Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.6e-247 857.8 443 100.0
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 6.8e-222 773.9 398 100.0
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 8.4e-212 740.3 443 85.8
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.3e-209 732.3 447 85.0
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 4.8e-199 698.0 443 81.3
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 4.9e-196 688.0 463 76.9
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 5.5e-195 684.5 440 76.8
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 3.0e-193 678.7 416 83.7
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 3.3e-192 675.2 444 78.8
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 3.7e-191 671.8 447 77.4
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.8e-191 671.4 446 78.0
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.2e-189 666.8 448 76.3
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 1.5e-189 666.4 442 75.6
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.4e-189 665.2 442 75.6
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.0e-188 663.7 442 75.1
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 1.2e-186 656.8 459 75.4
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.0e-185 652.1 443 75.2
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 3.9e-185 651.7 447 74.5
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 6.3e-183 644.4 440 74.3
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.1e-182 643.7 447 74.5
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.2e-181 640.2 447 72.5
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 5.9e-181 637.9 450 74.9
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 3.8e-180 635.2 464 71.6
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 6.5e-180 634.4 461 70.7
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 3.2e-179 632.1 459 72.3
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.2e-178 630.2 442 75.6
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.3e-177 625.9 448 72.5
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.9e-177 625.2 416 76.0
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.1e-176 623.6 443 72.7
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 2.5e-176 622.5 448 71.2
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 3.3e-176 622.1 445 73.0
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 4.3e-176 621.7 450 71.3
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 2.0e-173 612.8 424 75.2
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 4.5e-173 611.7 423 75.4
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 6.5e-172 607.8 446 70.6
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.6e-170 603.2 427 72.8
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 2.7e-170 602.4 443 70.2
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 1.4e-169 600.1 446 70.0
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 1.4e-169 600.1 437 72.3
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 3.9e-169 598.6 418 71.8
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 2.0e-168 596.3 403 74.2
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 2.0e-168 596.3 413 73.1
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 2.2e-167 592.8 447 69.4
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 4.8e-167 591.7 431 72.9
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.8e-166 589.7 426 72.1
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 4.1e-166 588.6 445 68.1
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 5.3e-166 588.2 426 71.8
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.0e-164 583.9 405 71.1
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.3e-164 583.6 435 70.1
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.1e-163 580.5 415 71.1
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 4.2e-163 578.6 445 68.3
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.2e-162 577.0 445 68.8
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 1.4e-161 573.5 445 67.4
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 3.0e-161 572.4 445 68.1
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 2.6e-160 569.3 421 70.5
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 4.4e-160 568.5 392 75.0
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 5.7e-160 568.2 443 67.0
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 1.3e-159 567.0 423 71.4
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 6.3e-159 564.7 416 69.5
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 8.2e-159 564.3 450 66.9
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 4.1e-158 562.0 475 61.5
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 4.1e-158 562.0 475 64.4
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 5.3e-158 561.6 449 66.4
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 7.0e-158 561.2 445 64.7
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 3.8e-156 555.4 420 70.2
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 8.5e-156 554.3 493 63.9
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 7.2e-155 551.2 445 65.2
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 6.1e-154 548.1 473 62.2
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.8e-153 546.6 503 59.0
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 2.3e-153 546.2 382 72.8
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 6.8e-153 544.7 449 63.0
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 1.3e-151 540.4 376 76.1
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.8e-151 539.3 471 63.1
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.7e-151 538.9 474 62.7
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 8.3e-151 537.7 384 72.9
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 2.4e-150 536.2 450 62.0
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 3.1e-150 535.8 439 63.1
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 3.1e-150 535.8 452 64.2
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 5.3e-150 535.0 455 63.7
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 7.0e-150 534.6 425 66.6
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.0e-149 533.1 441 65.1
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 2.7e-149 532.7 451 61.0
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.0e-148 530.8 457 61.5
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.7e-148 530.0 427 65.1
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 2.2e-148 529.6 356 74.4
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 3.8e-148 528.9 485 61.9
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 6.5e-148 528.1 448 64.3
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 8.5e-148 527.7 445 64.5
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 5.5e-147 525.0 420 65.2
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 9.4e-147 524.2 452 61.7
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 9.4e-147 524.2 445 62.9
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 3.6e-146 522.3 422 64.7
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.6e-146 522.3 510 58.8
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.7e-146 521.9 459 61.7
