Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.1e-260 902.9 490 100.0
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.9e-220 769.2 491 87.6
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.1e-169 600.5 503 75.0
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.0e-162 577.4 504 71.6
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 2.6e-153 546.2 537 64.2
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 2.5e-148 529.6 501 66.5
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 5.7e-145 518.5 498 66.3
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 1.1e-140 504.2 503 65.4
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 4.7e-139 498.8 489 63.4
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 1.4e-138 497.3 496 64.1
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 5.4e-135 485.3 487 63.2
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 1.3e-133 480.7 439 66.7
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 1.6e-131 473.8 495 60.2
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 1.8e-130 470.3 428 67.1
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 3.1e-130 469.5 430 65.1
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.2e-129 467.6 438 66.0
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 2.0e-129 466.8 503 62.0
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 2.0e-129 466.8 496 62.9
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.0e-129 466.8 382 73.0
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 5.8e-129 465.3 486 60.5
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 1.3e-128 464.2 499 59.7
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 1.7e-128 463.8 481 63.6
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 1.9e-127 460.3 491 62.3
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 9.2e-127 458.0 441 63.3
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 2.7e-126 456.4 469 61.8
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 4.6e-126 455.7 505 57.8
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 6.0e-126 455.3 496 62.1
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 7.8e-126 454.9 494 60.3
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 3.9e-125 452.6 435 63.4
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 3.9e-125 452.6 459 63.2
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 8.6e-125 451.4 509 58.9
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 1.1e-124 451.1 427 65.3
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 1.5e-124 450.7 488 59.0
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 1.9e-124 450.3 511 59.7
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 4.3e-124 449.1 488 61.7
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 5.6e-124 448.7 428 65.9
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 3.6e-123 446.0 459 63.0
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 8.1e-123 444.9 435 65.1
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 8.1e-123 444.9 427 64.4
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 6.8e-122 441.8 457 60.2
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 1.2e-121 441.0 431 63.1
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 1.5e-121 440.7 435 64.1
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 5.8e-121 438.7 456 64.9
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 5.8e-121 438.7 471 59.7
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 9.8e-121 438.0 429 62.9
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 1.9e-119 433.7 467 60.2
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 3.2e-119 433.0 508 57.1
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 9.2e-119 431.4 513 56.1
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 1.2e-118 431.0 464 58.0
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 2.7e-118 429.9 464 58.2
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 4.6e-118 429.1 466 61.6
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 9.5e-116 421.4 436 60.6
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 1.8e-114 417.2 447 60.6
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 1.2e-113 414.5 415 65.1
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 2.6e-113 413.3 455 61.1
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 1.3e-112 411.0 489 56.6
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 2.2e-112 410.2 394 63.7
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 2.2e-112 410.2 428 63.8
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 2.9e-112 409.8 430 62.6
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 6.4e-112 408.7 457 59.3
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 1.9e-111 407.1 430 62.3
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 7.1e-111 405.2 485 56.1
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 7.1e-111 405.2 432 60.6
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.6e-110 404.1 435 60.7
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 2.7e-110 403.3 665 44.5
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 4.6e-110 402.5 431 59.9
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 6.6e-109 398.7 445 59.1
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 1.5e-108 397.5 428 59.3
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 1.9e-108 397.1 420 61.9
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 3.3e-108 396.4 428 59.3
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 1.2e-107 394.4 439 59.7
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 1.6e-107 394.0 433 59.6
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 2.8e-107 393.3 432 60.0
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 6.2e-107 392.1 467 56.1
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 8.1e-107 391.7 430 59.3
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 1.4e-106 391.0 431 60.3
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 5.2e-106 389.0 432 58.1
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 2.6e-105 386.7 494 55.3
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 1.3e-104 384.4 463 52.5
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 3.8e-104 382.9 431 58.0
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 7.8e-102 375.2 487 54.6
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 7.8e-102 375.2 432 58.3
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 7.8e-102 375.2 487 54.6
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 2.3e-101 373.6 488 56.1
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 3.0e-101 373.2 431 58.7
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 1.1e-98 364.8 496 54.0
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 1.3e-93 347.8 440 51.6
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 1.2e-89 334.7 427 54.1
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 7.6e-89 332.0 293 68.6
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 6.4e-88 328.9 462 50.9
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 6.4e-88 328.9 462 50.9
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 8.4e-88 328.6 376 55.6
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.4e-87 327.8 388 53.6
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.2e-86 324.7 294 65.6
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 2.1e-86 323.9 435 50.3
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 2.5e-84 317.0 294 65.3
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 1.3e-83 314.7 490 46.5
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 6.2e-83 312.4 295 67.5
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 5.8e-81 305.8 391 54.2
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 3.8e-80 303.1 297 65.0
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 5.5e-79 299.3 633 41.7
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 4.6e-78 296.2 286 67.1
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 7.9e-78 295.4 329 57.1
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 6.3e-75 285.8 434 50.9
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 2.4e-74 283.9 286 64.3
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 1.3e-72 278.1 436 48.9
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 3.0e-69 266.9 357 46.8
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 1.0e-61 241.9 390 48.2
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 2.3e-61 240.7 274 63.1
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 3.9e-61 240.0 189 72.0
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.3e-56 224.9 392 43.9
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 1.7e-56 224.6 338 47.0
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 3.6e-54 216.9 434 45.2
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 3.8e-48 196.8 373 45.8
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 2.6e-44 184.1 589 32.6
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 1.2e-38 165.2 102 84.3
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 7.0e-34 149.4 119 77.3
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 1.9e-31 141.4 380 31.6
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 9.5e-31 139.0 198 50.0
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 1.2e-30 138.7 87 85.1
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 4.7e-30 136.7 179 58.7
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 6.1e-30 136.3 156 54.5
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 2.7e-25 120.9 332 39.8
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 1.8e-21 108.2 99 65.7
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 4.0e-21 107.1 88 65.9
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 4.0e-21 107.1 54 90.7
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 4.9e-19 100.1 96 61.5
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 5.4e-18 96.7 93 69.9
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 2.3e-16 91.3 83 59.0
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.9e-16 90.5 96 62.5
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 6.6e-16 89.7 64 81.2
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.2e-11 74.7 88 56.8
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 5.4e-10 70.1 149 39.6
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 6.6e-08 63.2 139 30.9
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 1.5e-07 62.0 43 69.8
SEGI_02848 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 2.5e-07 61.2 39 82.1
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 2.1e-06 58.2 104 41.3


User provided reference genes

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