Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia11887 Actinidia chinensis HOM05D000827 ORTHO05D001576 1.2e-75 286.6 167 100.0
Actinidia39271 Actinidia chinensis HOM05D000827 ORTHO05D001576 3.8e-56 221.9 161 83.2
Dinv07406 Davidia involucrata HOM05D000827 ORTHO05D001576 3.6e-38 162.2 181 61.3
Dinv13968 Davidia involucrata HOM05D000827 ORTHO05D001576 1.0e-37 160.6 182 55.5
vmacro15761 Vaccinium macrocarpon HOM05D000827 ORTHO05D001576 2.3e-37 159.5 167 58.1
GSVIVG01003333001 Vitis vinifera HOM05D000827 ORTHO05D001576 4.5e-33 145.2 170 60.6
GSVIVG01003340001 Vitis vinifera HOM05D000827 ORTHO05D001576 1.0e-32 144.1 168 61.9
Hma1.2p1_0657F.1_g197130 Hydrangea macrophylla HOM05D000827 ORTHO05D001576 5.0e-32 141.7 205 56.1
Duzib235G0579 Durio zibethinus HOM05D000827 ORTHO05D001576 7.2e-31 137.9 187 54.5
Prupe.4G010100 Prunus persica HOM05D000827 ORTHO05D001576 7.2e-31 137.9 174 55.7
TAR627G1209 Trochodendron aralioides HOM05D000827 ORTHO05D001576 7.2e-31 137.9 165 55.2
Duzib192G1053 Durio zibethinus HOM05D000827 ORTHO05D001576 9.4e-31 137.5 190 53.7
Ciclev10015752m.g Citrus clementina HOM05D000827 ORTHO05D001576 2.1e-30 136.3 177 48.6
TAR626G0283 Trochodendron aralioides HOM05D000827 ORTHO05D001576 2.1e-30 136.3 161 55.9
TAR627G0441 Trochodendron aralioides HOM05D000827 ORTHO05D001576 2.7e-30 136.0 165 54.5
TWI38G1318 Tripterygium wilfordii HOM05D000827 ORTHO05D001576 3.6e-30 135.6 186 49.5
Cfa000097 Carpinus fangiana HOM05D000827 ORTHO05D001576 6.1e-30 134.8 192 49.5
CiPaw.10G078100 Carya illinoinensis HOM05D000827 ORTHO05D001576 7.9e-30 134.4 179 58.7
Haze_06935 Corylus avellana HOM05D000827 ORTHO05D001576 7.9e-30 134.4 109 72.5
Haze_06928 Corylus avellana HOM05D000827 ORTHO05D001576 1.4e-29 133.7 111 70.3
MSTRG.7167 Avicennia marina HOM05D000827 ORTHO05D001576 5.1e-29 131.7 168 51.2
QL05p069625 Quercus lobata HOM05D000827 ORTHO05D001576 2.0e-28 129.8 210 45.2
Gohir.D10G009000 Gossypium hirsutum HOM05D000827 ORTHO05D001576 2.6e-28 129.4 184 53.3
Gorai.011G009800 Gossypium raimondii HOM05D000827 ORTHO05D001576 3.3e-28 129.0 184 53.3
Manes.09G076605 Manihot esculenta HOM05D000827 ORTHO05D001576 3.3e-28 129.0 200 51.0
Nn1g07395 Nelumbo nucifera HOM05D000827 ORTHO05D001576 4.4e-28 128.6 174 57.5
TAR629G3131 Trochodendron aralioides HOM05D000827 ORTHO05D001576 4.4e-28 128.6 173 54.9
Gohir.A06G205100 Gossypium hirsutum HOM05D000827 ORTHO05D001576 5.7e-28 128.3 194 51.0
Gorai.010G249800 Gossypium raimondii HOM05D000827 ORTHO05D001576 5.7e-28 128.3 194 53.1
CSS0017282 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D022146 1.7e-27 126.7 95 82.1
Oeu016819.1 Olea europaea HOM05D000827 ORTHO05D001576 1.7e-27 126.7 169 55.6
Phvul.003G083900 Phaseolus vulgaris HOM05D000827 ORTHO05D001576 3.7e-27 125.6 170 49.4
Oeu009392.1 Olea europaea HOM05D000827 ORTHO05D001576 6.3e-27 124.8 169 55.6
Duzib160G0265 Durio zibethinus HOM05D000827 ORTHO05D001576 8.2e-27 124.4 187 51.3
