Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia20194 Actinidia chinensis HOM05D008545 ORTHO05D010341 9.8e-105 383.6 217 100.0
Dinv43892 Davidia involucrata HOM05D008545 ORTHO05D010341 4.9e-40 168.7 202 49.0
Actinidia10102 Actinidia chinensis HOM05D008545 ORTHO05D010341 1.9e-31 140.2 103 73.8
Duzib138G0500 Durio zibethinus HOM05D008545 ORTHO05D010341 1.9e-31 140.2 235 40.4
Potri.014G094600 Populus trichocarpa HOM05D008545 ORTHO05D010341 3.2e-31 139.4 240 40.4
GSVIVG01027047001 Vitis vinifera HOM05D008545 ORTHO05D010341 1.2e-30 137.5 228 36.8
CSS0024380 Camellia sinensis var. sinensis HOM05D008545 ORTHO05D010341 3.5e-30 136.0 249 40.6
Potri.002G167500 Populus trichocarpa HOM05D008545 ORTHO05D010341 6.0e-30 135.2 244 39.8
Thecc.01G347700 Theobroma cacao HOM05D008545 ORTHO05D010341 1.1e-28 131.0 243 39.5
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 2.5e-28 129.8 240 37.1
Gohir.A07G139700 Gossypium hirsutum HOM05D008545 ORTHO05D010341 5.7e-28 128.6 240 37.9
Gohir.D07G144800 Gossypium hirsutum HOM05D008545 ORTHO05D010341 7.4e-28 128.3 240 37.9
Gorai.001G156800 Gossypium raimondii HOM05D008545 ORTHO05D010341 7.4e-28 128.3 240 37.9
Lj7A504G55 Lonicera japonica HOM05D008545 ORTHO05D010341 1.4e-26 124.0 164 47.6
Sabra14G0069200 Salix brachista HOM05D008545 ORTHO05D010341 3.1e-26 122.9 133 50.4
Atru.chr5.619 Acer truncatum HOM05D008545 ORTHO05D010341 6.9e-26 121.7 232 39.2
Eucgr.D02345 Eucalyptus grandis HOM05D008545 ORTHO05D010341 4.5e-25 119.0 238 36.1
Manes.01G249300 Manihot esculenta HOM05D008545 ORTHO05D010341 2.2e-24 116.7 238 40.8
Lj9A592T71 Lonicera japonica HOM05D008545 ORTHO05D010341 8.5e-24 114.8 249 34.9
MD07G1144400 Malus domestica HOM05D008545 ORTHO05D010341 7.9e-22 108.2 203 37.9
Nitab4.5_0002262g0100 Nicotiana tabacum HOM05D008545 ORTHO05D010341 1.0e-21 107.8 163 41.1
CAN.G310.5 Capsicum annuum HOM05D008545 ORTHO05D010341 5.1e-21 105.5 169 42.6
PGSC0003DMG400033878 Solanum tuberosum HOM05D008545 ORTHO05D010341 1.5e-20 104.0 143 44.1
PGR031G2054 Punica granatum HOM05D008545 ORTHO05D010341 5.7e-20 102.1 243 35.0
Peaxi162Scf00403g00718 Petunia axillaris HOM05D008545 ORTHO05D010341 1.1e-18 97.8 168 40.5
Hma1.2p1_0384F.1_g141050 Hydrangea macrophylla HOM05D008545 ORTHO05D010341 3.1e-18 96.3 93 58.1
CANSAT56G3993 Cannabis sativa HOM05D008545 ORTHO05D010341 2.0e-17 93.6 158 42.4
Prupe.2G183300 Prunus persica HOM05D008545 ORTHO05D010341 2.6e-17 93.2 201 35.3
DCAR_016077 Daucus carota HOM05D009167 ORTHO05D010341 4.5e-17 92.4 239 31.8
Solyc05g050240.3 Solanum lycopersicum HOM05D008545 ORTHO05D010341 7.7e-17 91.7 162 37.7
Sopen05g028690 Solanum pennellii HOM05D008545 ORTHO05D010341 7.7e-17 91.7 118 43.2
RcHm_v2.0_Chr1g0358691 Rosa chinensis HOM05D008545 ORTHO05D010341 8.5e-16 88.2 207 32.4
MSTRG.17319 Avicennia marina HOM05D008545 ORTHO05D010341 3.2e-15 86.3 160 38.8
FvH4_7g15870 Fragaria vesca HOM05D008545 ORTHO05D010341 2.7e-14 83.2 209 33.0
FAN06G5050 Fragaria x ananassa HOM05D008545 ORTHO05D010341 3.6e-14 82.8 209 32.5
MD01G1075500 Malus domestica HOM05D008545 ORTHO05D010341 3.9e-13 79.3 85 51.8
FAN10G0919 Fragaria x ananassa HOM05D008545 ORTHO05D010341 5.1e-13 79.0 209 32.1
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 6.7e-13 78.6 116 39.7
FAN10G3148 Fragaria x ananassa HOM05D008545 ORTHO05D010341 1.5e-12 77.4 209 31.6
FAN01G1302 Fragaria x ananassa HOM05D008545 ORTHO05D010341 9.7e-12 74.7 209 31.1
Nn1g01793 Nelumbo nucifera HOM05D008545 ORTHO05D010341 9.7e-12 74.7 164 26.8
FAN03G1297 Fragaria x ananassa HOM05D008545 ORTHO05D010341 1.3e-11 74.3 195 31.8
SGA_v2.0_scaffold5G02985 Striga asiatica HOM05D008545 ORTHO05D010341 2.2e-11 73.6 159 39.0
