Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 4.7e-307 1057.0 511 100.0
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 5.1e-237 824.3 520 77.9
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 9.3e-231 803.5 524 73.7
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.7e-230 802.0 524 73.7
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 4.8e-227 791.2 600 68.2
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 5.2e-197 691.4 527 64.9
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 6.5e-192 674.5 525 62.1
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 1.5e-191 673.3 530 62.8
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 2.5e-191 672.5 527 62.2
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 3.3e-188 662.1 526 60.5
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 1.7e-187 659.8 471 67.1
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 4.8e-187 658.3 520 61.3
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 7.0e-186 654.4 522 61.7
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 4.5e-185 651.7 583 58.0
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 1.3e-184 650.2 520 61.9
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.3e-184 650.2 524 60.9
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 2.2e-184 649.4 527 61.1
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 2.2e-184 649.4 523 61.4
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 3.2e-183 645.6 520 61.0
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 2.1e-182 642.9 579 57.0
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 1.0e-181 640.6 524 60.9
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 1.4e-181 640.2 542 60.1
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 5.2e-181 638.3 537 59.8
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 5.2e-181 638.3 527 60.9
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 6.8e-181 637.9 527 60.9
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 1.2e-180 637.1 524 60.9
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 8.3e-179 630.9 465 66.5
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 1.8e-178 629.8 473 65.1
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 5.4e-178 628.2 525 58.1
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 2.2e-176 622.9 509 60.7
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 3.8e-176 622.1 569 56.6
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 2.5e-175 619.4 514 59.9
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 2.5e-175 619.4 479 63.5
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 9.5e-175 617.5 556 57.4
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.2e-174 617.1 516 60.1
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 2.8e-174 615.9 518 58.3
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 3.6e-174 615.5 468 63.5
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 4.7e-174 615.1 471 63.7
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 4.7e-174 615.1 516 60.1
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 1.4e-173 613.6 477 62.5
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 1.5e-172 610.1 520 59.0
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 4.4e-172 608.6 468 62.6
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 1.3e-171 607.1 531 56.9
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.7e-171 606.7 473 64.5
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 2.2e-171 606.3 524 57.6
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 8.3e-171 604.4 531 57.1
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 4.1e-170 602.1 470 63.8
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 4.1e-170 602.1 467 63.6
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 1.6e-169 600.1 465 62.4
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 3.5e-169 599.0 472 61.9
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 3.5e-169 599.0 472 62.3
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 1.7e-168 596.7 463 62.6
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 2.9e-168 595.9 473 61.9
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 3.8e-168 595.5 472 61.2
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 6.6e-168 594.7 516 57.6
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 8.6e-168 594.3 480 60.6
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 1.5e-167 593.6 522 57.3
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 7.3e-167 591.3 471 61.8
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 9.5e-167 590.9 469 62.7
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 1.2e-166 590.5 525 56.6
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 1.0e-165 587.4 528 57.6
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 4.0e-165 585.5 473 60.9
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 5.4e-162 575.1 474 60.1
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 1.7e-160 570.1 522 54.8
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 7.3e-159 564.7 633 48.0
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 1.2e-158 563.9 426 65.3
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 1.8e-157 560.1 475 58.3
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 4.0e-157 558.9 522 54.0
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 2.0e-156 556.6 468 58.5
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 2.6e-156 556.2 522 54.8
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 2.6e-156 556.2 522 54.8
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 5.8e-156 555.1 522 54.2
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 9.8e-156 554.3 522 53.6
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.3e-155 553.9 489 57.3
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.3e-155 553.9 489 57.3
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 1.7e-155 553.5 522 53.3
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 2.9e-155 552.7 523 54.3
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.7e-155 552.4 469 59.3
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.4e-154 549.7 517 56.1
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 3.2e-154 549.3 511 54.4
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 2.7e-153 546.2 524 54.2
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.0e-152 544.3 469 58.4
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 1.0e-152 544.3 539 53.2
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 1.3e-152 543.9 522 53.4
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 1.9e-151 540.0 470 58.3
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 2.2e-147 526.6 516 53.5
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 2.1e-145 520.0 478 55.0
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 7.8e-145 518.1 523 50.9
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 1.7e-144 516.9 545 49.0
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 2.7e-137 493.0 495 50.9
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 1.3e-136 490.7 517 50.7
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 3.9e-136 489.2 528 49.6
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 9.9e-132 474.6 300 74.3
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 2.1e-121 440.3 386 58.0
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 6.4e-115 418.7 358 59.5
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 1.6e-110 404.1 302 65.2
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.5e-103 380.9 292 62.3
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 2.0e-100 370.5 561 39.8
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 2.1e-97 360.5 355 52.1
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 8.7e-96 355.1 501 40.9
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 5.9e-92 342.4 542 38.0
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 7.4e-87 325.5 526 36.1
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.2e-78 297.4 265 57.0
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 2.8e-78 297.0 287 54.0
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 2.7e-73 280.4 252 56.3
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 4.4e-71 273.1 207 63.8
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 7.5e-71 272.3 297 48.5
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.7e-67 261.2 220 55.9
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 1.9e-66 257.7 259 51.7
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 9.1e-61 238.8 215 55.8
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 2.0e-52 211.1 314 38.5
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 3.5e-52 210.3 351 38.7
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 2.0e-39 167.9 181 48.6
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.9e-34 151.4 179 49.7
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 1.9e-29 134.8 76 80.3
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 3.6e-25 120.6 104 56.7
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.7e-20 104.4 146 39.7
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.0e-19 102.4 157 39.5
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.8e-17 94.4 75 62.7
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 3.4e-15 87.4 111 41.4
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 5.8e-15 86.7 76 52.6
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.2e-14 84.7 140 33.6
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 4.2e-13 80.5 41 87.8
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 2.6e-07 61.2 54 63.0
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 7.6e-07 59.7 64 51.6


User provided reference genes

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