Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.9e-282 974.5 487 100.0
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.6e-192 675.2 545 69.4
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 2.8e-176 622.5 548 63.3
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 4.8e-176 621.7 548 63.3
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 4.1e-151 538.9 548 57.1
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 3.2e-148 529.3 567 55.9
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 1.6e-131 473.8 453 56.5
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 2.1e-131 473.4 544 52.0
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 3.8e-125 452.6 492 53.9
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 6.1e-123 445.3 539 49.0
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 8.0e-123 444.9 516 50.8
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 9.8e-121 438.0 522 49.2
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 2.3e-114 416.8 621 42.7
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 8.9e-114 414.8 496 47.6
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 8.9e-114 414.8 456 50.7
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 4.1e-111 406.0 514 46.1
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 7.0e-111 405.2 526 47.9
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 7.8e-110 401.7 473 47.8
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 1.0e-109 401.4 528 47.5
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 1.7e-109 400.6 542 44.5
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 3.0e-109 399.8 537 44.5
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.9e-109 399.4 528 47.3
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 1.9e-108 397.1 550 44.0
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 5.6e-108 395.6 516 45.9
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 7.3e-108 395.2 527 47.1
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 9.5e-108 394.8 452 50.9
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 1.6e-107 394.0 521 44.3
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 2.1e-107 393.7 528 45.3
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 2.8e-107 393.3 524 45.8
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 4.7e-107 392.5 552 44.2
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 4.7e-107 392.5 525 45.9
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 1.4e-106 391.0 454 49.1
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 4.0e-106 389.4 522 43.9
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 4.0e-106 389.4 527 46.9
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 1.5e-105 387.5 453 50.3
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 2.0e-105 387.1 517 44.9
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 3.4e-105 386.3 453 50.1
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 5.8e-105 385.6 547 43.5
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 9.8e-105 384.8 537 43.4
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.3e-104 384.4 528 44.1
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 2.9e-104 383.3 453 47.5
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 3.2e-103 379.8 547 45.3
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 3.2e-103 379.8 524 43.5
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 3.2e-103 379.8 536 45.0
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 4.1e-103 379.4 524 43.3
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 4.6e-102 375.9 534 44.8
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 4.6e-102 375.9 510 47.3
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 7.8e-102 375.2 520 45.8
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.0e-101 372.5 453 48.1
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 8.6e-101 371.7 528 41.5
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 1.1e-100 371.3 453 47.9
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.5e-100 370.9 455 47.0
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 2.5e-100 370.2 522 42.7
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 4.3e-100 369.4 540 43.7
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 4.3e-100 369.4 574 40.4
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 4.3e-100 369.4 526 41.6
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.6e-100 369.0 453 47.7
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 1.6e-99 367.5 522 43.1
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 2.1e-99 367.1 522 41.6
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.8e-98 364.0 559 42.6
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 8.9e-98 361.7 551 43.4
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 8.9e-98 361.7 456 45.2
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 3.4e-97 359.8 525 42.5
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 3.2e-95 353.2 541 42.7
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 7.1e-95 352.1 602 39.4
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 2.1e-94 350.5 479 43.6
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 6.0e-94 349.0 481 45.3
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.0e-93 348.2 453 46.1
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 3.9e-93 346.3 527 42.3
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 3.9e-93 346.3 541 41.6
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 6.6e-93 345.5 521 41.8
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 4.3e-92 342.8 522 40.4
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 1.2e-91 341.3 486 43.6
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 2.1e-91 340.5 523 40.0
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 2.0e-89 334.0 401 47.9
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 3.4e-89 333.2 492 41.1
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 2.9e-88 330.1 521 41.1
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 6.4e-88 328.9 529 40.3
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 6.4e-88 328.9 516 39.7
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 3.2e-87 326.6 522 39.5
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 5.4e-87 325.9 525 39.6
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 5.4e-87 325.9 522 39.5
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 7.1e-87 325.5 451 44.6
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 9.2e-87 325.1 524 39.1
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 9.2e-87 325.1 522 39.3
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 1.2e-86 324.7 492 40.2
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 1.2e-86 324.7 492 40.2
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 2.7e-86 323.6 522 39.1
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 4.6e-86 322.8 492 40.0
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 7.8e-86 322.0 453 43.5
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 1.3e-85 321.2 515 40.6
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 3.9e-85 319.7 516 39.3
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 3.9e-85 319.7 395 49.1
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 5.1e-85 319.3 481 41.0
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 6.6e-85 318.9 522 38.7
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 5.6e-84 315.8 549 42.1
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 2.1e-83 313.9 452 40.9
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 1.4e-82 311.2 523 38.4
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 2.6e-81 307.0 519 39.1
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 3.4e-81 306.6 400 45.2
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 9.9e-81 305.1 432 42.6
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 1.7e-80 304.3 521 39.0
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 1.1e-79 301.6 414 44.4
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 7.1e-79 298.9 334 50.3
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 2.3e-77 293.9 421 42.8
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 1.8e-74 284.3 248 62.5
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 4.0e-74 283.1 598 35.1
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 4.5e-73 279.6 584 35.6
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.3e-69 267.3 469 38.4
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.1e-66 258.5 294 52.0
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.3e-66 256.1 281 52.7
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.3e-66 256.1 281 52.7
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.3e-66 256.1 281 52.7
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.2e-62 245.0 475 34.7
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 2.1e-62 244.2 475 34.7
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 4.0e-58 229.9 458 36.9
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 2.0e-57 227.6 488 32.4
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.4e-55 221.5 224 56.7
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 5.5e-55 219.5 298 44.3
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 4.6e-54 216.5 274 47.4
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 8.7e-53 212.2 275 45.8
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 1.1e-52 211.8 314 43.0
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 5.7e-52 209.5 523 30.8
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.3e-45 187.6 230 43.9
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.3e-45 187.6 230 43.9
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 2.5e-44 184.1 290 41.4
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 3.7e-43 180.3 218 46.8
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 8.2e-43 179.1 203 53.2
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 1.4e-39 168.3 528 27.7
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.5e-39 167.5 229 45.0
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.0e-37 162.2 481 28.3
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.0e-37 162.2 481 28.3
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 1.8e-34 151.4 502 27.5
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 2.4e-34 151.0 123 64.2
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 1.7e-32 144.8 495 26.9
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.6e-30 138.3 334 30.8
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.8e-24 117.1 130 53.8
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 6.5e-24 116.3 91 62.6
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 1.1e-23 115.5 142 45.8
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.5e-23 115.2 249 32.9
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 1.5e-23 115.2 252 34.5
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.2e-22 112.1 172 40.1
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 4.7e-22 110.2 145 42.1
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 1.0e-21 109.0 91 57.1
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 8.8e-21 105.9 91 56.0
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.2e-20 105.5 75 70.7
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 8.2e-19 99.4 169 37.3
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 1.8e-18 98.2 87 58.6
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 2.7e-17 94.4 179 35.2
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.9e-17 93.2 46 95.7
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 5.9e-17 93.2 233 30.5
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.0e-16 92.4 301 29.2
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 1.0e-16 92.4 81 54.3
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 1.8e-13 81.6 81 51.9
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 2.3e-13 81.3 201 33.3
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 1.6e-09 68.6 66 51.5
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 2.0e-09 68.2 97 37.1
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 1.0e-08 65.9 56 58.9
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 2.3e-08 64.7 89 41.6
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 8.6e-08 62.8 55 52.7
Aa31LG6G5510 Aethionema arabicum HOM05D003594 ORTHO05D004268 9.5e-07 59.3 80 41.2


User provided reference genes

Program Settings