SGA_v2.0_scaffold548G52844 Striga asiatica HOM05D046447 ORTHO05D010341 8.5e-08 61.6 95 42.1
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 1.4e-07 60.8 102 36.3
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 2.5e-07 60.1 79 36.7
Nitab4.5_0003779g0040 Nicotiana tabacum HOM05D008545 ORTHO05D010341 5.5e-07 58.9 124 33.1
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 7.2e-07 58.5 71 40.8
COL.COLO4_06334 Corchorus olitorius HOM05D002314 ORTHO05D002538 7.2e-07 58.5 70 50.0
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 7.2e-07 58.5 72 41.7
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 1.2e-06 57.8 113 31.9
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 1.2e-06 57.8 113 31.9
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 1.6e-06 57.4 71 39.4
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 2.1e-06 57.0 71 40.8
FAN06G3211 Fragaria x ananassa HOM05D008545 ORTHO05D010341 2.1e-06 57.0 172 29.7
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 2.1e-06 57.0 71 40.8
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 2.7e-06 56.6 90 35.6
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 2.7e-06 56.6 102 33.3
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 2.7e-06 56.6 79 34.2
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 2.7e-06 56.6 71 39.4
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 2.7e-06 56.6 80 37.5
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 2.7e-06 56.6 71 39.4
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 3.6e-06 56.2 84 38.1
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 3.6e-06 56.2 71 39.4
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 3.6e-06 56.2 81 37.0
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 3.6e-06 56.2 81 37.0
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 4.7e-06 55.8 71 39.4
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 4.7e-06 55.8 71 38.0
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 4.7e-06 55.8 86 36.0
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 4.7e-06 55.8 71 38.0
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 4.7e-06 55.8 77 36.4
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 4.7e-06 55.8 82 35.4
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 4.7e-06 55.8 116 33.6
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 4.7e-06 55.8 71 40.8
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 6.1e-06 55.5 69 37.7
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 6.1e-06 55.5 69 37.7
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 6.1e-06 55.5 137 28.5
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 6.1e-06 55.5 78 38.5
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 6.1e-06 55.5 71 38.0
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 6.1e-06 55.5 72 41.7
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 7.9e-06 55.1 115 33.0
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 7.9e-06 55.1 116 34.5
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 7.9e-06 55.1 71 38.0
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 7.9e-06 55.1 84 38.1
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 7.9e-06 55.1 104 33.7
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 7.9e-06 55.1 70 38.6
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 7.9e-06 55.1 71 38.0
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 7.9e-06 55.1 71 36.6
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 7.9e-06 55.1 71 38.0


User provided reference genes

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