Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 8.8e-102 373.6 189 100.0
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.1e-71 272.7 154 90.3
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.8e-47 192.6 179 65.4
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 2.4e-46 189.5 175 59.4
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.6e-45 186.0 181 59.1
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 7.6e-45 184.5 159 68.6
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 9.9e-45 184.1 184 58.7
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.9e-44 182.6 180 58.3
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 3.2e-43 179.1 179 58.7
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.2e-42 177.2 175 58.9
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.5e-42 175.6 169 63.3
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 6.0e-42 174.9 187 56.1
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.9e-41 172.2 185 56.2
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 8.7e-41 171.0 168 61.9
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 1.5e-40 170.2 164 59.8
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 3.3e-40 169.1 174 57.5
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 4.3e-40 168.7 144 64.6
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 5.6e-40 168.3 187 54.0
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 7.3e-40 167.9 165 57.6
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.2e-39 167.2 183 55.2
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 3.6e-39 165.6 183 55.7
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 4.7e-39 165.2 189 54.0
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 4.7e-39 165.2 187 54.0
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 2.4e-38 162.9 179 53.6
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.4e-38 162.9 187 52.9
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 3.1e-38 162.5 183 55.2
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 3.1e-38 162.5 185 53.0
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 6.9e-38 161.4 180 55.6
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.5e-37 160.2 187 53.5
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.6e-37 159.5 185 53.0
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 5.8e-37 158.3 162 56.8
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 7.6e-37 157.9 180 52.8
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 7.6e-37 157.9 186 53.2
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.3e-36 157.1 192 51.0
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.7e-36 156.8 180 52.2
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.7e-36 156.8 164 57.9
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 2.2e-36 156.4 179 53.6
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 8.4e-36 154.5 189 50.3
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-35 154.1 164 54.9
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.4e-35 153.7 190 50.5
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.9e-35 153.3 133 59.4
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.4e-35 152.9 192 51.0
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.4e-35 152.9 192 51.0
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 3.2e-35 152.5 191 49.7
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 4.2e-35 152.1 187 50.8
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.2e-35 152.1 192 51.6
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.4e-35 151.8 196 51.5
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 7.1e-35 151.4 172 52.3
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 7.1e-35 151.4 163 55.2
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.2e-34 150.6 181 48.6
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.1e-34 149.8 184 50.5
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.7e-34 149.4 182 50.5
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.5e-34 149.1 196 50.5
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 4.6e-34 148.7 189 49.7
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 7.8e-34 147.9 187 51.9
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.8e-34 147.9 196 50.5
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.8e-34 147.9 187 51.9
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.8e-34 147.9 187 51.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.3e-33 146.4 186 51.6
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 3.0e-33 146.0 174 54.0
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.0e-33 146.0 190 48.9
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 3.0e-33 146.0 172 52.9
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 3.0e-33 146.0 197 48.2
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 3.0e-33 146.0 197 51.3
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.1e-32 144.1 160 53.1
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.5e-32 143.7 180 51.7
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.3e-32 142.1 197 44.2
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 4.3e-32 142.1 185 50.8
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 7.3e-32 141.4 171 53.8
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 9.6e-32 141.0 166 51.8
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.3e-31 140.6 163 53.4
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.3e-31 140.6 187 48.7
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 2.1e-31 139.8 180 51.7
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.1e-31 139.8 167 51.5
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.1e-31 139.8 158 57.0
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.1e-31 139.8 158 57.0
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.8e-31 139.4 193 44.6
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.8e-31 139.4 181 49.2
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.1e-30 137.5 171 52.0
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.1e-30 137.5 175 50.9
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.4e-30 137.1 181 48.6
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.8e-30 136.7 194 47.4
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 3.1e-30 136.0 165 48.5
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.3e-30 135.2 181 48.1
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.5e-29 133.7 178 46.6
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 2.0e-29 133.3 205 43.9
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.6e-29 132.9 199 45.2
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 3.4e-29 132.5 195 45.6
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 5.8e-29 131.7 180 45.6
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 5.8e-29 131.7 181 47.5
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 5.8e-29 131.7 158 55.1
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 7.6e-29 131.3 181 49.7
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 9.9e-29 131.0 181 46.4
