Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 7.6e-248 860.1 461 100.0
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 7.4e-203 710.7 502 78.1
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 5.9e-200 701.0 502 77.1
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 1.3e-199 699.9 502 76.9
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 3.8e-199 698.4 501 76.8
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 5.1e-196 688.0 492 74.8
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 5.1e-196 688.0 496 74.4
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.7e-194 682.9 501 73.9
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.4e-193 679.9 500 75.0
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 9.1e-193 677.2 501 73.3
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 2.9e-191 672.2 501 73.7
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 8.5e-191 670.6 501 73.3
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.6e-189 665.2 503 72.4
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 2.6e-187 659.1 500 72.2
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 2.6e-187 659.1 501 71.7
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 2.6e-187 659.1 501 71.9
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 7.4e-187 657.5 499 72.7
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.2e-186 656.0 502 70.7
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 2.2e-186 656.0 501 72.5
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 8.2e-186 654.1 502 72.1
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 8.2e-186 654.1 491 73.7
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.4e-185 653.3 420 86.7
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 4.1e-185 651.7 491 73.5
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 4.1e-185 651.7 500 71.8
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.2e-184 650.2 505 71.3
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.0e-184 649.4 521 69.1
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 3.5e-184 648.7 503 72.6
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.3e-183 646.7 500 70.6
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.2e-183 646.0 502 71.3
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.9e-183 645.6 504 71.6
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.0e-183 644.8 504 71.6
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 5.0e-183 644.8 499 71.7
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 6.5e-183 644.4 494 72.1
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.5e-183 644.4 531 67.8
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 4.2e-182 641.7 490 72.7
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 5.5e-182 641.3 502 70.9
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 5.5e-182 641.3 501 69.7
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 5.5e-182 641.3 501 70.3
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 9.4e-182 640.6 504 71.4
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.4e-180 636.7 504 70.0
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.8e-180 636.3 493 72.0
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 2.3e-180 636.0 494 71.5
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.0e-180 635.6 504 71.0
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 4.0e-180 635.2 491 70.9
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 3.3e-179 632.1 485 72.6
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.7e-179 631.3 510 69.0
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.5e-179 630.9 504 70.6
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 7.5e-179 630.9 475 73.7
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 2.2e-178 629.4 501 70.3
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 6.3e-178 627.9 501 69.9
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.4e-177 626.7 493 70.8
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.8e-177 626.3 496 70.2
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 3.1e-177 625.5 474 72.2
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 7.0e-177 624.4 502 70.7
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.6e-176 623.2 484 72.9
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 2.2e-175 619.4 502 67.9
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 2.2e-175 619.4 495 68.7
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.9e-175 619.0 493 70.0
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 4.7e-173 611.7 491 70.3
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 6.1e-173 611.3 493 68.0
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 2.3e-172 609.4 525 66.9
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 3.0e-172 609.0 502 69.3
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 2.0e-171 606.3 502 68.7
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 4.8e-170 601.7 508 66.9
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 7.0e-169 597.8 493 66.7
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.0e-168 596.3 471 71.8
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 2.7e-168 595.9 496 68.8
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.7e-167 593.2 496 67.7
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 4.2e-166 588.6 503 66.2
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 2.1e-165 586.3 513 63.9
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 6.1e-165 584.7 501 66.1
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 8.0e-165 584.3 503 68.8
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 2.6e-163 579.3 496 64.9
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 9.8e-163 577.4 486 67.5
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 9.8e-163 577.4 494 65.2
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 2.2e-162 576.2 480 67.5
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 6.3e-162 574.7 506 63.8
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 6.3e-162 574.7 441 71.4
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 4.5e-160 568.5 512 63.9
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 7.7e-160 567.8 500 65.0
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 5.0e-159 565.1 506 62.8
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 8.6e-159 564.3 510 63.3
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.5e-158 562.8 494 63.6
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.3e-158 562.4 514 63.6
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 9.5e-158 560.8 512 63.1
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 1.2e-157 560.5 507 63.9
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 2.8e-157 559.3 512 63.5
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.0e-156 555.4 523 62.7
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 4.0e-156 555.4 513 63.5
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 6.8e-156 554.7 504 61.5
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 6.8e-156 554.7 507 62.5
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 1.2e-155 553.9 512 62.7
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 2.6e-155 552.7 494 62.1
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 3.4e-155 552.4 509 63.9
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 6.4e-154 548.1 505 62.4
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.1e-153 547.4 511 62.0
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 5.6e-150 535.0 501 60.1
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 1.6e-149 533.5 505 61.0
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 2.8e-149 532.7 507 60.9
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 4.7e-149 531.9 505 60.8
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.5e-147 526.9 492 61.0
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.9e-145 520.0 442 68.1
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 4.3e-142 508.8 380 74.5
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 7.3e-142 508.1 535 59.6
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.2e-138 496.5 492 58.5
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 3.1e-132 476.1 480 58.1
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.2e-132 475.3 356 73.9
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.3e-130 470.7 487 58.3
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 2.1e-128 463.4 482 55.4
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 9.9e-123 444.5 501 53.1
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 3.2e-121 439.5 469 56.9
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.6e-115 419.9 451 56.3
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.5e-110 404.1 401 58.6
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 3.6e-109 399.4 393 63.4
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.1e-105 387.9 376 64.1
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 7.9e-104 381.7 445 51.7
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 2.5e-102 376.7 206 91.3
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 7.4e-94 348.6 490 48.6
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.3e-85 321.2 382 52.9
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.3e-85 321.2 382 52.9
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-83 314.3 219 76.3
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 6.1e-80 302.4 425 46.6
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 3.0e-79 300.1 363 50.4
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.1e-78 298.1 325 52.0
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.7e-77 294.3 335 51.6
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 5.7e-70 269.2 344 46.5
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 6.3e-69 265.8 253 65.2
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.2e-66 257.3 221 65.2
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 5.3e-60 236.1 276 54.3
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.7e-53 213.4 381 38.6
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 9.1e-52 208.8 132 83.3
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.5e-50 202.6 164 67.1
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.6e-48 198.0 404 37.4
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.2e-46 191.8 306 39.2
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 9.5e-41 172.2 202 52.5
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 2.1e-40 171.0 256 46.9
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.9e-39 165.6 96 82.3
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.2e-37 161.0 106 67.9
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 7.0e-36 156.0 91 82.4
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 4.0e-31 140.2 87 78.2
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.8e-24 117.5 144 53.5
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 5.2e-23 113.2 185 42.2
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.3e-21 108.6 122 51.6
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.7e-21 108.2 93 58.1
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 2.7e-11 74.3 65 63.1
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 3.9e-10 70.5 65 55.4
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 5.2e-07 60.1 93 34.4
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 2.6e-06 57.8 35 85.7


User provided reference genes

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