Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia17844 Actinidia chinensis HOM05D000108 ORTHO05D001378 1.3e-119 433.0 208 100.0
Actinidia27934 Actinidia chinensis HOM05D000108 ORTHO05D001378 9.1e-68 260.8 188 75.0
vmacro19468 Vaccinium macrocarpon HOM05D000108 ORTHO05D001378 6.6e-50 201.4 164 65.2
Rhsim05G0079800 Rhododendron simsii HOM05D000108 ORTHO05D001378 4.3e-49 198.7 164 65.2
Hma1.2p1_1543F.1_g289800 Hydrangea macrophylla HOM05D000108 ORTHO05D001378 1.8e-47 193.4 179 60.3
TAR376G0097 Trochodendron aralioides HOM05D000108 ORTHO05D001378 4.9e-45 185.3 185 57.8
Dinv42117 Davidia involucrata HOM05D000108 ORTHO05D001378 2.4e-44 183.0 173 61.8
Lj9C361T16 Lonicera japonica HOM05D000108 ORTHO05D001378 3.0e-42 176.0 175 58.9
Oeu010585.1 Olea europaea HOM05D000108 ORTHO05D001378 1.2e-40 170.6 190 53.2
Cc02_g18360 Coffea canephora HOM05D000108 ORTHO05D001378 1.6e-40 170.2 173 59.0
SalBow6G5829 Salvia bowleyana HOM05D000108 ORTHO05D001378 1.4e-39 167.2 159 58.5
QL11p038632 Quercus lobata HOM05D000108 ORTHO05D001378 1.8e-39 166.8 175 56.6
Migut.B00303 Erythranthe guttata HOM05D000108 ORTHO05D001378 4.0e-39 165.6 159 57.2
Oeu003690.1 Olea europaea HOM05D000108 ORTHO05D001378 5.8e-38 161.8 171 55.0
MSTRG.20132 Avicennia marina HOM05D000108 ORTHO05D001378 9.9e-38 161.0 159 54.7
Prupe.8G115500 Prunus persica HOM05D000108 ORTHO05D001378 1.7e-37 160.2 166 56.0
MD10G1088400 Malus domestica HOM05D000108 ORTHO05D001378 2.9e-37 159.5 180 52.2
CSS0039161 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001378 4.9e-37 158.7 175 54.9
Eucgr.I01183 Eucalyptus grandis HOM05D000108 ORTHO05D001378 6.4e-37 158.3 184 56.0
GSVIVG01031809001 Vitis vinifera HOM05D000108 ORTHO05D001378 1.4e-36 157.1 175 54.3
Haze_01877 Corylus avellana HOM05D000108 ORTHO05D001378 3.2e-36 156.0 179 51.4
SGA_v2.0_scaffold58G20603 Striga asiatica HOM05D000108 ORTHO05D001378 3.2e-36 156.0 172 52.9
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 2.1e-35 153.3 172 52.3
CiPaw.05G056600 Carya illinoinensis HOM05D000108 ORTHO05D001378 3.5e-35 152.5 182 52.2
Nn5g29375 Nelumbo nucifera HOM05D000108 ORTHO05D001378 3.5e-35 152.5 174 52.3
CsaV3_2G014220 Cucumis sativus L. HOM05D000108 ORTHO05D001378 4.6e-35 152.1 183 54.1
Manes.15G144100 Manihot esculenta HOM05D000108 ORTHO05D001378 4.6e-35 152.1 182 53.8
Sed0010848 Sechium edule HOM05D000108 ORTHO05D001378 6.0e-35 151.8 181 51.4
MELO3C021920.2 Cucumis melo HOM05D000108 ORTHO05D001378 7.8e-35 151.4 183 53.0
Aqoxy5G01420 Aquilegia oxysepala HOM05D000108 ORTHO05D001378 5.1e-34 148.7 157 54.1
Atru.chr5.2828 Acer truncatum HOM05D000108 ORTHO05D001378 8.6e-34 147.9 185 53.0
CANSAT25G3251 Cannabis sativa HOM05D000108 ORTHO05D001378 1.1e-33 147.5 178 50.6
RcHm_v2.0_Chr6g0259391 Rosa chinensis HOM05D000108 ORTHO05D001378 1.1e-33 147.5 178 52.8
MBI16_g19904_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001378 1.9e-33 146.7 178 50.0
Peaxi162Scf00016g01521 Petunia axillaris HOM05D000108 ORTHO05D001378 9.5e-33 144.4 170 50.6
DCAR_029013 Daucus carota HOM05D000108 ORTHO05D001378 8.1e-32 141.4 174 49.4
Cpa.g.sc62.60 Carica papaya HOM05D000108 ORTHO05D001378 1.4e-31 140.6 184 50.5