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.3e-28 130.6 186 45.2
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.3e-28 130.6 111 61.3
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.3e-28 130.6 196 43.9
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.7e-28 130.2 186 47.3
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 4.9e-28 128.6 180 45.6
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 4.9e-28 128.6 178 47.2
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.4e-27 127.1 174 50.0
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 1.4e-27 127.1 183 44.8
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.9e-27 126.7 148 50.0
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.9e-27 126.7 115 58.3
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.2e-27 125.6 175 46.9
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 4.2e-27 125.6 191 45.5
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 5.4e-27 125.2 108 62.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 9.3e-27 124.4 162 47.5
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 9.3e-27 124.4 181 49.2
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.3e-27 124.4 173 46.8
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.2e-26 124.0 175 45.7
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.6e-26 123.6 163 46.0
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 2.1e-26 123.2 153 48.4
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.5e-26 122.5 152 48.7
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.5e-26 122.5 176 44.9
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 3.5e-26 122.5 162 46.3
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 3.5e-26 122.5 175 44.6
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 3.5e-26 122.5 175 45.7
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 4.6e-26 122.1 161 47.8
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 4.6e-26 122.1 174 44.3
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 4.6e-26 122.1 175 45.1
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 7.9e-26 121.3 161 47.8
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 7.9e-26 121.3 165 47.3
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.0e-25 120.9 181 47.5
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.3e-25 120.6 192 45.8
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.8e-25 120.2 156 46.2
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.8e-25 120.2 164 45.7
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 3.9e-25 119.0 173 48.0
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 5.1e-25 118.6 180 45.0
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 6.7e-25 118.2 166 45.2
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.1e-24 117.5 188 42.0
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.9e-24 116.7 170 44.1
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.9e-24 116.7 179 45.3
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.3e-24 115.5 186 41.9
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 4.3e-24 115.5 173 44.5
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.3e-24 115.5 211 40.8
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 7.4e-24 114.8 174 42.0
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.4e-24 114.8 195 41.0
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 9.6e-24 114.4 205 40.0
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-23 113.6 163 44.2
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 3.7e-23 112.5 152 47.4
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 6.2e-23 111.7 182 41.8
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 6.2e-23 111.7 153 47.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 6.2e-23 111.7 166 45.2
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 6.2e-23 111.7 159 46.5
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.1e-22 110.9 222 41.4
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.4e-22 110.5 100 57.0
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.8e-22 110.2 171 45.6
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 4.0e-22 109.0 146 45.9
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 5.3e-22 108.6 160 43.1
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 6.9e-22 108.2 191 42.4
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-21 107.5 204 39.7
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-21 107.5 185 42.7
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 1.2e-21 107.5 185 42.2
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.5e-21 107.1 193 38.3
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.6e-21 106.3 135 47.4
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 7.6e-21 104.8 188 37.2
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.3e-20 104.0 113 54.9
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 3.8e-20 102.4 136 45.6
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 6.4e-20 101.7 194 38.7
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 6.4e-20 101.7 194 38.7
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 8.4e-20 101.3 195 38.5
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.4e-19 100.5 178 43.8
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.2e-19 99.4 260 33.5
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 5.5e-19 98.6 187 40.1
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.2e-18 97.4 163 46.0
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 2.3e-17 93.2 177 42.9
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-16 90.9 175 42.3
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-16 90.9 168 41.7
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-16 89.7 175 41.7
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 9.6e-16 87.8 169 42.0
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.7e-15 85.9 184 37.0
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 8.2e-15 84.7 169 41.4
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.1e-14 84.3 118 41.5
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.1e-14 82.8 155 36.8
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 5.3e-14 82.0 182 39.6
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.9e-14 81.6 175 40.6
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 9.0e-14 81.3 176 37.5
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 9.0e-14 81.3 85 54.1
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.3e-12 77.4 155 34.8
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 9.3e-11 71.2 149 35.6
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 1.8e-09 67.0 163 34.4
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 6.7e-09 65.1 60 55.0
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.1e-08 64.3 197 32.0
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.5e-08 63.2 107 43.9
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.8e-07 59.7 85 47.1


User provided reference genes

Program Settings