Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 6.4e-58 227.3 119 100.0
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 5.8e-43 177.6 113 83.2
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 5.8e-43 177.6 114 82.5
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 5.8e-43 177.6 115 81.7
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 9.9e-43 176.8 114 81.6
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.7e-42 176.0 113 82.3
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 2.2e-42 175.6 115 80.0
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 2.2e-42 175.6 115 80.9
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 2.9e-42 175.3 117 78.6
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 3.8e-42 174.9 117 77.8
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 3.8e-42 174.9 113 81.4
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 4.9e-42 174.5 113 80.5
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.4e-42 173.7 114 79.8
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 8.4e-42 173.7 113 81.4
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.1e-41 173.3 115 79.1
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.9e-41 172.6 113 81.4
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.9e-41 172.6 113 80.5
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.9e-41 172.6 115 78.3
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.9e-41 172.6 113 79.6
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 3.2e-41 171.8 113 80.5
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 3.2e-41 171.8 113 78.8
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 5.4e-41 171.0 112 80.4
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 7.1e-41 170.6 113 79.6
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 7.1e-41 170.6 113 80.5
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 7.1e-41 170.6 113 79.6
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 7.1e-41 170.6 113 80.5
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 9.3e-41 170.2 112 80.4
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.2e-40 169.9 113 78.8
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.2e-40 169.9 117 76.1
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 1.6e-40 169.5 113 78.8
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 1.6e-40 169.5 113 79.6
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.6e-40 169.5 113 79.6
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.6e-40 169.5 113 79.6
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 1.6e-40 169.5 113 79.6
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.6e-40 169.5 115 77.4
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 1.6e-40 169.5 115 77.4
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.6e-40 169.5 113 78.8
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.6e-40 169.5 117 75.2
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 2.1e-40 169.1 113 78.8
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 2.1e-40 169.1 113 78.8
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 2.1e-40 169.1 113 78.8
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 2.1e-40 169.1 113 78.8
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.1e-40 169.1 113 79.6
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 2.7e-40 168.7 113 79.6
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 2.7e-40 168.7 113 78.8
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 2.7e-40 168.7 113 77.9
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 3.5e-40 168.3 113 78.8
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 3.5e-40 168.3 113 78.8
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 3.5e-40 168.3 113 77.9
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 3.5e-40 168.3 113 78.8
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.5e-40 168.3 113 78.8
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.5e-40 168.3 113 78.8
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 4.6e-40 167.9 113 77.0
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 4.6e-40 167.9 117 76.1
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.6e-40 167.9 117 75.2
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 6.0e-40 167.5 113 78.8
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 6.0e-40 167.5 112 78.6
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 6.0e-40 167.5 113 77.9
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 6.0e-40 167.5 115 77.4
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 7.9e-40 167.2 113 78.8
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 7.9e-40 167.2 113 77.9
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 7.9e-40 167.2 115 76.5
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 1.0e-39 166.8 113 77.9
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.0e-39 166.8 113 77.9
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 1.0e-39 166.8 113 77.9
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.0e-39 166.8 113 77.9
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 1.0e-39 166.8 113 77.9
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.0e-39 166.8 113 77.9
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.0e-39 166.8 113 77.9
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.0e-39 166.8 113 77.9
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.3e-39 166.4 113 78.8
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.8e-39 166.0 117 76.9
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.8e-39 166.0 114 75.4
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 2.3e-39 165.6 113 77.0
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 2.3e-39 165.6 113 77.0
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 2.3e-39 165.6 113 76.1
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.3e-39 165.6 118 74.6
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 2.3e-39 165.6 112 79.5
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.3e-39 165.6 112 77.7
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 3.0e-39 165.2 113 77.0
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 3.0e-39 165.2 113 76.1
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 3.9e-39 164.9 112 77.7
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 6.7e-39 164.1 113 75.2
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 6.7e-39 164.1 113 76.1
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 6.7e-39 164.1 113 76.1
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 6.7e-39 164.1 113 76.1
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 8.7e-39 163.7 113 76.1
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-38 163.3 114 75.4
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.5e-38 162.9 117 73.5
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 1.5e-38 162.9 113 76.1
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.9e-38 162.5 140 65.7
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.9e-38 162.5 113 76.1
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.3e-38 161.8 119 71.4
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.3e-38 161.8 133 68.4
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 5.6e-38 161.0 113 74.3
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 5.6e-38 161.0 118 72.9
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 5.6e-38 161.0 113 73.5
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 5.6e-38 161.0 114 73.7
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 5.6e-38 161.0 113 75.2
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 7.4e-38 160.6 113 74.3
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 9.6e-38 160.2 113 75.2
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 9.6e-38 160.2 115 76.5
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.3e-37 159.8 119 69.7
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 2.1e-37 159.1 113 72.6
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 3.7e-37 158.3 115 75.7
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 3.7e-37 158.3 115 75.7
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 6.2e-37 157.5 115 74.8
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 6.2e-37 157.5 133 67.7
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.1e-36 156.8 115 70.4
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.8e-36 156.0 122 69.7
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 9.0e-36 153.7 115 69.6
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 9.0e-36 153.7 115 73.0
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 2.9e-34 148.7 155 58.7
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 4.2e-33 144.8 161 54.7
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 7.1e-33 144.1 118 63.6
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.7e-32 142.1 146 56.2
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 3.0e-31 138.7 173 50.9
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.0e-31 138.7 115 67.8
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.9e-31 138.3 155 52.9
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 1.1e-30 136.7 117 61.5
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 9.6e-30 133.7 116 61.2
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.4e-28 129.8 88 77.3
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 1.0e-26 123.6 83 75.9
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 1.0e-26 123.6 113 63.7
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.0e-26 123.6 115 58.3
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 4.2e-25 118.2 115 53.0
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 9.3e-25 117.1 78 78.2
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-24 116.7 114 60.5
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.6e-24 116.3 82 75.6
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 2.1e-24 115.9 77 77.9
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.3e-23 113.2 126 54.8
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 3.9e-23 111.7 92 68.5
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.1e-22 110.2 69 84.1
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 1.9e-22 109.4 69 82.6
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.5e-22 109.0 69 82.6
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.3e-22 108.6 69 84.1
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.3e-22 108.6 69 85.5
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.6e-21 106.3 69 81.2
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 1.7e-18 96.3 69 75.4
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.5e-17 91.3 60 78.3
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 6.1e-16 87.8 110 43.6
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 5.1e-15 84.7 58 77.6
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 9.1e-12 73.9 49 77.6
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 4.5e-11 71.6 115 34.8
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.9e-08 60.8 43 72.1
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.8e-07 59.7 69 55.1
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 2.3e-07 59.3 57 61.4
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.8e-07 57.4 34 85.3


User provided reference genes

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