Gohir.A10G009300 Gossypium hirsutum HOM05D000827 ORTHO05D001576 8.2e-27 124.4 184 47.3
MD05G1358100 Malus domestica HOM05D000827 ORTHO05D001576 1.4e-26 123.6 179 54.2
VMungo1215G2936 Vigna mungo HOM05D000827 ORTHO05D001576 1.8e-26 123.2 171 49.7
TWI63G0892 Tripterygium wilfordii HOM05D000827 ORTHO05D001576 2.4e-26 122.9 184 47.8
Gohir.D06G216400 Gossypium hirsutum HOM05D000827 ORTHO05D001576 4.1e-26 122.1 194 51.5
Glyma.17G008600 Glycine max HOM05D000827 ORTHO05D001576 5.3e-26 121.7 169 49.7
THA.LOC104813595 Tarenaya hassleriana HOM05D000827 ORTHO05D001576 1.2e-25 120.6 182 45.6
Rhsim02G0099300 Rhododendron simsii HOM05D000827 ORTHO05D001576 1.5e-25 120.2 83 77.1
Sabra06G0008800 Salix brachista HOM05D000827 ORTHO05D001576 1.5e-25 120.2 205 47.3
FAN21G1683 Fragaria x ananassa HOM05D000827 ORTHO05D001576 3.4e-25 119.0 180 47.2
SalBow8G2601 Salvia bowleyana HOM05D000827 ORTHO05D001576 4.5e-25 118.6 175 48.0
BraA03t14415Z Brassica rapa HOM05D000827 ORTHO05D001576 5.9e-25 118.2 185 43.8
Sabra16G0016000 Salix brachista HOM05D000827 ORTHO05D001576 5.9e-25 118.2 203 46.8
Potri.016G013400 Populus trichocarpa HOM05D000827 ORTHO05D001576 1.0e-24 117.5 209 42.6
Sabra16G0002000 Salix brachista HOM05D000827 ORTHO05D001576 1.0e-24 117.5 205 46.8
CiPaw.09G102600 Carya illinoinensis HOM05D000827 ORTHO05D001576 1.3e-24 117.1 177 49.7
Cpa.g.sc75.114 Carica papaya HOM05D000827 ORTHO05D001576 1.7e-24 116.7 215 48.4
Glyma.07G265400 Glycine max HOM05D000827 ORTHO05D001576 1.7e-24 116.7 164 48.8
CANSAT56G2793 Cannabis sativa HOM05D000827 ORTHO05D001576 2.2e-24 116.3 108 62.0
Solyc11g012290.2 Solanum lycopersicum HOM05D000827 ORTHO05D001576 5.0e-24 115.2 180 46.7
Thecc.06G233700 Theobroma cacao HOM05D000827 ORTHO05D001576 5.0e-24 115.2 195 50.8
THA.LOC104806331 Tarenaya hassleriana HOM05D000827 ORTHO05D001576 6.5e-24 114.8 182 42.3
FAN25G2911 Fragaria x ananassa HOM05D000827 ORTHO05D001576 8.5e-24 114.4 183 44.8
THA.LOC104812994 Tarenaya hassleriana HOM05D000827 ORTHO05D001576 8.5e-24 114.4 188 44.1
RcHm_v2.0_Chr5g0001471 Rosa chinensis HOM05D000827 ORTHO05D001576 1.1e-23 114.0 182 47.8
Atru.chr1.2445 Acer truncatum HOM05D000827 ORTHO05D001576 1.4e-23 113.6 189 44.4
FvH4_3g00950 Fragaria vesca HOM05D000827 ORTHO05D001576 1.4e-23 113.6 183 48.6
MD10G1332000 Malus domestica HOM05D000827 ORTHO05D001576 1.9e-23 113.2 191 50.8
Thhalv10025487m.g Eutrema salsugineum HOM05D000827 ORTHO05D001576 5.5e-23 111.7 201 40.8
Sopen11g007070 Solanum pennellii HOM05D000827 ORTHO05D001576 5.5e-23 111.7 179 44.1
Potri.006G010700 Populus trichocarpa HOM05D000827 ORTHO05D001576 7.2e-23 111.3 207 44.4
Migut.M01398 Erythranthe guttata HOM05D000827 ORTHO05D001576 1.2e-22 110.5 161 47.8
PGSC0003DMG400013280 Solanum tuberosum HOM05D000827 ORTHO05D001576 1.6e-22 110.2 184 51.6
Manes.08G070900 Manihot esculenta HOM05D000827 ORTHO05D001576 2.1e-22 109.8 133 51.9
