Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.0e-140 503.4 268 100.0
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 9.9e-91 337.4 266 70.3
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 2.9e-82 309.3 270 64.4
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.3e-74 283.9 262 62.6
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 3.9e-71 272.3 288 59.0
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.5e-67 260.4 263 59.3
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 5.5e-65 251.9 269 54.6
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 2.7e-64 249.6 267 55.4
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.1e-62 244.2 248 59.7
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 4.8e-61 238.8 229 59.4
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 6.9e-60 235.0 267 54.3
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 9.0e-60 234.6 279 52.0
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 9.0e-60 234.6 260 54.2
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.2e-59 234.2 270 54.8
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.3e-58 230.7 260 53.5
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 8.5e-58 228.0 278 52.5
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.4e-57 227.3 256 58.2
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 3.2e-57 226.1 248 56.0
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 5.5e-57 225.3 262 52.3
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 7.2e-57 224.9 280 50.4
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 9.4e-57 224.6 272 52.6
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 2.7e-56 223.0 258 52.3
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 4.6e-56 222.2 279 51.6
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 6.1e-56 221.9 279 51.6
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.1e-54 217.6 263 50.6
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 4.3e-54 215.7 288 50.0
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 4.3e-54 215.7 212 58.5
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 4.3e-54 215.7 282 50.0
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 4.3e-54 215.7 282 50.0
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 1.3e-53 214.2 247 52.2
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.7e-53 213.8 226 54.9
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 2.2e-53 213.4 248 51.6
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.2e-53 213.4 237 58.6
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.2e-53 213.4 256 52.7
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.2e-53 213.4 210 59.5
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 8.2e-53 211.5 242 54.1
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 1.1e-52 211.1 200 60.5
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.4e-52 210.7 267 51.7
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 1.8e-52 210.3 284 50.7
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.4e-52 209.9 272 51.1
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 3.1e-52 209.5 245 54.3
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.6e-51 206.5 209 60.3
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 3.4e-51 206.1 201 62.7
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 4.5e-51 205.7 254 52.0
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.0e-50 204.5 197 60.9
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 2.2e-50 203.4 251 52.2
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 5.0e-50 202.2 275 47.3
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 8.5e-50 201.4 239 50.6
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 2.5e-49 199.9 244 50.0
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.5e-49 199.9 264 50.8
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 3.2e-49 199.5 266 50.4
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 5.5e-49 198.7 253 51.4
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 7.2e-49 198.4 246 50.4
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 7.2e-49 198.4 272 46.7
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 9.4e-49 198.0 264 50.0
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 9.4e-49 198.0 266 52.6
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.2e-48 197.6 266 51.5
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 2.7e-48 196.4 254 49.6
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 2.7e-48 196.4 228 55.3
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 2.7e-48 196.4 251 52.2
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.6e-48 196.1 266 51.1
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 4.7e-48 195.7 250 48.8
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 6.1e-48 195.3 254 48.8
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 7.9e-48 194.9 327 44.0
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.0e-47 194.5 222 52.7
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.0e-47 194.5 277 46.6
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.8e-47 193.7 277 46.6
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 2.3e-47 193.4 200 59.0
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.1e-46 191.0 228 54.4
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.1e-46 191.0 220 51.8
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.5e-46 190.7 258 46.9
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 4.4e-46 189.1 271 49.4
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 4.4e-46 189.1 187 61.5
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 9.7e-46 188.0 244 50.4
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.3e-45 187.6 200 57.5
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 1.3e-45 187.6 224 52.7
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 1.8e-44 183.7 260 46.2
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.8e-44 183.7 265 45.7
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 3.1e-44 183.0 256 48.4
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 5.3e-44 182.2 230 48.3
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 3.5e-43 179.5 141 69.5
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.5e-43 179.5 258 47.3
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 3.5e-43 179.5 156 63.5
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 4.5e-43 179.1 239 47.7
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 7.7e-43 178.3 150 64.7
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 2.2e-42 176.8 197 53.3
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 2.2e-42 176.8 271 46.9
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 2.9e-42 176.4 196 53.1
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 2.9e-42 176.4 196 53.1
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 2.9e-42 176.4 201 53.7
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 8.5e-42 174.9 191 54.5
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 1.1e-41 174.5 185 55.7
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 2.5e-41 173.3 208 52.9
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 2.5e-41 173.3 191 55.5
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 3.2e-41 172.9 198 52.5
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 5.5e-41 172.2 222 51.8
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 5.5e-41 172.2 256 44.9
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 7.2e-41 171.8 335 39.1
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.6e-40 170.6 135 68.9
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 2.1e-40 170.2 239 45.6
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 2.1e-40 170.2 239 45.6
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 6.1e-40 168.7 201 50.2
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 8.0e-40 168.3 212 53.3
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 8.0e-40 168.3 201 50.2
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 2.3e-39 166.8 187 53.5
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 3.0e-39 166.4 211 49.8
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 3.9e-39 166.0 193 53.4
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.5e-38 164.1 259 45.2
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 4.4e-38 162.5 266 42.9
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 5.7e-38 162.2 200 53.0
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 9.7e-38 161.4 207 52.7
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 1.3e-37 161.0 201 50.7
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.3e-37 161.0 193 51.8
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.2e-37 160.2 265 43.0
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 2.4e-36 156.8 117 71.8
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 1.2e-35 154.5 157 59.9
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 1.2e-35 154.5 136 66.2
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 5.9e-35 152.1 217 45.6
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 7.7e-35 151.8 122 68.9
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 1.9e-33 147.1 186 50.0
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 5.5e-33 145.6 106 71.7
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 1.8e-31 140.6 108 68.5
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 2.3e-31 140.2 128 60.2
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 4.0e-31 139.4 213 44.1
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 4.0e-31 139.4 185 47.6
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.7e-29 134.0 209 45.9
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 2.2e-29 133.7 112 67.0
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 4.8e-29 132.5 221 43.0
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 2.4e-28 130.2 138 57.2
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 1.2e-27 127.9 176 49.4
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.8e-23 114.0 96 66.7
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 2.3e-23 113.6 86 69.8
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 4.0e-23 112.8 98 62.2
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.5e-22 110.9 150 51.3
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.2e-19 101.3 183 40.4
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 1.6e-19 100.9 143 46.2
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.5e-17 93.6 79 65.8
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.2e-17 92.8 60 81.7
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 2.1e-16 90.5 171 35.1
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 6.1e-16 89.0 104 47.1
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 1.8e-15 87.4 62 77.4
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 1.8e-15 87.4 130 43.8
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 5.2e-15 85.9 112 48.2
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.9e-13 79.3 94 55.3
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.7e-11 73.6 45 84.4
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.9e-10 70.1 218 34.4
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.6e-10 68.9 115 48.7
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 6.6e-10 68.9 49 79.6
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 3.6e-08 63.2 145 33.8


User provided reference genes

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