Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 0.0e+00 1879.0 974 100.0
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 0.0e+00 1570.8 940 88.2
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 3.4e-306 1055.0 1072 57.7
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 3.2e-304 1048.5 1075 58.3
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 1.6e-292 1009.6 1109 55.7
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 9.9e-290 1000.3 1051 56.0
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 3.0e-286 988.8 915 63.3
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 5.1e-278 961.4 930 59.2
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 6.7e-254 881.3 1051 52.1
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 5.5e-216 755.4 1087 45.8
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 5.2e-214 748.8 1087 44.0
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 7.5e-213 745.0 1078 46.0
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 9.8e-213 744.6 1063 46.0
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 2.3e-209 733.4 892 51.3
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 2.0e-205 720.3 998 46.8
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 1.6e-194 684.1 1079 42.7
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 4.6e-194 682.6 1048 43.7
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 3.9e-193 679.5 870 50.6
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 1.1e-192 677.9 876 49.4
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 1.5e-192 677.6 736 54.5
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 6.2e-191 672.2 1065 44.2
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 6.8e-190 668.7 908 47.4
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 2.0e-189 667.2 1044 43.2
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 1.9e-187 660.6 1057 43.6
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 3.2e-187 659.8 957 44.9
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.6e-186 657.5 1041 42.6
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 1.5e-184 651.0 1045 43.1
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 4.3e-184 649.4 940 46.0
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 1.1e-182 644.8 888 46.7
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.9e-179 634.0 880 46.4
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 5.4e-179 632.5 895 48.0
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 7.1e-179 632.1 932 45.6
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 9.2e-179 631.7 939 45.0
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.7e-177 627.5 868 46.1
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 3.9e-177 626.3 892 47.8
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 8.6e-177 625.2 871 46.0
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 1.5e-176 624.4 910 45.5
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.6e-175 620.9 887 45.8
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 8.1e-175 618.6 905 45.1
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.1e-174 618.2 870 45.9
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 8.9e-174 615.1 870 45.6
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 1.2e-173 614.8 929 46.6
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.0e-173 614.0 870 45.4
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.6e-173 613.6 870 45.4
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 7.6e-173 612.1 870 45.3
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 1.4e-171 607.8 1056 41.9
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 3.2e-171 606.7 940 43.6
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 4.2e-171 606.3 1070 40.1
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 1.6e-170 604.4 888 45.9
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 1.7e-169 600.9 1058 41.1
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 5.6e-168 595.9 918 44.6
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 6.2e-167 592.4 948 42.9
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 3.1e-166 590.1 890 44.7
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 1.2e-165 588.2 1057 41.7
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 1.3e-164 584.7 850 45.1
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.9e-164 583.6 1019 40.7
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 3.8e-164 583.2 1053 40.6
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 6.4e-164 582.4 995 40.9
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 4.2e-163 579.7 1047 39.4
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 2.7e-162 577.0 941 42.4
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 2.7e-162 577.0 858 43.7
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 8.7e-161 572.0 1053 40.4
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 9.6e-160 568.5 1055 38.1
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 1.3e-159 568.2 867 44.3
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 6.9e-158 562.4 1069 38.7
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 9.0e-158 562.0 918 44.2
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 5.8e-157 559.3 917 42.6
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 2.9e-156 557.0 909 42.8
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 6.4e-156 555.8 924 42.4
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 1.4e-155 554.7 922 41.2
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 4.2e-155 553.1 914 42.9
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 5.4e-155 552.7 1054 37.6
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 3.5e-154 550.1 926 42.0
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 1.0e-153 548.5 906 42.3
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 1.3e-153 548.1 924 41.7
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 6.7e-153 545.8 986 39.5
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 2.5e-152 543.9 907 41.9
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 7.4e-152 542.3 1058 39.2
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 1.6e-151 541.2 917 42.9
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 1.8e-150 537.7 986 39.4
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 2.4e-150 537.3 1048 38.6
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 5.3e-150 536.2 871 41.7
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 2.0e-149 534.3 941 40.6
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 2.0e-149 534.3 945 41.1
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 2.6e-149 533.9 1012 38.9
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 7.6e-149 532.3 877 45.2
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 1.7e-148 531.2 1028 38.5
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 8.4e-148 528.9 1017 40.3
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 1.1e-144 518.5 1033 39.9
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 1.3e-143 515.0 925 41.8
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 6.2e-143 512.7 1037 38.6
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 6.9e-142 509.2 1028 38.5
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 1.7e-140 504.6 1054 37.7
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.7e-140 504.6 788 43.4
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 8.4e-140 502.3 1026 37.6