AL7G31250 Arabidopsis lyrata HOM05D000827 ORTHO05D001576 3.6e-22 109.0 198 43.9
C07p51820 Brassica napus HOM05D000827 ORTHO05D001576 3.6e-22 109.0 191 41.4
Sp7g20490 Schrenkiella parvula HOM05D000827 ORTHO05D001576 3.6e-22 109.0 194 42.8
Sc05g0009600 Simmondsia chinensis HOM05D000827 ORTHO05D001576 4.7e-22 108.6 181 43.1
Carub.0007s1894 Capsella rubella HOM05D000827 ORTHO05D001576 6.1e-22 108.2 204 41.7
Oeu007168.3 Olea europaea HOM05D000827 ORTHO05D001576 1.8e-21 106.7 164 49.4
BolC7t45684H Brassica oleracea HOM05D000827 ORTHO05D001576 3.0e-21 105.9 192 41.7
BcaNung02498 Brassica carinata HOM05D000827 ORTHO05D001576 3.9e-21 105.5 202 44.1
CARHR229270 Cardamine hirsuta HOM05D000827 ORTHO05D001576 3.9e-21 105.5 210 41.0
PGR042G2655 Punica granatum HOM05D000827 ORTHO05D001576 2.6e-20 102.8 163 49.7
AT4G22360 Arabidopsis thaliana HOM05D000827 ORTHO05D001576 3.3e-20 102.4 205 38.5
BcaB03g11728 Brassica carinata HOM05D000827 ORTHO05D001576 7.4e-20 101.3 198 42.4
SGA_v2.0_scaffold4G01873 Striga asiatica HOM05D000827 ORTHO05D001576 7.4e-20 101.3 169 45.6
COL.COLO4_31888 Corchorus olitorius HOM05D000827 ORTHO05D001576 6.3e-19 98.2 56 85.7
Lj4g0007136 Lotus japonicus HOM05D000827 ORTHO05D001576 1.1e-18 97.4 60 78.3
arahy.Tifrunner.gnm1.ann1.0HJ3TW Arachis hypogaea HOM05D000827 ORTHO05D001576 1.4e-18 97.1 61 78.7
arahy.Tifrunner.gnm1.ann1.PC5DAD Arachis hypogaea HOM05D000827 ORTHO05D001576 1.4e-18 97.1 61 78.7
C03p84120 Brassica napus HOM05D000827 ORTHO05D001576 9.1e-18 94.4 178 42.1
A03p53490 Brassica napus HOM05D000827 ORTHO05D001576 1.6e-17 93.6 60 75.0
CDE06G0687 Ceratophyllum demersum HOM05D000827 ORTHO05D001576 3.5e-17 92.4 97 57.7
Oeu005978.1 Olea europaea HOM05D000827 ORTHO05D001576 3.5e-17 92.4 172 47.1
Lj1A883T37 Lonicera japonica HOM05D000827 ORTHO05D001576 7.7e-17 91.3 167 41.3
Aa31LG6G4460 Aethionema arabicum HOM05D000827 ORTHO05D001576 1.0e-16 90.9 213 38.5
BcaC01g00773 Brassica carinata HOM05D000827 ORTHO05D001576 3.8e-16 89.0 170 40.0
BolC3t20691H Brassica oleracea HOM05D000827 ORTHO05D001576 5.0e-16 88.6 169 40.8
Actinidia00107 Actinidia chinensis HOM05D000827 ORTHO05D001576 6.5e-16 88.2 173 38.7
BraA01t01317Z Brassica rapa HOM05D000827 ORTHO05D001576 1.1e-15 87.4 118 48.3
Nitab4.5_0000143g0210 Nicotiana tabacum HOM05D000827 ORTHO05D001576 1.1e-15 87.4 55 80.0
C01p16630 Brassica napus HOM05D000827 ORTHO05D001576 1.5e-15 87.0 177 40.1
A01p13720 Brassica napus HOM05D000827 ORTHO05D001576 1.9e-15 86.7 177 38.4
DCAR_022598 Daucus carota HOM05D000827 ORTHO05D001576 1.9e-15 86.7 89 56.2
BolC1t01610H Brassica oleracea HOM05D000827 ORTHO05D001576 4.2e-15 85.5 118 50.8
Hma1.2p1_0036F.1_g022970 Hydrangea macrophylla HOM05D000827 ORTHO05D001576 7.2e-15 84.7 179 39.7
Lsat_1_v5_gn_4_62081 Lactuca sativa HOM05D000827 ORTHO05D001576 7.2e-15 84.7 195 39.0
CDE04G0498 Ceratophyllum demersum HOM05D000827 ORTHO05D001576 1.2e-14 84.0 107 48.6