PGR142G0773 Punica granatum HOM05D000108 ORTHO05D001378 1.2e-30 137.5 175 48.6
Thecc.02G094900 Theobroma cacao HOM05D000108 ORTHO05D001378 1.5e-30 137.1 178 52.2
Duzib248G1551 Durio zibethinus HOM05D000108 ORTHO05D001378 3.4e-30 136.0 178 52.2
COL.COLO4_11727 Corchorus olitorius HOM05D000108 ORTHO05D001378 4.4e-30 135.6 174 51.7
PSO170G6186 Papaver somniferum HOM05D000108 ORTHO05D001378 9.9e-30 134.4 173 50.9
ECA240G0498 Erigeron canadensis HOM05D000108 ORTHO05D001378 1.7e-29 133.7 175 47.4
FvH4_2g07030 Fragaria vesca HOM05D000108 ORTHO05D001378 1.7e-29 133.7 176 49.4
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.7e-29 133.7 176 49.4
Sc18g0004930 Simmondsia chinensis HOM05D000108 ORTHO05D001378 1.7e-29 133.7 178 48.3
Solyc01g108670.4 Solanum lycopersicum HOM05D000108 ORTHO05D001378 2.2e-29 133.3 170 47.6
Sopen01g050890 Solanum pennellii HOM05D000108 ORTHO05D001378 2.2e-29 133.3 170 47.6
TWI79G0871 Tripterygium wilfordii HOM05D000108 ORTHO05D001378 2.2e-29 133.3 177 50.8
Glyma.02G135700 Glycine max HOM05D000108 ORTHO05D001378 8.4e-29 131.3 181 51.4
Lalb_Chr09g0328141 Lupinus albus HOM05D000108 ORTHO05D001378 8.4e-29 131.3 183 48.6
Gohir.A03G190800 Gossypium hirsutum HOM05D000108 ORTHO05D001378 1.4e-28 130.6 178 49.4
Gorai.005G239700 Gossypium raimondii HOM05D000108 ORTHO05D001378 1.4e-28 130.6 178 49.4
ClCG09G017600 Citrullus lanatus HOM05D000108 ORTHO05D001378 1.9e-28 130.2 185 45.4
MD00G1050200 Malus domestica HOM05D000108 ORTHO05D001378 2.4e-28 129.8 123 59.3
Ah.01g020020 Amaranthus hybridus HOM05D000108 ORTHO05D001378 3.2e-28 129.4 179 46.4
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 4.2e-28 129.0 175 45.1
Lsat_1_v5_gn_7_87541 Lactuca sativa HOM05D000108 ORTHO05D001378 4.2e-28 129.0 157 47.1
Glyma.07G209300 Glycine max HOM05D000108 ORTHO05D001378 5.4e-28 128.6 181 49.7
Gohir.D02G211800 Gossypium hirsutum HOM05D000108 ORTHO05D001378 5.4e-28 128.6 178 48.9
VMungo0251G2641 Vigna mungo HOM05D000108 ORTHO05D001378 5.4e-28 128.6 181 49.7
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 9.2e-28 127.9 175 49.1
Hund00314 Selenicereus undatus HOM05D000108 ORTHO05D001378 1.0e-26 124.4 147 51.0
arahy.Tifrunner.gnm1.ann1.I9YSCG Arachis hypogaea HOM05D000108 ORTHO05D001378 6.6e-26 121.7 180 45.0
arahy.Tifrunner.gnm1.ann1.S11XWG Arachis hypogaea HOM05D000108 ORTHO05D001378 8.7e-26 121.3 180 45.0
Hund06191 Selenicereus undatus HOM05D000108 ORTHO05D001378 1.9e-25 120.2 179 46.9
Aa31LG8G5870 Aethionema arabicum HOM05D000108 ORTHO05D001378 3.3e-25 119.4 178 44.9
Phvul.003G293500 Phaseolus vulgaris HOM05D000108 ORTHO05D001378 5.6e-25 118.6 180 46.1
Psat7g123720 Pisum sativum HOM05D000108 ORTHO05D001378 9.6e-25 117.9 171 47.4
unitig_60.g25451 Utricularia gibba HOM05D000108 ORTHO05D001378 1.2e-24 117.5 174 44.8
HanXRQChr03g0072141 Helianthus annuus HOM05D000108 ORTHO05D001378 1.6e-24 117.1 175 45.1
CDE04G3640 Ceratophyllum demersum HOM05D000108 ORTHO05D001378 2.8e-24 116.3 207 38.6
HanXRQChr16g0505211 Helianthus annuus HOM05D000108 ORTHO05D001378 2.8e-24 116.3 155 44.5
Potri.004G145800 Populus trichocarpa HOM05D000108 ORTHO05D001378 6.2e-24 115.2 177 46.9
