Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.3e-169 599.7 314 100.0
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 6.7e-131 471.1 399 69.4
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 1.4e-107 393.7 413 58.1
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 4.1e-104 382.1 401 59.1
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 8.9e-99 364.4 372 55.1
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 1.5e-98 363.6 397 53.1
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 3.4e-98 362.5 366 56.0
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 7.5e-98 361.3 408 54.2
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 9.8e-98 360.9 398 52.0
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 9.8e-98 360.9 398 51.8
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 9.8e-98 360.9 398 53.3
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 2.2e-97 359.8 403 52.1
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 6.4e-97 358.2 394 53.3
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 8.3e-97 357.8 399 52.1
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 1.4e-96 357.1 399 51.6
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 1.4e-96 357.1 392 51.3
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 9.2e-96 354.4 398 52.3
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 1.6e-95 353.6 409 53.3
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 4.6e-95 352.1 396 53.0
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 5.9e-95 351.7 396 50.8
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 1.3e-94 350.5 390 51.0
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.7e-94 350.1 395 50.4
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 3.0e-94 349.4 396 50.5
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 3.0e-94 349.4 290 62.1
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 3.9e-94 349.0 375 56.0
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 8.6e-94 347.8 394 52.5
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.1e-93 347.4 358 56.7
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.1e-93 347.4 289 63.3
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.9e-93 346.7 289 63.0
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.9e-93 346.7 292 61.6
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 2.5e-93 346.3 336 56.2
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.3e-93 345.9 289 63.0
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.3e-93 345.9 289 63.0
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 4.3e-93 345.5 340 56.2
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 9.5e-93 344.4 399 50.9
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 9.5e-93 344.4 288 61.1
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 2.1e-92 343.2 292 61.0
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 2.8e-92 342.8 287 61.7
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.8e-92 342.8 396 51.3
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 2.8e-92 342.8 285 61.4
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 4.7e-92 342.0 398 50.5
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 6.2e-92 341.7 387 54.5
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 6.2e-92 341.7 343 55.7
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 8.0e-92 341.3 397 52.1
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.0e-91 340.9 397 52.1
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.4e-91 340.5 398 52.3
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 1.4e-91 340.5 400 49.5
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 2.3e-91 339.7 389 50.1
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 3.1e-91 339.3 285 61.4
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.1e-91 339.3 396 49.2
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 3.1e-91 339.3 399 51.9
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 5.2e-91 338.6 411 49.4
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 6.8e-91 338.2 289 60.6
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 1.2e-90 337.4 397 49.6
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 1.2e-90 337.4 295 60.3
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.2e-90 337.4 396 50.0
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 1.5e-90 337.0 387 51.9
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.0e-90 336.7 396 49.5
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 2.0e-90 336.7 401 55.6
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 2.6e-90 336.3 290 60.0
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 2.6e-90 336.3 401 52.4
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 2.6e-90 336.3 285 61.8
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 3.4e-90 335.9 402 50.5
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 4.4e-90 335.5 290 60.0
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 4.4e-90 335.5 290 59.7
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 5.8e-90 335.1 397 49.4
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 5.8e-90 335.1 287 59.9
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 7.5e-90 334.7 289 59.2
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 7.5e-90 334.7 292 58.9
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 1.3e-89 334.0 290 59.3
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 1.3e-89 334.0 349 53.0
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 1.7e-89 333.6 400 49.8
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.2e-89 333.2 396 48.7
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 2.9e-89 332.8 295 59.7
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 3.7e-89 332.4 291 58.4
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 3.7e-89 332.4 344 53.2
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 4.9e-89 332.0 290 59.3
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 6.4e-89 331.6 293 59.7
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 8.3e-89 331.3 290 59.0
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 8.3e-89 331.3 286 60.8
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 1.9e-88 330.1 289 59.2
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 2.4e-88 329.7 290 59.0
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 2.4e-88 329.7 399 49.4
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 3.2e-88 329.3 291 58.8
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 3.2e-88 329.3 291 58.8
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 3.2e-88 329.3 290 59.0
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 5.4e-88 328.6 289 58.8
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 5.4e-88 328.6 390 49.2
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 2.7e-87 326.2 289 59.2
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 4.6e-87 325.5 399 49.4
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 1.7e-86 323.6 342 54.1
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 1.7e-86 323.6 339 54.9
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 1.7e-86 323.6 310 56.1
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.3e-86 323.2 285 57.2
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 3.0e-86 322.8 350 50.3
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 8.6e-86 321.2 439 45.3
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 1.1e-85 320.9 314 55.1
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 9.5e-85 317.8 421 45.6
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.0e-83 312.4 294 56.8
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 1.2e-82 310.8 318 53.5
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 4.1e-80 302.4 253 61.3
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 4.1e-80 302.4 492 42.7
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 7.1e-80 301.6 363 53.2
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 3.9e-78 295.8 282 53.9
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 5.1e-78 295.4 306 52.3
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 6.6e-78 295.0 289 52.2
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 1.5e-77 293.9 295 51.9
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 4.3e-77 292.4 265 57.7
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 1.7e-73 280.4 280 52.9
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.7e-73 280.4 264 54.2
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.7e-71 273.1 382 44.8
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 2.5e-69 266.5 265 53.6
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 6.2e-68 261.9 403 42.7
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.4e-67 260.8 281 48.8
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 5.2e-67 258.8 395 43.8
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 3.8e-65 252.7 272 48.2
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 1.9e-64 250.4 435 40.9
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 7.1e-64 248.4 279 47.7
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 1.3e-60 237.7 272 46.0
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 3.6e-60 236.1 333 47.7
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 1.1e-59 234.6 274 45.3
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 1.3e-54 217.6 227 65.6
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 3.0e-54 216.5 224 54.5
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 1.3e-52 211.1 219 53.4
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 3.1e-51 206.5 133 72.9
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 7.6e-50 201.8 100 89.0
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 3.5e-47 193.0 143 65.7
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 1.8e-43 180.6 110 81.8
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 5.3e-35 152.5 94 68.1
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 2.5e-32 143.7 99 69.7
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.5e-29 133.7 126 58.7
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 3.3e-29 133.3 84 73.8
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 8.2e-28 128.6 66 86.4
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.4e-27 127.9 66 83.3
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 7.9e-23 112.1 66 75.8
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 5.1e-22 109.4 155 45.2
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 1.5e-21 107.8 110 53.6
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 5.9e-18 95.9 54 75.9
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 5.0e-17 92.8 56 75.0
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 1.8e-14 84.3 66 60.6
Lsat_1_v5_gn_8_121800 Lactuca sativa HOM05D001816 ORTHO05D002001 1.7e-12 77.8 92 51.1
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 3.2e-08 63.5 48 60.4
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 1.8e-06 57.8 67 53.7


User provided reference genes

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