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 5.5e-139 499.6 946 38.7
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 9.3e-139 498.8 1037 37.5
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 9.3e-139 498.8 870 40.7
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.3e-137 495.0 788 42.6
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.8e-135 487.3 661 47.7
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 5.5e-131 473.0 933 39.5
Hma1.2p1_0627F.1_g191700 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.4e-126 458.4 829 39.0
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 2.2e-124 451.1 877 41.0
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 3.8e-124 450.3 1054 36.6
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 5.7e-120 436.4 921 38.1
Oeu015220.3 Olea europaea HOM05D003611 ORTHO05D004281 9.1e-118 429.1 748 41.0
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 1.7e-116 424.9 892 39.5
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 3.8e-116 423.7 910 38.0
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 1.3e-111 408.7 844 38.4
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 1.4e-110 405.2 529 47.6
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 2.7e-109 401.0 874 38.3
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 1.3e-108 398.7 890 37.4
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 2.9e-108 397.5 932 36.3
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 3.8e-108 397.1 754 39.9
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 1.1e-107 395.6 1016 34.9
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 1.0e-105 389.0 922 36.1
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 3.4e-104 384.0 892 37.0
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 4.5e-101 373.6 893 36.5
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 1.7e-100 371.7 910 36.3
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 4.2e-99 367.1 895 35.8
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 5.5e-99 366.7 898 37.0
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 1.2e-98 365.5 899 36.9
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 2.3e-97 361.3 536 45.1
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 4.4e-96 357.1 898 36.6
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 1.0e-92 345.9 897 35.5
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 1.7e-92 345.1 897 35.7
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 2.5e-91 341.3 919 34.2
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 1.0e-89 335.9 923 34.7
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 1.0e-89 335.9 980 33.9
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 3.0e-89 334.3 901 35.6
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 6.8e-89 333.2 901 35.6
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 6.8e-89 333.2 901 35.6
TAR374G1053 Trochodendron aralioides HOM05D003611 ORTHO05D004281 6.8e-89 333.2 642 40.7
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 4.9e-87 327.0 1006 32.7
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 2.7e-85 321.2 954 34.4
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.2e-82 312.4 953 33.9
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 3.4e-80 304.3 865 32.4
Actinidia02823 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.1e-78 299.3 359 50.7
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 2.3e-76 291.6 831 34.2
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 4.3e-75 287.3 508 42.3
Zm00001eb374330 Zea mays HOM05D003611 ORTHO05D004281 3.4e-72 277.7 843 32.5
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 3.7e-71 274.2 866 31.6
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 1.1e-65 256.1 582 37.3
Lalb_Chr04g0259231 Lupinus albus HOM05D003611 ORTHO05D004281 5.4e-62 243.8 638 34.2
Lalb_Chr04g0259211 Lupinus albus HOM05D003611 ORTHO05D004281 4.0e-57 227.6 234 56.4
Hma1.2p1_0623F.1_g191000 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 2.0e-48 198.7 192 64.1
SalBow3G3040 Salvia bowleyana HOM05D003611 ORTHO05D004281 4.6e-45 187.6 394 35.3
Hma1.2p1_2961F.1_g330880 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 2.5e-43 181.8 269 50.2
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 2.8e-42 178.3 929 28.7
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 1.2e-40 172.9 641 27.6
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 1.7e-39 169.1 560 29.8
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 4.6e-37 161.0 492 31.5
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.9e-35 155.6 317 38.8
unitig_22.g6726 Utricularia gibba HOM05D003611 ORTHO05D004281 4.5e-32 144.4 191 46.1
unitig_22.g6727 Utricularia gibba HOM05D003611 ORTHO05D004281 1.0e-31 143.3 695 28.3
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 1.3e-28 132.9 873 26.1
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 7.4e-27 127.1 255 36.5
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 1.5e-24 119.4 269 35.3
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 4.5e-24 117.9 858 24.6
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 5.0e-23 114.4 263 34.6
Mapoly0012s0024 Marchantia polymorpha HOM05D003611 ORTHO05D021332 3.6e-21 108.2 972 24.8
Pp3c19_15630 Physcomitrium patens HOM05D025697 ORTHO05D004281 3.6e-21 108.2 763 25.4
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 3.9e-20 104.8 276 34.1
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 1.5e-19 102.8 277 33.9
SEGI_14695 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 1.9e-19 102.4 363 30.6
Oeu054339.1 Olea europaea HOM05D003611 ORTHO05D004281 7.4e-19 100.5 136 45.6
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.1e-17 96.7 287 33.4
ATR0661G048 Amborella trichopoda HOM05D003611 ORTHO05D004281 6.9e-17 94.0 261 34.5
Pp3c18_8750 Physcomitrium patens HOM05D025697 ORTHO05D004281 1.5e-16 92.8 676 25.9
Ciclev10006595m.g Citrus clementina HOM05D003611 ORTHO05D004281 7.7e-16 90.5 314 29.6
Rhsim03G0191400 Rhododendron simsii HOM05D003611 ORTHO05D038142 9.4e-14 83.6 238 32.8
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 2.7e-13 82.0 272 31.2
Hund11716 Selenicereus undatus HOM05D003611 ORTHO05D026482 1.5e-11 76.3 335 29.6
AUR62021117 Chenopodium quinoa HOM05D034504 ORTHO05D026482 5.7e-11 74.3 187 32.1
SEGI_21460 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 1.3e-10 73.2 317 28.4
AUR62031425 Chenopodium quinoa HOM05D034504 ORTHO05D026482 2.8e-10 72.0 220 30.9
Thecc.01G383400 Theobroma cacao HOM05D003611 ORTHO05D004281 3.1e-09 68.6 105 41.9
Actinidia02822 Actinidia chinensis HOM05D003611 ORTHO05D004281 6.9e-09 67.4 236 28.4
Thecc.01G383600 Theobroma cacao HOM05D003611 ORTHO05D004281 2.6e-08 65.5 105 41.0
MD01G1208800 Malus domestica HOM05D010729 ORTHO05D011897 3.4e-08 65.1 307 28.0
Potri.004G073400 Populus trichocarpa HOM05D003611 ORTHO05D004281 4.5e-08 64.7 309 29.1
Sabra04G0048100 Salix brachista HOM05D003611 ORTHO05D011897 5.9e-08 64.3 308 27.6
BcaC03g16054 Brassica carinata HOM05D003611 ORTHO05D004281 1.3e-07 63.2 71 52.1
RcHm_v2.0_Chr1g0378421 Rosa chinensis HOM05D010729 ORTHO05D011897 2.9e-07 62.0 233 30.5
HPP92_002605 Vanilla planifolia HOM05D046274 ORTHO05D004281 5.0e-07 61.2 170 32.4
TAR374G0905 Trochodendron aralioides HOM05D003611 ORTHO05D004281 8.5e-07 60.5 72 41.7


User provided reference genes

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