Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 5.1e-105 384.4 193 100.0
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 4.0e-94 348.2 192 88.5
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 1.0e-92 343.6 192 85.4
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 1.1e-91 340.1 193 87.0
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 2.7e-90 335.5 193 83.9
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 1.3e-87 326.6 193 80.3
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 6.9e-86 320.9 193 79.3
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 3.4e-85 318.5 191 81.2
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 4.5e-85 318.2 192 82.3
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 5.8e-85 317.8 193 78.8
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 7.6e-85 317.4 191 79.6
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 3.8e-84 315.1 193 78.2
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 4.9e-84 314.7 193 80.8
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 6.5e-84 314.3 191 79.6
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 1.6e-82 309.7 190 81.6
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 2.1e-82 309.3 193 78.8
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 6.1e-82 307.8 192 78.6
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 7.9e-82 307.4 185 78.9
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 1.0e-81 307.0 193 78.8
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 1.8e-81 306.2 193 77.7
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 3.0e-81 305.4 193 76.7
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 3.9e-81 305.1 185 80.0
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 1.5e-80 303.1 193 78.8
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 3.3e-80 302.0 213 71.4
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 4.3e-80 301.6 235 66.0
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 7.4e-80 300.8 193 74.6
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 2.2e-79 299.3 192 76.0
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 2.8e-79 298.9 193 76.2
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 2.8e-79 298.9 191 79.6
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 4.8e-79 298.1 191 75.4
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 8.2e-79 297.4 194 74.7
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 8.2e-79 297.4 193 77.7
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 1.1e-78 297.0 191 75.9
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 1.4e-78 296.6 191 73.8
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 2.4e-78 295.8 190 74.7
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 5.3e-78 294.7 190 76.3
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 3.4e-77 292.0 191 73.3
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 4.5e-77 291.6 191 72.3
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 7.7e-77 290.8 189 73.5
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 7.7e-77 290.8 193 75.1
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 1.0e-76 290.4 185 77.3
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 1.3e-76 290.0 191 73.3
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 2.2e-76 289.3 191 71.2
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 5.0e-76 288.1 191 70.7
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 5.0e-76 288.1 185 75.7
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 6.5e-76 287.7 191 73.8
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 1.1e-75 287.0 193 74.6
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 4.2e-75 285.0 193 73.1
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 1.2e-74 283.5 177 76.3
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 1.2e-74 283.5 189 73.0
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 2.1e-74 282.7 193 74.1
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 7.9e-74 280.8 193 74.6
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 1.0e-73 280.4 185 75.7
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 1.0e-73 280.4 193 73.1
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 1.4e-73 280.0 190 68.9
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 1.8e-73 279.6 192 74.0
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 5.1e-73 278.1 193 68.9
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 8.8e-73 277.3 185 70.3
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.1e-72 276.9 191 68.1
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 2.5e-72 275.8 185 70.3
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 1.7e-71 273.1 176 75.0
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 4.8e-71 271.6 177 76.8
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 6.9e-70 267.7 182 70.3
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 3.4e-69 265.4 189 69.3
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 7.7e-69 264.2 169 76.3
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 2.9e-68 262.3 154 81.2
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 1.4e-67 260.0 189 65.1
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 4.2e-67 258.5 164 77.4
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 4.2e-67 258.5 164 77.4
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 2.7e-66 255.8 154 79.9
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 3.6e-66 255.4 182 67.0
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.0e-65 253.8 230 58.7
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 5.1e-65 251.5 170 73.5
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 7.4e-64 247.7 169 68.0
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 1.8e-62 243.0 153 75.2
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 1.7e-60 236.5 160 74.4
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 9.4e-59 230.7 209 58.4
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 2.4e-54 216.1 138 74.6
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 4.1e-54 215.3 138 74.6
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 1.2e-53 213.8 207 55.6
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 1.9e-51 206.5 129 76.0
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 1.5e-48 196.8 125 75.2
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 1.7e-47 193.4 144 69.4
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.7e-44 183.3 153 62.7
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 2.7e-42 176.0 109 77.1
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 4.0e-41 172.2 215 47.9
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 2.4e-38 162.9 103 75.7
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 3.8e-36 155.6 134 62.7
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 2.5e-35 152.9 133 57.9
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 4.7e-34 148.7 90 81.1
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 6.8e-33 144.8 76 96.1
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 3.2e-30 136.0 79 79.7
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 1.7e-28 130.2 190 42.6
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 7.3e-27 124.8 70 82.9
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 1.2e-26 124.0 140 52.1
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 1.3e-23 114.0 190 39.5
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 9.2e-22 107.8 73 67.1
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 2.0e-21 106.7 130 39.2
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 3.9e-20 102.4 60 83.3
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 6.6e-20 101.7 183 35.0
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 1.9e-19 100.1 183 33.3
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 3.6e-18 95.9 184 34.2
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 3.1e-17 92.8 60 78.3
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 6.8e-17 91.7 74 66.2
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 2.6e-16 89.7 60 68.3
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 9.8e-16 87.8 135 42.2
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 6.4e-15 85.1 166 39.2
arahy.Tifrunner.gnm1.ann1.BGC890 Arachis hypogaea HOM05D006972 ORTHO05D008519 1.5e-11 73.9 61 57.4
arahy.Tifrunner.gnm1.ann1.A1T4XS Arachis hypogaea HOM05D006972 ORTHO05D008519 4.7e-10 68.9 63 55.6
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 4.7e-10 68.9 174 29.3
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 5.4e-06 55.5 33 69.7
Lsat_1_v5_gn_3_12301 Lactuca sativa HOM05D035019 ORTHO05D008519 9.2e-06 54.7 32 78.1
Lsat_1_v5_gn_8_143201 Lactuca sativa HOM05D035019 ORTHO05D008519 9.2e-06 54.7 32 78.1


User provided reference genes

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