Oeu005502.1 Olea europaea HOM05D000827 ORTHO05D001576 1.2e-14 84.0 167 37.1
HanXRQChr01g0006761 Helianthus annuus HOM05D000827 ORTHO05D001576 2.1e-14 83.2 201 36.8
CAN.G1186.42 Capsicum annuum HOM05D000827 ORTHO05D001576 3.6e-14 82.4 173 46.8
Aqoxy1G04064 Aquilegia oxysepala HOM05D000827 ORTHO05D001576 4.7e-14 82.0 82 61.0
Hma1.2p1_1199F.1_g266370 Hydrangea macrophylla HOM05D000827 ORTHO05D001576 4.7e-14 82.0 178 42.7
A08p15670 Brassica napus HOM05D000827 ORTHO05D001576 6.1e-14 81.6 184 36.4
BraA08t33547Z Brassica rapa HOM05D000827 ORTHO05D001576 6.1e-14 81.6 184 36.4
HPP92_015775 Vanilla planifolia HOM05D000827 ORTHO05D001576 8.0e-14 81.3 172 37.8
Cfa020258 Carpinus fangiana HOM05D000827 ORTHO05D001576 2.3e-13 79.7 170 37.1
Rhsim06G0225300 Rhododendron simsii HOM05D000827 ORTHO05D001576 2.3e-13 79.7 164 39.6
CSS0028661 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001576 5.2e-13 78.6 128 44.5
Glyma.08G324000 Glycine max HOM05D000827 ORTHO05D001576 6.7e-13 78.2 163 36.2
Lsat_1_v5_gn_0_26921 Lactuca sativa HOM05D000827 ORTHO05D001576 6.7e-13 78.2 90 60.0
GSVIVG01037751001 Vitis vinifera HOM05D000827 ORTHO05D001576 2.0e-12 76.6 168 37.5
CiPaw.11G196600 Carya illinoinensis HOM05D000827 ORTHO05D001576 3.3e-12 75.9 90 48.9
Cc05_g14490 Coffea canephora HOM05D000827 ORTHO05D001576 4.4e-12 75.5 107 43.0
Haze_09762 Corylus avellana HOM05D000827 ORTHO05D001576 1.7e-11 73.6 147 38.1
Prupe.4G228000 Prunus persica HOM05D000827 ORTHO05D001576 1.7e-11 73.6 184 33.2
Sed0004279 Sechium edule HOM05D000827 ORTHO05D001576 1.7e-11 73.6 167 35.9
FAN16G2407 Fragaria x ananassa HOM05D000827 ORTHO05D001576 3.7e-11 72.4 88 50.0
FAN21G2074 Fragaria x ananassa HOM05D000827 ORTHO05D001576 4.8e-11 72.0 88 50.0
FvH4_3g30330 Fragaria vesca HOM05D000827 ORTHO05D001576 6.3e-11 71.6 88 50.0
Phvul.006G049900 Phaseolus vulgaris HOM05D000827 ORTHO05D001576 6.3e-11 71.6 171 33.9
MD03G1190700 Malus domestica HOM05D000827 ORTHO05D001576 8.2e-11 71.2 178 36.0
RcHm_v2.0_Chr5g0056201 Rosa chinensis HOM05D000827 ORTHO05D001576 1.4e-10 70.5 105 50.5
Actinidia05051 Actinidia chinensis HOM05D000827 ORTHO05D001576 2.4e-10 69.7 167 46.7
FAN11G1151 Fragaria x ananassa HOM05D000827 ORTHO05D001576 2.4e-10 69.7 88 48.9
PSO675G1846 Papaver somniferum HOM05D000827 ORTHO05D001576 3.1e-10 69.3 132 42.4
Peaxi162Scf00352g00212 Petunia axillaris HOM05D000827 ORTHO05D001576 3.1e-10 69.3 44 75.0
MELO3C013104.2 Cucumis melo HOM05D000827 ORTHO05D001576 4.1e-10 68.9 182 34.1
MD11G1207400 Malus domestica HOM05D000827 ORTHO05D001576 4.1e-10 68.9 168 36.9
CSS0043352 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001576 5.3e-10 68.6 167 39.5
CANSAT21G1963 Cannabis sativa HOM05D000827 ORTHO05D001576 9.1e-10 67.8 179 30.7
CANSAT56G2789 Cannabis sativa HOM05D000827 ORTHO05D001576 9.1e-10 67.8 179 30.7
ClCG09G020920 Citrullus lanatus HOM05D000827 ORTHO05D001576 1.2e-09 67.4 103 42.7