THA.LOC104803444 Tarenaya hassleriana HOM05D000108 ORTHO05D001378 6.2e-24 115.2 178 42.1
AL3G32440 Arabidopsis lyrata HOM05D000108 ORTHO05D001378 1.1e-23 114.4 178 45.5
ECA236G0887 Erigeron canadensis HOM05D000108 ORTHO05D001378 1.4e-23 114.0 157 44.6
Ciclev10027659m.g Citrus clementina HOM05D000108 ORTHO05D001378 3.1e-23 112.8 173 43.9
Sp3g17150 Schrenkiella parvula HOM05D000108 ORTHO05D001378 3.1e-23 112.8 179 44.7
Ca_18653_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001378 4.0e-23 112.5 173 45.1
CARHR094490 Cardamine hirsuta HOM05D000108 ORTHO05D001378 6.9e-23 111.7 176 46.6
AUR62011421 Chenopodium quinoa HOM05D000108 ORTHO05D001378 9.0e-23 111.3 181 44.2
AT3G19050 Arabidopsis thaliana HOM05D000108 ORTHO05D001378 1.2e-22 110.9 177 45.2
EL10Ac9g21810 Beta vulgaris HOM05D000108 ORTHO05D001378 1.2e-22 110.9 175 42.9
Medtr4g087040 Medicago truncatula HOM05D000108 ORTHO05D001378 2.6e-22 109.8 171 44.4
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.4e-22 109.4 217 39.2
Carub.0003s1888 Capsella rubella HOM05D000108 ORTHO05D001378 4.4e-22 109.0 177 44.6
AUR62016639 Chenopodium quinoa HOM05D000108 ORTHO05D001378 7.6e-22 108.2 184 44.6
A05p30550 Brassica napus HOM05D000108 ORTHO05D001378 3.8e-21 105.9 174 43.7
Lsat_1_v5_gn_9_108981 Lactuca sativa HOM05D000108 ORTHO05D001378 4.9e-21 105.5 183 39.9
unitig_0.g77 Utricularia gibba HOM05D000108 ORTHO05D001378 8.4e-21 104.8 174 43.1
BraA05t21894Z Brassica rapa HOM05D000108 ORTHO05D001378 1.1e-20 104.4 174 43.1
Thhalv10019870m.g Eutrema salsugineum HOM05D000108 ORTHO05D001378 1.9e-20 103.6 179 42.5
C05p46290 Brassica napus HOM05D000108 ORTHO05D001378 1.2e-19 100.9 174 42.5
BolC5t33358H Brassica oleracea HOM05D000108 ORTHO05D001378 1.6e-19 100.5 174 42.0
ECA233G5566 Erigeron canadensis HOM05D000108 ORTHO05D001378 1.6e-19 100.5 173 42.8
ATR0225G014 Amborella trichopoda HOM05D000108 ORTHO05D001378 4.6e-19 99.0 184 39.7
SEGI_19035 Sequoiadendron giganteum HOM05D000108 ORTHO05D001378 3.0e-18 96.3 202 36.6
Nitab4.5_0003726g0080 Nicotiana tabacum HOM05D000108 ORTHO05D001378 7.3e-17 91.7 123 48.0
HPP92_018727 Vanilla planifolia HOM05D000108 ORTHO05D001378 2.8e-16 89.7 170 39.4
Lj4g0019708 Lotus japonicus HOM05D000108 ORTHO05D001378 1.4e-15 87.4 178 42.1
CAN.G322.42 Capsicum annuum HOM05D000108 ORTHO05D001378 1.8e-15 87.0 171 38.6
CDE07G1027 Ceratophyllum demersum HOM05D000108 ORTHO05D001378 2.4e-15 86.7 185 36.8
Lsat_1_v5_gn_5_49361 Lactuca sativa HOM05D000108 ORTHO05D001378 9.0e-15 84.7 98 49.0
Zm00001eb135060 Zea mays HOM05D000108 ORTHO05D001378 2.6e-14 83.2 183 37.2
TAR636G1358 Trochodendron aralioides HOM05D000108 ORTHO05D001378 6.4e-13 78.6 161 36.6
ATR0796G054 Amborella trichopoda HOM05D000108 ORTHO05D001378 3.2e-12 76.3 149 35.6
vmacro07995 Vaccinium macrocarpon HOM05D000108 ORTHO05D001378 1.8e-10 70.5 107 40.2
MBI18_g28904_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001378 3.9e-10 69.3 97 41.2
Rhsim04G0246800 Rhododendron simsii HOM05D000108 ORTHO05D001378 8.7e-10 68.2 100 42.0
Manes.03G210501 Manihot esculenta HOM05D000108 ORTHO05D001378 1.5e-09 67.4 120 36.7
