Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 3.6e-115 418.3 218 100.0
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 6.4e-96 354.4 220 87.7
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 4.1e-79 298.5 220 72.7
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 2.2e-72 276.2 201 74.6
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 6.4e-72 274.6 218 70.2
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 3.9e-69 265.4 223 67.3
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 3.6e-59 232.3 229 59.4
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 3.4e-57 225.7 228 59.6
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 1.3e-56 223.8 215 58.6
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 1.4e-55 220.3 225 58.7
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.4e-55 220.3 222 58.1
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 1.0e-53 214.2 240 55.0
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 6.7e-53 211.5 219 57.1
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 3.3e-52 209.1 225 56.4
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 1.6e-51 206.8 203 58.6
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 1.6e-51 206.8 210 56.2
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 3.7e-51 205.7 201 56.7
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 6.2e-51 204.9 204 58.3
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.8e-50 203.4 196 58.2
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 1.8e-50 203.4 203 55.7
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 9.0e-50 201.1 210 54.3
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.2e-49 200.7 191 58.6
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 1.0e-48 197.6 219 54.3
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.0e-48 197.6 196 57.7
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 4.9e-48 195.3 193 58.0
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 7.1e-47 191.4 211 53.1
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 9.3e-47 191.0 223 51.6
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 9.3e-47 191.0 229 50.2
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 1.2e-46 190.7 199 54.8
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 1.2e-46 190.7 211 53.1
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 2.1e-46 189.9 199 54.3
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 1.0e-45 187.6 168 63.7
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 1.0e-45 187.6 218 51.8
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 2.3e-45 186.4 217 51.2
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 3.9e-45 185.7 188 54.8
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 3.9e-45 185.7 187 55.1
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 3.3e-44 182.6 196 54.1
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 3.3e-44 182.6 204 52.5
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 3.3e-44 182.6 211 51.7
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 6.3e-43 178.3 169 60.4
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 1.1e-42 177.6 227 47.6
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.1e-42 177.6 195 50.8
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 4.1e-42 175.6 195 53.3
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 6.9e-42 174.9 235 47.2
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 9.0e-42 174.5 202 51.0
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 1.2e-41 174.1 190 52.6
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 1.2e-41 174.1 200 52.5
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 1.5e-41 173.7 221 50.2
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.6e-41 172.9 188 52.1
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 1.7e-40 170.2 218 50.0
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 2.2e-40 169.9 190 52.1
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 2.9e-40 169.5 190 48.9
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 5.0e-40 168.7 202 50.5
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 8.5e-40 167.9 219 45.7
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 1.1e-39 167.5 191 49.2
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 3.2e-39 166.0 214 49.1
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 4.2e-39 165.6 213 47.4
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 1.6e-38 163.7 213 47.9
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 2.1e-38 163.3 233 44.6
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 3.6e-38 162.5 210 48.6
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 3.6e-38 162.5 202 45.5
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 4.6e-38 162.2 195 45.6
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 6.1e-38 161.8 209 46.4
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 6.1e-38 161.8 195 46.7
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 7.9e-38 161.4 210 47.6
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 1.3e-37 160.6 220 46.4
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 1.3e-37 160.6 220 46.4
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 1.3e-37 160.6 200 46.5
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 1.8e-37 160.2 209 46.9
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 2.3e-37 159.8 202 47.5
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 3.9e-37 159.1 180 53.3
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 5.1e-37 158.7 211 46.0
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 5.1e-37 158.7 187 48.7
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 5.1e-37 158.7 213 47.9
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 5.1e-37 158.7 221 44.8
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 8.7e-37 157.9 192 49.0
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 1.1e-36 157.5 236 45.3
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 4.3e-36 155.6 214 43.9
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 4.3e-36 155.6 214 43.9
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 5.7e-36 155.2 186 48.9
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 7.4e-36 154.8 211 44.1
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 9.7e-36 154.5 212 44.3
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 9.7e-36 154.5 214 43.9
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 9.7e-36 154.5 222 45.0
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 2.2e-35 153.3 197 47.2
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 2.2e-35 153.3 168 51.2
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 2.8e-35 152.9 218 44.0
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 3.7e-35 152.5 210 43.8
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 8.2e-35 151.4 198 46.5
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 8.2e-35 151.4 194 47.4
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.1e-34 151.0 198 46.5
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.1e-34 151.0 198 47.5
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 1.8e-34 150.2 213 44.6
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 3.1e-34 149.4 220 42.3
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 3.1e-34 149.4 206 46.6
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 4.1e-34 149.1 193 47.2
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 9.1e-34 147.9 193 47.2
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 9.1e-34 147.9 202 46.0
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 1.2e-33 147.5 195 43.6
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 2.0e-33 146.7 180 47.2
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 2.6e-33 146.4 202 44.1
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 4.5e-33 145.6 227 42.3
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 5.9e-33 145.2 253 41.1
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.7e-32 143.7 222 44.1
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 2.2e-32 143.3 186 46.8
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 5.5e-31 138.7 267 37.5
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 5.5e-31 138.7 197 44.7
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 6.1e-30 135.2 191 45.5
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 2.2e-27 126.7 196 41.8
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 7.7e-25 118.2 288 34.0
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 9.7e-20 101.3 113 49.6
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 3.7e-19 99.4 94 56.4
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 8.2e-19 98.2 151 39.1
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 5.3e-18 95.5 165 38.2
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 5.3e-18 95.5 112 46.4
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 4.5e-17 92.4 78 57.7
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.8e-13 80.5 116 44.0
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 6.7e-13 78.6 146 38.4
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 4.4e-12 75.9 206 32.5
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 5.7e-12 75.5 89 51.7
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 2.8e-11 73.2 69 53.6
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.1e-10 71.2 57 59.6
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 5.3e-10 68.9 221 28.5
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 2.7e-06 56.6 42 66.7


User provided reference genes

Program Settings