Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.7e-98 362.1 191 100.0
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.4e-91 339.7 182 95.6
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.7e-87 324.7 182 91.2
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 2.2e-76 289.3 191 78.0
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 5.4e-75 284.6 168 82.7
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 7.8e-74 280.8 194 73.7
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 2.5e-72 275.8 184 72.8
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.3e-71 273.5 178 78.1
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 6.2e-71 271.2 192 74.0
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 1.8e-70 269.6 202 67.8
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 2.4e-70 269.2 180 73.3
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 3.1e-70 268.9 197 70.1
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 4.0e-70 268.5 182 73.1
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 5.3e-70 268.1 196 68.4
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 1.2e-69 266.9 178 74.7
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 2.0e-69 266.2 197 69.5
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 2.0e-69 266.2 177 72.9
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 2.6e-69 265.8 197 69.0
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 4.5e-69 265.0 179 73.2
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 5.8e-69 264.6 195 70.3
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 7.6e-69 264.2 177 72.3
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 9.9e-69 263.8 167 76.0
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 1.3e-68 263.5 184 71.2
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 1.7e-68 263.1 178 73.6
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.7e-68 263.1 189 69.8
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.2e-68 262.7 178 72.5
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 3.8e-68 261.9 182 69.2
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 3.8e-68 261.9 194 68.0
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 4.9e-68 261.5 173 73.4
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 4.9e-68 261.5 179 72.1
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 8.4e-68 260.8 193 69.9
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 8.4e-68 260.8 166 75.3
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 1.1e-67 260.4 177 74.6
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 1.1e-67 260.4 166 75.9
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 1.4e-67 260.0 166 74.1
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 3.2e-67 258.8 198 66.7
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 4.2e-67 258.5 178 73.0
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 5.4e-67 258.1 166 74.1
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 5.4e-67 258.1 189 66.1
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 5.4e-67 258.1 199 65.8
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 7.1e-67 257.7 166 74.1
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 7.1e-67 257.7 173 71.7
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 7.1e-67 257.7 179 70.9
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 7.1e-67 257.7 189 69.3
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.2e-66 256.9 178 71.9
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 1.2e-66 256.9 194 68.0
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.6e-66 256.5 166 73.5
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.6e-66 256.5 166 73.5
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.6e-66 256.5 166 74.1
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.6e-66 256.5 166 74.1
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 2.7e-66 255.8 173 71.1
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 2.7e-66 255.8 200 65.0
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 3.5e-66 255.4 180 71.1
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.5e-66 255.4 178 71.9
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 3.5e-66 255.4 193 65.3
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 3.5e-66 255.4 220 62.3
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 4.6e-66 255.0 179 69.3
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 6.0e-66 254.6 165 72.7
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 6.0e-66 254.6 178 70.8
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 1.0e-65 253.8 179 70.9
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 1.3e-65 253.4 184 69.0
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.8e-65 253.1 189 65.1
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.8e-65 253.1 164 71.3
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.8e-65 253.1 168 72.6
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 3.0e-65 252.3 176 68.2
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 3.0e-65 252.3 176 68.2
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 3.0e-65 252.3 188 66.5
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 3.9e-65 251.9 166 72.9
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 5.1e-65 251.5 166 71.7
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 5.1e-65 251.5 166 71.7
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 5.1e-65 251.5 166 71.7
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 5.1e-65 251.5 176 67.0
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 5.1e-65 251.5 176 67.6
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 5.1e-65 251.5 176 71.0
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 6.7e-65 251.1 189 68.3
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 6.7e-65 251.1 193 66.3
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 8.7e-65 250.8 166 72.3
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 8.7e-65 250.8 198 63.1
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.7e-65 250.8 189 68.3
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.5e-64 250.0 176 67.6
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.5e-64 250.0 176 67.6
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.5e-64 250.0 176 67.6
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 1.5e-64 250.0 180 71.1
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.5e-64 249.2 191 68.6
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 3.3e-64 248.8 190 65.8
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 5.6e-64 248.1 176 66.5
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 7.4e-64 247.7 176 65.9
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 7.4e-64 247.7 166 71.7
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 7.4e-64 247.7 191 68.1
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 7.4e-64 247.7 191 68.1
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.3e-63 246.9 176 66.5
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 2.1e-63 246.1 166 70.5
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.8e-63 245.7 191 67.5
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 8.1e-63 244.2 167 70.7
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 8.1e-63 244.2 189 68.3
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.1e-62 243.8 178 68.0
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.1e-62 243.8 167 70.7
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.4e-62 243.4 167 70.1
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.4e-62 242.7 181 65.7
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 9.0e-62 240.7 180 67.2
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 2.0e-61 239.6 180 67.2
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 3.4e-61 238.8 187 66.3
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 5.8e-61 238.0 191 64.9
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 7.6e-61 237.7 178 65.7
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 2.9e-60 235.7 182 62.6
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 4.2e-59 231.9 167 68.3
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 4.2e-59 231.9 196 63.3
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 7.1e-59 231.1 186 61.8
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 1.2e-58 230.3 155 69.0
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 1.6e-58 229.9 186 60.8
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 2.7e-58 229.2 188 63.3
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 7.9e-58 227.6 165 67.3
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.3e-57 226.9 190 61.1
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 3.9e-57 225.3 194 59.8
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 2.8e-55 219.2 178 64.6
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 8.1e-55 217.6 191 61.8
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.9e-51 206.5 129 77.5
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 7.9e-50 201.1 176 57.4
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 1.8e-49 199.9 160 61.2
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 6.7e-49 198.0 187 56.1
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 1.5e-48 196.8 183 59.0
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 1.9e-48 196.4 164 57.9
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 2.5e-48 196.1 185 51.9
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 7.4e-48 194.5 160 58.1
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.5e-45 186.8 171 55.0
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 2.6e-45 186.0 164 54.9
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.7e-44 183.3 166 54.2
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 2.7e-42 176.0 142 62.7
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 3.0e-41 172.6 186 49.5
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.9e-40 169.9 115 69.6
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 4.8e-39 165.2 170 55.9
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 6.3e-31 138.3 133 54.9
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.4e-30 136.3 129 55.0
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.6e-29 132.9 173 49.7
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 3.2e-27 125.9 147 46.9
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.2e-27 125.6 164 45.7
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 2.0e-24 116.7 62 87.1
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 3.3e-24 115.9 83 62.7
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 4.4e-24 115.5 124 49.2
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.3e-23 111.7 123 51.2
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 9.1e-22 107.8 62 77.4
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 4.5e-21 105.5 62 75.8
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 2.9e-20 102.8 149 40.9
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 5.0e-20 102.1 71 66.2
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 1.9e-19 100.1 161 39.8
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 2.6e-16 89.7 63 61.9
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 7.5e-16 88.2 100 46.0
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 9.7e-16 87.8 156 37.8
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 2.2e-15 86.7 50 80.0
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 3.1e-14 82.8 60 61.7
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 4.1e-14 82.4 68 52.9
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 2.7e-10 69.7 47 72.3
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 9.8e-08 61.2 34 82.4
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 8.3e-07 58.2 75 48.0


User provided reference genes

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