Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 4.3e-256 887.5 451 100.0
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 2.1e-194 682.6 429 79.3
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 2.5e-171 605.9 431 69.8
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 3.4e-160 568.9 467 62.3
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 4.9e-159 565.1 429 63.9
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 3.3e-155 552.4 434 63.8
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.8e-153 546.6 424 62.5
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 1.8e-153 546.6 434 61.5
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 1.2e-152 543.9 429 63.2
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 2.6e-152 542.7 438 61.0
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.7e-149 532.7 422 61.6
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 2.3e-148 529.6 426 61.7
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 4.3e-147 525.4 426 59.6
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 4.3e-147 525.4 426 59.4
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 4.3e-147 525.4 438 58.7
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 7.4e-147 524.6 384 66.9
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 2.1e-146 523.1 427 59.7
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 4.8e-146 521.9 381 65.6
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 6.2e-146 521.5 426 59.2
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.4e-145 520.4 426 59.2
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 1.8e-145 520.0 425 59.3
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 2.4e-145 519.6 438 59.4
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 9.0e-145 517.7 441 58.5
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 1.2e-144 517.3 429 60.1
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 1.2e-144 517.3 428 60.3
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 2.6e-144 516.2 412 60.0
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 4.5e-144 515.4 436 58.9
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 1.3e-143 513.8 430 60.0
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 3.5e-141 505.8 453 61.1
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 2.3e-140 503.1 432 58.8
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 5.1e-140 501.9 428 57.7
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 6.7e-140 501.5 472 54.9
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 1.9e-139 500.0 431 57.8
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 2.5e-139 499.6 431 59.2
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 3.3e-139 499.2 434 58.3
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 7.4e-139 498.0 431 57.1
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 9.6e-139 497.7 433 58.4
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 1.3e-138 497.3 430 58.6
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 2.8e-138 496.1 431 57.3
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 2.8e-138 496.1 439 57.2
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 4.8e-138 495.4 432 57.4
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 1.4e-137 493.8 428 57.2
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 2.4e-137 493.0 431 57.8
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 2.4e-137 493.0 431 57.5
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 6.9e-137 491.5 381 63.3
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 1.2e-136 490.7 431 57.1
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 1.2e-136 490.7 435 57.9
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 3.4e-136 489.2 417 59.2
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 4.5e-136 488.8 421 57.7
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 7.6e-136 488.0 428 56.5
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 1.3e-135 487.3 431 56.4
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 1.3e-135 487.3 435 58.4
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 2.2e-135 486.5 427 56.7
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 2.2e-135 486.5 426 56.6
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 1.1e-134 484.2 437 58.1
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.4e-134 483.8 384 60.2
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 1.4e-134 483.8 379 62.0
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 3.2e-134 482.6 431 55.9
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 7.1e-134 481.5 428 54.7
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.2e-133 480.7 436 56.0
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 2.7e-133 479.6 428 54.4
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 6.0e-133 478.4 433 56.6
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.0e-132 477.6 428 54.4
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 1.8e-132 476.9 433 56.4
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 3.0e-132 476.1 433 56.4
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 5.1e-132 475.3 433 56.1
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 3.3e-131 472.6 433 56.1
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 3.3e-131 472.6 433 56.1
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 3.3e-131 472.6 451 53.9
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 3.3e-131 472.6 433 56.6
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 7.4e-131 471.5 381 61.9
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.3e-130 470.7 423 57.0
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 1.2e-128 464.2 377 58.9
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 9.4e-126 454.5 379 60.9
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 9.4e-126 454.5 375 59.7
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 1.2e-125 454.1 419 55.6
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 2.3e-124 449.9 432 54.6
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 2.0e-123 446.8 377 57.8
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 1.7e-122 443.7 377 57.6
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.1e-121 441.0 420 51.4
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.6e-120 436.4 378 56.6
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 6.5e-119 431.8 381 56.7
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 4.2e-118 429.1 492 48.0
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 5.5e-118 428.7 435 52.2
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 5.5e-118 428.7 432 51.2
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 3.6e-117 426.0 437 51.7
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 1.0e-116 424.5 437 51.7
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 6.3e-114 415.2 379 54.9
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 1.1e-113 414.5 500 45.0
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 1.4e-110 404.1 398 53.8
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 8.0e-109 398.3 351 55.6
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 1.5e-107 394.0 420 52.1
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 2.8e-106 389.8 444 48.2
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 1.4e-105 387.5 445 46.7
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 3.1e-105 386.3 434 47.5
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 1.6e-104 384.0 438 47.7
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 4.5e-104 382.5 428 49.8
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 3.2e-102 376.3 430 47.7
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 1.6e-101 374.0 449 46.1
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 1.5e-99 367.5 436 47.5
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 3.3e-99 366.3 383 50.9
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 3.1e-97 359.8 426 46.9
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 5.3e-97 359.0 426 46.7
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 4.2e-94 349.4 311 54.7
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.2e-94 349.4 426 43.4
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 3.0e-92 343.2 435 45.7
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 1.2e-91 341.3 431 44.5
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 2.6e-91 340.1 435 45.5
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 7.5e-91 338.6 434 43.3
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 6.3e-90 335.5 291 57.7
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.6e-88 330.9 441 42.0
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 2.0e-88 330.5 424 44.8
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 7.7e-88 328.6 424 45.8
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 1.0e-87 328.2 344 54.1
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 1.0e-87 328.2 430 42.3
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 2.3e-84 317.0 399 44.6
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 4.0e-84 316.2 447 42.3
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 4.7e-77 292.7 420 39.8
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 2.7e-72 276.9 267 53.2
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 4.6e-72 276.2 445 39.6
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 1.3e-71 274.6 348 44.8
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 6.8e-68 262.3 386 39.1
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 1.1e-57 228.4 394 33.8
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 2.4e-57 227.3 273 45.4
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 1.4e-33 148.3 132 53.0
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 6.0e-24 116.3 148 46.6
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.8e-15 88.2 78 56.4
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 2.8e-13 80.9 51 78.4
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 6.3e-13 79.7 55 72.7
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 1.8e-12 78.2 52 76.9
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 1.5e-11 75.1 67 58.2
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 7.2e-09 66.2 53 64.2
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 2.1e-08 64.7 52 69.2
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 4.3e-06 57.0 43 62.8


User provided reference genes

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