105 50.5
arahy.Tifrunner.gnm1.ann1.MJP89X Arachis hypogaea HOM05D002930 ORTHO05D003283 3.1e-23 113.6 90 55.6
Duzib177G0642 Durio zibethinus HOM05D002930 ORTHO05D003283 3.1e-23 113.6 90 55.6
arahy.Tifrunner.gnm1.ann1.HQA39L Arachis hypogaea HOM05D002930 ORTHO05D003283 4.1e-23 113.2 90 55.6
Thecc.05G299700 Theobroma cacao HOM05D002930 ORTHO05D003283 4.1e-23 113.2 90 54.4
Sabra05G0038400 Salix brachista HOM05D002930 ORTHO05D003283 1.2e-22 111.7 92 53.3
Lalb_Chr04g0260861 Lupinus albus HOM05D002930 ORTHO05D003283 2.0e-22 110.9 90 58.9
Medtr7g113930 Medicago truncatula HOM05D002930 ORTHO05D003283 2.0e-22 110.9 97 51.5
DCAR_022250 Daucus carota HOM05D002930 ORTHO05D003283 2.6e-22 110.5 105 47.6
Cc02_g32570 Coffea canephora HOM05D002930 ORTHO05D003283 3.4e-22 110.2 82 56.1
Psat3g009520 Pisum sativum HOM05D002930 ORTHO05D003283 5.9e-22 109.4 97 51.5
COL.COLO4_13526 Corchorus olitorius HOM05D002930 ORTHO05D003283 1.7e-21 107.8 90 54.4
TPR.G33213 Trifolium pratense HOM05D002930 ORTHO05D003283 3.8e-21 106.7 97 51.5
CANSAT54G0439 Cannabis sativa HOM05D002930 ORTHO05D003283 8.5e-21 105.5 84 54.8
Lj1g0027310 Lotus japonicus HOM05D002930 ORTHO05D003283 8.5e-21 105.5 93 52.7
Glyma.19G238300 Glycine max HOM05D002930 ORTHO05D003283 1.1e-20 105.1 87 54.0
Phvul.006G095000 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 3.2e-20 103.6 88 56.8
HPP92_017201 Vanilla planifolia HOM05D002930 ORTHO05D003283 1.6e-19 101.3 221 32.6
VMungo0540G0500 Vigna mungo HOM05D002930 ORTHO05D003283 1.0e-18 98.6 88 53.4
ECA247G2962 Erigeron canadensis HOM05D002930 ORTHO05D003283 3.0e-18 97.1 62 69.4
Gohir.D13G110000 Gossypium hirsutum HOM05D002930 ORTHO05D003283 3.0e-18 97.1 90 45.6
Gorai.013G123400 Gossypium raimondii HOM05D002930 ORTHO05D003283 3.0e-18 97.1 90 45.6
Gohir.A13G106800 Gossypium hirsutum HOM05D002930 ORTHO05D003283 8.8e-18 95.5 90 44.4
Actinidia21091 Actinidia chinensis HOM05D001881 ORTHO05D001856 3.1e-15 87.0 74 66.2
Rhsim01G0277800 Rhododendron simsii HOM05D002930 ORTHO05D003283 2.6e-14 84.0 162 36.4
Pp3c9_13300 Physcomitrium patens HOM05D002930 ORTHO05D003283 1.7e-13 81.3 88 38.6
Mapoly0023s0171 Marchantia polymorpha HOM05D002930 ORTHO05D003283 2.9e-13 80.5 108 35.2
Pp3c3_17170 Physcomitrium patens HOM05D002930 ORTHO05D003283 4.2e-12 76.6 87 36.8
arahy.Tifrunner.gnm1.ann1.K2UAY4 Arachis hypogaea HOM05D002930 ORTHO05D003283 1.2e-11 75.1 54 63.0
QL03p004167 Quercus lobata HOM05D002930 ORTHO05D003283 1.0e-10 72.0 61 55.7
Ca_09378_v3 Cicer arietinum L. HOM05D002930 ORTHO05D003283 6.7e-10 69.3 68 51.5
Rhsim01G0277700 Rhododendron simsii HOM05D002930 ORTHO05D003283 1.1e-09 68.6 40 67.5
SHI15439 Sapria himalayana HOM05D002930 ORTHO05D003283 2.0e-09 67.8 64 48.4
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 3.7e-08 63.5 89 34.8
Rhsim01G0277100 Rhododendron simsii HOM05D067921 ORTHO05D050652 8.2e-08 62.4 173 35.3
AagrBONN_evm.TU.Sc2ySwM_228.583 Anthoceros agrestis HOM05D002930 ORTHO05D003283 2.0e-06 57.8 102 32.4


User provided reference genes

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