Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 8.6e-117 423.7 220 100.0
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 1.5e-89 333.2 205 82.0
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 2.6e-89 332.4 225 79.1
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 1.1e-84 317.0 204 78.4
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 1.5e-84 316.6 204 79.4
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 9.6e-84 313.9 205 76.1
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.3e-83 313.5 206 76.7
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 1.6e-83 313.2 203 79.3
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 2.1e-83 312.8 198 79.3
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 3.7e-83 312.0 194 80.4
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 3.7e-83 312.0 204 76.5
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 3.7e-83 312.0 193 82.9
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 4.8e-83 311.6 193 81.9
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 6.2e-83 311.2 204 77.5
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 6.2e-83 311.2 204 77.0
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 1.4e-82 310.1 193 82.4
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 1.8e-82 309.7 206 75.7
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 1.8e-82 309.7 206 76.2
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 6.9e-82 307.8 205 75.6
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 1.2e-81 307.0 202 76.7
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 1.2e-81 307.0 198 77.8
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 2.6e-81 305.8 202 76.2
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 7.6e-81 304.3 195 82.1
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 1.0e-80 303.9 206 75.7
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 1.7e-80 303.1 204 76.5
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.7e-80 303.1 206 74.3
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 2.2e-80 302.8 205 74.1
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 2.9e-80 302.4 205 73.2
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 4.9e-80 301.6 204 76.0
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 8.4e-80 300.8 205 72.2
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 1.9e-79 299.7 204 75.0
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 4.2e-79 298.5 204 75.5
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 7.1e-79 297.7 205 71.7
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 9.3e-79 297.4 205 71.7
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 1.2e-78 297.0 167 89.8
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 1.6e-78 296.6 195 77.4
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 2.1e-78 296.2 199 73.9
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 2.1e-78 296.2 194 77.3
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 4.6e-78 295.0 202 74.3
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 7.9e-78 294.3 232 68.5
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 1.0e-77 293.9 167 89.8
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 1.0e-77 293.9 204 73.5
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 1.8e-77 293.1 202 73.3
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 2.3e-77 292.7 205 73.2
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 3.0e-77 292.4 212 71.2
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 5.1e-77 291.6 207 71.5
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 5.1e-77 291.6 200 73.0
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 1.9e-76 289.7 194 74.7
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 1.6e-75 286.6 195 75.4
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 2.1e-75 286.2 193 72.5
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 3.7e-75 285.4 193 73.1
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 6.3e-75 284.6 193 73.1
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 1.4e-74 283.5 193 73.1
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 1.8e-74 283.1 193 73.1
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 4.1e-74 282.0 205 70.7
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 5.3e-74 281.6 193 72.5
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 1.2e-73 280.4 200 69.0
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 1.2e-73 280.4 195 73.8
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 1.5e-73 280.0 198 72.2
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 1.5e-73 280.0 194 74.2
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 2.0e-73 279.6 202 69.3
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 2.6e-73 279.3 193 72.0
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 2.6e-73 279.3 210 70.0
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 4.5e-73 278.5 194 73.7
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 1.7e-72 276.6 183 76.5
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 2.9e-72 275.8 204 71.1
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 3.8e-72 275.4 194 71.6
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 8.5e-72 274.2 202 68.8
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 2.5e-71 272.7 167 82.6
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 3.2e-71 272.3 200 72.5
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 2.1e-70 269.6 198 71.2
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 7.9e-70 267.7 203 70.0
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 7.9e-70 267.7 203 70.0
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 7.9e-70 267.7 214 63.1
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 2.3e-69 266.2 195 69.2
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 1.1e-68 263.8 193 67.4
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 1.5e-68 263.5 171 78.4
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 1.3e-67 260.4 179 73.7
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 2.2e-67 259.6 200 68.5
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 1.8e-66 256.5 155 83.2
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 2.4e-66 256.1 167 75.4
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 5.5e-63 245.0 193 65.3
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 9.4e-63 244.2 207 63.8
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 3.7e-59 232.3 132 89.4
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 4.1e-58 228.8 203 57.1
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 1.5e-57 226.9 201 60.7
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 9.4e-55 217.6 138 75.4
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 9.7e-52 207.6 141 71.6
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 2.6e-49 199.5 139 76.3
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 9.4e-47 191.0 200 56.0
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 2.8e-43 179.5 122 76.2
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 8.2e-43 177.9 122 76.2
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.2e-41 174.1 136 65.4
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 2.3e-29 133.3 95 74.7
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 9.8e-28 127.9 80 83.8
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 9.8e-28 127.9 80 83.8
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 9.5e-23 111.3 197 37.6
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 2.8e-22 109.8 61 86.9
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 1.3e-19 100.9 59 81.4
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 1.2e-14 84.3 73 49.3
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 1.4e-13 80.9 157 37.6
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 4.0e-13 79.3 148 39.2
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 3.4e-12 76.3 55 69.1
CDE04G2918 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 1.2e-06 57.8 43 58.1
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.6e-06 57.4 42 66.7


User provided reference genes

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