CsaV3_7G018820 Cucumis sativus L. HOM05D000827 ORTHO05D001576 1.2e-09 67.4 181 34.8
SGA_v2.0_scaffold8G04384 Striga asiatica HOM05D000827 ORTHO05D001576 1.2e-09 67.4 162 39.5
DCAR_016641 Daucus carota HOM05D000827 ORTHO05D001576 3.5e-09 65.9 97 46.4
PGR031G0456 Punica granatum HOM05D000827 ORTHO05D001576 3.5e-09 65.9 192 33.9
Lj1C1240G4 Lonicera japonica HOM05D000827 ORTHO05D001576 4.5e-09 65.5 44 75.0
Migut.H01782 Erythranthe guttata HOM05D000827 ORTHO05D001576 5.9e-09 65.1 84 46.4
Migut.M01695 Erythranthe guttata HOM05D000827 ORTHO05D001576 5.9e-09 65.1 174 35.1
vmacro09679 Vaccinium macrocarpon HOM05D000827 ORTHO05D001576 5.9e-09 65.1 168 36.9
CSS0043851 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001576 7.7e-09 64.7 168 37.5
Sed0026310 Sechium edule HOM05D000827 ORTHO05D001576 7.7e-09 64.7 184 35.3
VMungo0540G1308 Vigna mungo HOM05D000827 ORTHO05D001576 7.7e-09 64.7 169 33.7
MSTRG.14465 Avicennia marina HOM05D000827 ORTHO05D001576 1.0e-08 64.3 164 38.4
Peaxi162Scf00235g00814 Petunia axillaris HOM05D000827 ORTHO05D001576 1.0e-08 64.3 97 42.3
Rhsim04G0015800 Rhododendron simsii HOM05D000827 ORTHO05D001576 1.3e-08 63.9 177 36.2
Ah.06g181580 Amaranthus hybridus HOM05D000827 ORTHO05D001576 2.2e-08 63.2 60 48.3
EL10Ac4g07640 Beta vulgaris HOM05D000827 ORTHO05D001576 2.9e-08 62.8 189 29.6
PSO541G3395 Papaver somniferum HOM05D000827 ORTHO05D001576 5.0e-08 62.0 125 39.2
Hund01936 Selenicereus undatus HOM05D000827 ORTHO05D001576 5.0e-08 62.0 170 32.9
ECA248G3303 Erigeron canadensis HOM05D000827 ORTHO05D001576 8.5e-08 61.2 217 29.5
Ca_14775_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001576 1.1e-07 60.8 101 41.6
MSTRG.13005 Avicennia marina HOM05D000827 ORTHO05D001576 1.9e-07 60.1 167 32.9
AUR62024751 Chenopodium quinoa HOM05D000827 ORTHO05D001576 3.2e-07 59.3 70 44.3
Zm00001eb067200 Zea mays HOM05D000827 ORTHO05D001576 3.2e-07 59.3 71 53.5
Zm00001eb220450 Zea mays HOM05D000827 ORTHO05D022146 3.2e-07 59.3 55 61.8
AUR62015922 Chenopodium quinoa HOM05D000827 ORTHO05D001576 7.2e-07 58.2 106 37.7
Hund23170 Selenicereus undatus HOM05D000827 ORTHO05D001576 7.2e-07 58.2 182 31.3
Nitab4.5_0001160g0110 Nicotiana tabacum HOM05D000827 ORTHO05D001576 9.4e-07 57.8 167 38.9
Lj6g0021250 Lotus japonicus HOM05D000827 ORTHO05D001576 1.6e-06 57.0 169 33.1
MSTRG.6970 Avicennia marina HOM05D000827 ORTHO05D001576 2.1e-06 56.6 162 29.6
Sc03g0008170 Simmondsia chinensis HOM05D000827 ORTHO05D001576 2.1e-06 56.6 60 46.7
HanXRQChr16g0516611 Helianthus annuus HOM05D000827 ORTHO05D001576 2.7e-06 56.2 195 34.9
Psat5g172520 Pisum sativum HOM05D000827 ORTHO05D001576 2.7e-06 56.2 178 30.3
Zm00001eb046320 Zea mays HOM05D000827 ORTHO05D022146 2.7e-06 56.2 75 53.3
Lalb_Chr20g0116171 Lupinus albus HOM05D000827 ORTHO05D001576 3.6e-06 55.8 181 34.8
Zm00001eb433030 Zea mays HOM05D000827 ORTHO05D022146 6.1e-06 55.1 103 45.6


User provided reference genes

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