Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 0.0e+00 1696.8 932 100.0
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 0.0e+00 1317.0 940 79.7
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 0.0e+00 1222.6 932 70.1
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 0.0e+00 1117.4 956 64.7
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 2.8e-294 1015.4 939 58.9
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 6.1e-289 997.7 942 58.0
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 8.6e-283 977.2 938 63.2
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.5e-282 976.5 938 62.6
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 5.2e-280 968.0 932 57.0
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 2.6e-279 965.7 933 56.3
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 9.8e-279 963.8 931 56.7
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.7e-278 963.0 926 56.2
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 1.7e-278 963.0 935 55.6
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 4.6e-276 954.9 928 56.8
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 3.3e-274 948.7 932 57.1
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 1.6e-273 946.4 938 58.1
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 2.8e-273 945.7 936 54.6
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 4.0e-272 941.8 938 62.2
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 5.2e-272 941.4 943 58.1
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 6.8e-272 941.0 942 61.6
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 1.5e-271 939.9 924 55.7
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 3.4e-271 938.7 940 55.6
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 5.8e-271 937.9 943 54.7
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.3e-270 936.8 923 54.8
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 1.7e-270 936.4 1084 52.7
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 3.7e-270 935.3 929 61.2
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 1.9e-269 932.9 923 55.9
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 2.4e-269 932.6 932 54.6
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 3.2e-269 932.2 937 54.2
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 7.0e-269 931.0 934 54.8
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 6.0e-268 927.9 937 55.0
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.0e-267 927.2 930 54.6
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 1.7e-267 926.4 943 62.0
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 8.6e-267 924.1 930 53.9
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 3.3e-266 922.2 920 54.3
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 1.2e-265 920.2 940 54.7
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.6e-265 919.8 814 59.6
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.6e-265 919.8 921 55.8
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 2.1e-265 919.5 931 54.5
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.1e-264 917.1 932 53.6
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.2e-263 913.7 928 55.3
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.0e-263 912.9 942 60.9
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 2.2e-262 909.4 938 57.1
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.6e-260 903.3 932 53.6
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 5.6e-258 894.8 932 54.1
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 1.5e-255 886.7 932 52.7
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.4e-253 880.2 934 54.5
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 2.4e-253 879.4 942 52.2
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 2.1e-252 876.3 943 52.3
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.2e-249 867.1 941 52.3
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 3.1e-248 862.4 936 51.0
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 3.1e-248 862.4 1003 49.8
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 6.9e-248 861.3 938 51.7
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 1.2e-247 860.5 932 53.4
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 2.0e-247 859.8 929 51.6
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 9.9e-247 857.4 901 55.0
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 6.4e-246 854.7 932 51.4
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.1e-245 854.0 932 51.4
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 2.4e-245 852.8 932 51.1
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 3.2e-245 852.4 937 51.8
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 5.4e-245 851.7 913 52.4
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.8e-240 836.6 930 53.9
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 1.8e-240 836.6 933 54.1
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 2.0e-239 833.2 939 49.1
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 2.6e-239 832.8 959 53.6
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 3.4e-239 832.4 928 51.8
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 2.9e-238 829.3 937 50.5
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 5.4e-237 825.1 933 53.4
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.5e-236 822.4 934 51.0
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 3.3e-234 815.8 939 51.0
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 2.8e-233 812.8 930 51.3
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 6.2e-233 811.6 932 51.2
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 5.3e-232 808.5 939 50.6
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 1.3e-230 803.9 924 50.0
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 1.9e-229 800.0 931 50.6
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 3.2e-229 799.3 916 50.3
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 9.3e-229 797.7 730 58.6
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.8e-227 793.5 923 51.1
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 2.6e-223 779.6 923 51.4
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 3.0e-219 766.1 942 53.6
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 2.2e-217 760.0 687 58.8
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 6.1e-212 741.9 642 61.8
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 1.7e-209 733.8 757 55.0
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-207 727.6 714 56.3
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 7.7e-207 724.9 931 46.3
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.2e-204 717.6 1174 39.6
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 3.6e-204 716.1 930 47.1
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 9.1e-200 701.4 721 60.2
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 6.7e-195 685.3 932 46.6
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 4.1e-192 676.0 926 45.1
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 3.5e-191 672.9 854 48.7
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 2.5e-189 666.8 917 46.3
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 2.1e-188 663.7 766 49.2
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 4.7e-188 662.5 688 56.5
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.1e-176 624.8 909 44.7
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 2.3e-174 617.1 495 64.4
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 7.0e-160 568.9 932 39.9
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.3e-158 563.9 553 55.7
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 5.2e-155 552.7 967 40.2
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.6e-146 523.9 444 59.7
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 2.9e-137 493.8 920 37.8
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 4.3e-133 479.9 485 53.0
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 3.1e-131 473.8 931 39.6
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.5e-127 460.3 486 53.5
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 5.3e-123 446.4 487 53.0
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 1.9e-117 427.9 481 53.0
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 6.9e-115 419.5 416 54.1
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.2e-114 418.7 469 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 4.6e-111 406.8 482 46.7
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 7.2e-96 356.3 471 46.7
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 7.4e-93 346.3 481 46.8
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 1.5e-90 338.6 397 50.1
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 2.9e-89 334.3 487 42.5
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 2.5e-88 331.3 397 48.9
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.6e-87 328.6 423 48.0
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 1.6e-87 328.6 368 50.8
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.4e-83 314.7 193 77.7
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.4e-83 314.7 193 77.7
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 1.9e-80 305.1 526 35.9
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 5.2e-78 297.0 1097 26.0
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 2.9e-73 281.2 338 48.8
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.8e-68 264.6 249 59.0
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 4.1e-67 260.8 331 46.8
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.7e-65 255.4 250 52.4
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 4.2e-64 250.8 230 61.3
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 5.5e-64 250.4 182 70.3
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 4.0e-62 244.2 620 30.5
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 1.2e-53 216.1 388 50.5
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.6e-53 214.9 466 33.7
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 2.6e-53 214.9 615 30.4
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.6e-50 205.7 223 50.2
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.3e-49 201.8 189 54.0
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 8.6e-49 199.9 335 42.4
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 3.4e-45 188.0 302 40.1
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.0e-42 177.2 107 77.6
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.0e-41 176.4 137 58.4
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.1e-39 168.7 248 46.4
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 6.2e-39 167.2 459 27.9
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.7e-36 159.1 177 47.5
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.7e-36 159.1 177 47.5
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 3.5e-34 151.4 170 50.6
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.0e-33 149.8 170 50.0
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 6.8e-30 137.1 152 52.0
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 1.3e-28 132.9 192 44.8
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-24 119.8 109 56.9
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 9.6e-24 116.7 78 78.2
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 3.4e-21 108.2 79 67.1
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 5.8e-21 107.5 667 24.3
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 3.8e-20 104.8 76 65.8
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-20 104.0 187 35.8
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 2.3e-17 95.5 75 56.0
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 1.6e-15 89.4 130 42.3
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.1e-14 86.7 197 34.0
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.1e-14 86.7 156 37.2
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.1e-14 86.7 202 34.2
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 7.1e-11 73.9 167 34.1
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 1.2e-10 73.2 45 80.0
C06p19910 Brassica napus HOM05D016195 ORTHO05D033444 2.8e-07 62.0 51 54.9
QL05p081774 Quercus lobata HOM05D004183 ORTHO05D005022 4.0e-06 58.2 74 48.6
BolC8t52359H Brassica oleracea HOM05D016195 ORTHO05D033444 9.0e-06 57.0 39 64.1


User provided reference genes

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