Dinv15629 Davidia involucrata HOM05D000108 ORTHO05D001378 2.5e-09 66.6 170 32.4
GSVIVG01017669001 Vitis vinifera HOM05D000108 ORTHO05D001378 2.5e-09 66.6 162 32.7
BcaB06g25958 Brassica carinata HOM05D000108 ORTHO05D001378 7.4e-09 65.1 68 54.4
Sed0025612 Sechium edule HOM05D000108 ORTHO05D001378 1.6e-08 63.9 123 37.4
CSS0036228 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001378 2.8e-08 63.2 112 37.5
Os12g0590500 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001378 2.8e-08 63.2 69 46.4
QL06p013773 Quercus lobata HOM05D000108 ORTHO05D001378 3.7e-08 62.8 115 39.1
CSS0024155 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001378 6.2e-08 62.0 141 32.6
PSO357G0690 Papaver somniferum HOM05D000108 ORTHO05D001378 8.1e-08 61.6 141 35.5
THA.LOC104824725 Tarenaya hassleriana HOM05D000108 ORTHO05D001378 1.4e-07 60.8 97 40.2
arahy.Tifrunner.gnm1.ann1.6MPP0P Arachis hypogaea HOM05D000108 ORTHO05D001378 1.8e-07 60.5 145 34.5
Gorai.006G081200 Gossypium raimondii HOM05D000108 ORTHO05D001378 2.4e-07 60.1 143 35.0
Nn4g25415 Nelumbo nucifera HOM05D000108 ORTHO05D001378 2.4e-07 60.1 124 38.7
FvH4_4g21170 Fragaria vesca HOM05D000108 ORTHO05D001378 3.1e-07 59.7 111 38.7
FAN12G0898 Fragaria x ananassa HOM05D000108 ORTHO05D001378 3.1e-07 59.7 111 38.7
CAN.G14.32 Capsicum annuum HOM05D000108 ORTHO05D001378 4.0e-07 59.3 105 40.0
ClCG06G004270 Citrullus lanatus HOM05D000108 ORTHO05D001378 4.0e-07 59.3 121 36.4
ECA246G1021 Erigeron canadensis HOM05D000108 ORTHO05D001378 5.3e-07 58.9 99 35.4
RcHm_v2.0_Chr4g0426741 Rosa chinensis HOM05D000108 ORTHO05D001378 6.9e-07 58.5 97 37.1
Lj6C699T8 Lonicera japonica HOM05D000108 ORTHO05D001378 9.0e-07 58.2 98 36.7
Phvul.003G119700 Phaseolus vulgaris HOM05D000108 ORTHO05D001378 9.0e-07 58.2 133 31.6
arahy.Tifrunner.gnm1.ann1.NH8KX3 Arachis hypogaea HOM05D000108 ORTHO05D001378 2.6e-06 56.6 116 37.1
Gohir.A09G067100 Gossypium hirsutum HOM05D000108 ORTHO05D001378 2.6e-06 56.6 125 36.8
Pp3c5_4080 Physcomitrium patens HOM05D000108 ORTHO05D001378 2.6e-06 56.6 115 33.9
Prupe.1G108800 Prunus persica HOM05D000108 ORTHO05D001378 2.6e-06 56.6 114 36.8
FAN07G0654 Fragaria x ananassa HOM05D000108 ORTHO05D001378 3.4e-06 56.2 111 36.9
FAN17G2964 Fragaria x ananassa HOM05D000108 ORTHO05D001378 3.4e-06 56.2 111 37.8
Solyc01g057320.3 Solanum lycopersicum HOM05D000108 ORTHO05D001378 3.4e-06 56.2 172 30.8
Actinidia02219 Actinidia chinensis HOM05D000108 ORTHO05D056377 4.5e-06 55.8 51 58.8
Aa31LG8G4280 Aethionema arabicum HOM05D000108 ORTHO05D001378 4.5e-06 55.8 132 34.8
Carub.0003s1707 Capsella rubella HOM05D000108 ORTHO05D001378 4.5e-06 55.8 155 33.5
Oeu012208.1 Olea europaea HOM05D000108 ORTHO05D001378 4.5e-06 55.8 170 27.1
PSO170G4871 Papaver somniferum HOM05D000108 ORTHO05D001378 5.8e-06 55.5 121 35.5
Sopen01g021940 Solanum pennellii HOM05D000108 ORTHO05D001378 7.6e-06 55.1 172 30.2
CARHR092680 Cardamine hirsuta HOM05D000108 ORTHO05D001378 9.9e-06 54.7 127 33.9
Lsat_1_v5_gn_6_117881 Lactuca sativa HOM05D000108 ORTHO05D001378 9.9e-06 54.7 116 35.3


User provided reference genes

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