Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 2.6e-95 352.1 177 100.0
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 2.3e-88 328.9 178 94.4
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.3e-78 296.6 178 83.1
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.3e-78 296.6 178 83.1
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 8.9e-72 273.9 174 78.7
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 2.0e-71 272.7 176 77.8
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 2.6e-71 272.3 178 77.0
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 7.5e-63 244.2 154 80.5
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 2.1e-60 236.1 178 68.0
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 3.5e-60 235.3 178 68.5
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.6e-60 235.0 175 66.9
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 6.0e-60 234.6 184 67.4
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.0e-59 233.8 175 66.9
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 1.0e-59 233.8 178 67.4
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 1.7e-59 233.0 178 66.3
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 3.0e-59 232.3 175 69.1
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.6e-59 230.7 178 67.4
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 1.5e-58 229.9 171 67.3
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 2.5e-58 229.2 173 66.5
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 3.3e-58 228.8 171 67.3
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 5.6e-58 228.0 175 64.6
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.6e-57 226.5 173 67.1
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 2.1e-57 226.1 178 65.7
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 4.7e-57 224.9 173 66.5
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 1.1e-56 223.8 173 65.9
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 6.8e-56 221.1 168 67.9
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 2.6e-55 219.2 177 65.0
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 5.8e-55 218.0 168 67.3
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 2.2e-54 216.1 175 62.9
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 2.2e-54 216.1 175 62.9
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 3.7e-54 215.3 168 66.7
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.2e-52 210.3 178 62.9
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 2.7e-52 209.1 172 61.6
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 4.6e-52 208.4 168 64.9
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 4.6e-52 208.4 168 64.3
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 7.8e-52 207.6 169 64.5
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 7.8e-52 207.6 175 60.6
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 2.3e-51 206.1 172 60.5
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 5.1e-51 204.9 172 59.9
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 8.6e-51 204.1 168 63.1
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 4.3e-50 201.8 172 61.0
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.2e-49 200.3 201 55.2
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.6e-49 199.9 171 59.6
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.8e-49 199.1 157 65.6
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 1.1e-48 197.2 176 57.4
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 1.1e-48 197.2 154 66.9
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 1.1e-48 197.2 154 66.9
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 1.1e-48 197.2 178 56.7
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.4e-48 196.8 154 66.9
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 1.2e-47 193.7 191 56.0
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 9.9e-47 190.7 172 55.2
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.7e-46 189.9 167 56.3
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 2.2e-46 189.5 168 58.9
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 2.9e-46 189.1 171 53.8
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.1e-45 187.2 172 55.2
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.4e-45 186.8 172 55.8
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 2.4e-45 186.0 172 54.7
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 2.4e-45 186.0 178 56.2
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 3.2e-45 185.7 160 56.9
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 4.2e-45 185.3 174 56.9
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 5.4e-45 184.9 155 61.3
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 1.2e-44 183.7 163 56.4
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.2e-44 183.7 169 56.2
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 1.6e-44 183.3 174 52.9
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 1.6e-44 183.3 172 54.7
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 2.7e-44 182.6 176 52.8
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 2.7e-44 182.6 172 54.1
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 2.7e-44 182.6 176 52.8
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 2.7e-44 182.6 172 54.1
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 4.6e-44 181.8 166 56.0
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 6.0e-44 181.4 222 47.7
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 7.8e-44 181.0 129 68.2
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.0e-43 180.6 172 55.8
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 1.3e-43 180.3 175 53.1
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.7e-43 179.9 225 46.7
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 3.9e-43 178.7 176 54.5
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 5.1e-43 178.3 176 52.3
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 5.1e-43 178.3 173 55.5
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.1e-42 177.2 178 59.0
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.5e-42 176.8 230 46.1
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.9e-42 176.4 149 64.4
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 2.5e-42 176.0 178 53.4
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 3.3e-42 175.6 155 59.4
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 9.6e-42 174.1 156 58.3
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 2.1e-41 172.9 155 60.6
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 4.8e-41 171.8 174 51.7
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.1e-40 170.6 173 52.6
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 1.8e-40 169.9 128 64.1
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.1e-40 169.1 153 58.2
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 4.0e-40 168.7 197 47.2
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 5.3e-40 168.3 153 57.5
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 5.3e-40 168.3 174 52.9
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.5e-39 166.8 152 58.6
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 5.8e-39 164.9 178 51.7
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 1.3e-38 163.7 154 55.2
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.7e-38 163.3 161 53.4
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 2.2e-38 162.9 172 51.2
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 2.9e-38 162.5 166 53.6
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 2.9e-38 162.5 133 63.9
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 3.8e-38 162.2 158 55.7
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 1.1e-37 160.6 175 51.4
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 4.2e-37 158.7 174 48.3
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 4.2e-37 158.7 179 48.6
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 2.1e-36 156.4 179 48.0
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 2.7e-36 156.0 167 47.9
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 6.0e-36 154.8 152 52.6
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 6.0e-36 154.8 131 60.3
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 6.0e-36 154.8 174 48.9
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 6.0e-36 154.8 164 50.0
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.7e-35 153.3 151 53.6
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 5.1e-35 151.8 171 48.0
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 6.6e-35 151.4 137 58.4
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 6.6e-35 151.4 147 54.4
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 8.7e-35 151.0 164 47.6
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 1.5e-34 150.2 270 37.0
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 9.6e-34 147.5 172 47.1
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 1.3e-33 147.1 179 45.3
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 1.3e-33 147.1 179 45.3
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.6e-33 146.7 160 51.2
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 2.1e-33 146.4 174 46.0
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 1.1e-32 144.1 164 45.7
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 1.5e-31 140.2 172 44.2
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 3.4e-31 139.0 136 55.9
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 3.4e-31 139.0 137 55.5
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 3.4e-31 139.0 86 72.1
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.3e-30 137.1 154 51.9
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 4.9e-30 135.2 178 44.9
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 4.2e-29 132.1 175 43.4
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 3.5e-28 129.0 165 46.1
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 7.9e-28 127.9 84 65.5
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.0e-27 127.5 178 48.3
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 1.3e-27 127.1 141 49.6
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 5.1e-27 125.2 160 45.6
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 1.5e-26 123.6 91 62.6
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.6e-25 120.2 114 59.6
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 4.8e-25 118.6 143 54.5
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 4.3e-18 95.5 83 63.9
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 2.4e-16 89.7 168 33.9
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.1e-16 89.0 84 61.9
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.6e-15 86.3 81 60.5
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 4.5e-15 85.5 84 59.5
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 4.5e-15 85.5 88 61.4
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 7.6e-15 84.7 91 52.7
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.2e-14 83.2 81 58.0
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 2.2e-14 83.2 164 34.8
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 5.0e-14 82.0 112 49.1
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 2.5e-13 79.7 137 38.7
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 3.7e-09 65.9 61 60.7
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.1e-08 62.4 51 70.6
Cre09.g387504 Chlamydomonas reinhardtii HOM05D004607 ORTHO05D005836 5.3e-08 62.0 132 28.8
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 1.5e-07 60.5 158 28.5
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 1.7e-06 57.0 69 52.2
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 2.9e-06 56.2 96 42.7


User provided reference genes

Program Settings