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 4.7e-146 521.9 455 59.8
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 8.0e-146 521.2 401 66.1
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 4.0e-145 518.8 453 61.4
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.5e-144 516.9 453 60.9
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 8.3e-143 511.1 469 59.9
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 8.3e-143 511.1 426 64.6
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 3.1e-142 509.2 425 62.8
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 4.1e-142 508.8 447 60.4
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 5.4e-142 508.4 367 71.1
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.0e-140 504.2 401 66.1
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.7e-140 503.4 426 63.8
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 6.6e-140 501.5 444 59.2
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 2.5e-139 499.6 421 62.2
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 2.0e-136 490.0 452 58.4
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.3e-135 487.3 423 60.8
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 1.3e-135 487.3 423 60.8
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.8e-134 483.4 396 62.4
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 9.2e-134 481.1 398 64.6
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 5.0e-132 475.3 318 74.2
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 1.9e-131 473.4 446 57.8
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 1.2e-130 470.7 446 57.6
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 2.3e-129 466.5 409 59.7
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.9e-127 459.5 449 57.9
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.4e-126 456.4 460 53.3
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 5.4e-126 455.3 409 58.4
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 1.0e-124 451.1 381 59.3
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 6.6e-124 448.4 430 55.6
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 7.3e-123 444.9 264 80.3
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 9.5e-123 444.5 390 61.5
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 2.0e-120 436.8 437 54.0
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 1.3e-119 434.1 408 57.8
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 6.4e-119 431.8 455 54.9
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 3.2e-118 429.5 301 73.8
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 4.1e-118 429.1 447 52.3
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 9.2e-118 427.9 355 60.8
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 6.6e-116 421.8 314 68.5
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 8.6e-116 421.4 420 54.5
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 9.2e-110 401.4 329 60.5
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 8.9e-105 384.8 458 47.6
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 1.7e-103 380.6 345 58.6
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 9.6e-99 364.8 268 72.0
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 1.5e-96 357.5 287 64.1
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 9.9e-96 354.8 381 50.7
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 7.1e-94 348.6 405 48.9
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 1.6e-93 347.4 427 48.9
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 7.8e-93 345.1 405 48.9
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.3e-92 344.4 440 45.5
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 1.5e-91 340.9 473 43.3
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 1.3e-90 337.8 405 47.2
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 1.0e-84 318.2 430 45.3
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 1.3e-82 311.2 364 48.9
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 1.6e-82 310.8 364 48.9
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 9.0e-81 305.1 208 73.6
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 7.1e-78 295.4 350 48.3
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.2e-77 294.7 376 46.8
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 1.6e-77 294.3 353 48.2
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 9.0e-73 278.5 449 41.0
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 2.2e-71 273.9 448 40.4
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.7e-55 221.1 496 34.1
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.8e-50 203.8 153 65.4
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.4e-49 201.4 125 75.2
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 9.4e-46 188.7 200 48.5
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 1.7e-39 167.9 139 64.0
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 4.0e-36 156.8 94 75.5
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 6.8e-36 156.0 146 61.0
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 2.8e-34 150.6 166 48.2
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.6e-32 144.8 84 84.5
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.5e-30 137.5 133 57.9
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 1.0e-28 132.1 146 46.6
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 5.2e-28 129.8 204 41.2
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 2.8e-26 124.0 133 49.6
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 8.6e-23 112.5 99 52.5
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 7.2e-22 109.4 73 79.5
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 9.5e-22 109.0 94 56.4
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 6.1e-21 106.3 64 82.8
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.0e-20 105.5 94 53.2
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 4.0e-20 103.6 101 50.5
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 8.3e-18 95.9 96 58.3
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.7e-16 90.9 303 28.4
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 5.9e-16 89.7 196 36.7
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 7.8e-16 89.4 133 41.4
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 2.8e-13 80.9 137 38.0
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 8.9e-12 75.9 84 54.8
Atru.chr3.2269 Acer truncatum HOM05D003649 ORTHO05D004498 1.2e-11 75.5 84 53.6
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 9.8e-11 72.4 62 61.3
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 1.3e-10 72.0 96 40.6
SHI14583 Sapria himalayana HOM05D003649 ORTHO05D004498 3.7e-10 70.5 99 47.5
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 6.4e-10 69.7 49 63.3
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 4.1e-09 67.0 54 50.0
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 4.1e-09 67.0 54 50.0
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 5.4e-09 66.6 186 32.8
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 1.2e-08 65.5 39 79.5
SHI14588 Sapria himalayana HOM05D003649 ORTHO05D004498 5.6e-06 56.6 43 67.4


User provided reference genes

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