Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.8e-123 444.9 229 100.0
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.7e-57 226.1 127 87.4
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.7e-57 226.1 134 84.3
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 6.1e-57 224.9 128 85.9
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.2e-54 216.5 126 85.7
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 3.7e-54 215.7 127 78.7
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 4.8e-54 215.3 127 83.5
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 4.8e-54 215.3 126 84.1
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 4.8e-54 215.3 127 84.3
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 4.8e-54 215.3 127 84.3
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 8.3e-54 214.5 127 82.7
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 8.3e-54 214.5 127 83.5
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 8.3e-54 214.5 129 83.7
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 8.3e-54 214.5 127 84.3
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.1e-53 214.2 126 83.3
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 1.1e-53 214.2 127 85.0
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.4e-53 213.8 128 84.4
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 1.8e-53 213.4 127 83.5
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 4.1e-53 212.2 127 82.7
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.1e-53 212.2 127 82.7
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 7.0e-53 211.5 127 80.3
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 9.1e-53 211.1 128 82.0
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 1.6e-52 210.3 126 84.9
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.6e-52 210.3 127 78.7
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 1.6e-52 210.3 124 85.5
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 2.0e-52 209.9 127 83.5
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.0e-52 209.9 126 81.7
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 2.7e-52 209.5 127 81.1
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 3.5e-52 209.1 126 84.1
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 4.5e-52 208.8 127 84.3
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 4.5e-52 208.8 127 82.7
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 1.0e-51 207.6 127 81.1
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 1.0e-51 207.6 127 80.3
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 1.3e-51 207.2 124 83.9
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 1.3e-51 207.2 127 81.9
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 1.7e-51 206.8 127 81.9
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 2.3e-51 206.5 124 82.3
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 2.3e-51 206.5 124 83.1
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 5.0e-51 205.3 127 83.5
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 5.0e-51 205.3 114 88.6
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 6.6e-51 204.9 127 82.7
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 6.6e-51 204.9 124 83.1
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 6.6e-51 204.9 128 80.5
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 6.6e-51 204.9 143 74.1
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 1.1e-50 204.1 124 83.9
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 1.5e-50 203.8 124 83.9
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 1.5e-50 203.8 127 81.9
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 1.9e-50 203.4 127 80.3
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 2.5e-50 203.0 124 84.7
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 2.5e-50 203.0 125 83.2
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 3.3e-50 202.6 124 81.5
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 4.2e-50 202.2 127 81.1
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 4.2e-50 202.2 145 73.1
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 5.5e-50 201.8 124 81.5
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 7.2e-50 201.4 127 81.9
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 9.5e-50 201.1 132 76.5
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 1.2e-49 200.7 127 78.7
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.2e-49 200.7 128 78.1
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.6e-49 200.3 127 74.8
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 2.1e-49 199.9 127 81.1
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 2.1e-49 199.9 127 78.7
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 3.6e-49 199.1 128 79.7
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 3.6e-49 199.1 127 78.7
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 6.1e-49 198.4 128 80.5
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.0e-48 197.6 127 78.0
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 1.0e-48 197.6 127 79.5
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 2.3e-48 196.4 127 79.5
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 2.3e-48 196.4 127 78.0
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 3.0e-48 196.1 127 77.2
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 3.0e-48 196.1 116 81.0
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.2e-48 195.3 127 78.0
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 6.8e-48 194.9 125 79.2
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 6.8e-48 194.9 127 81.1
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.2e-47 194.1 127 77.2
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 1.5e-47 193.7 126 78.6
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.5e-47 193.7 127 78.0
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 3.4e-47 192.6 127 78.7
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 3.4e-47 192.6 127 78.7
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 3.4e-47 192.6 127 77.2
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 3.4e-47 192.6 126 77.8
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 4.4e-47 192.2 127 78.7
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 4.4e-47 192.2 127 78.0
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 4.4e-47 192.2 127 78.0
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 4.4e-47 192.2 132 75.8
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 4.4e-47 192.2 127 78.7
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 5.7e-47 191.8 127 77.2
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 9.8e-47 191.0 127 78.7
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 9.8e-47 191.0 127 78.7
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.3e-46 190.7 126 77.8
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 1.7e-46 190.3 128 76.6
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 1.7e-46 190.3 116 83.6
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 2.2e-46 189.9 127 75.6
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 3.7e-46 189.1 127 76.4
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 3.7e-46 189.1 127 76.4
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 3.7e-46 189.1 127 76.4
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.3e-46 188.3 127 74.8
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 8.3e-46 188.0 124 76.6
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 8.3e-46 188.0 126 77.0
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 1.1e-45 187.6 127 77.2
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 1.1e-45 187.6 127 78.0
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 1.1e-45 187.6 124 77.4
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 1.8e-45 186.8 133 75.2
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 2.4e-45 186.4 127 76.4
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 3.2e-45 186.0 127 74.0
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 3.2e-45 186.0 128 74.2
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 7.0e-45 184.9 127 75.6
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 1.2e-44 184.1 129 76.0
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.6e-44 183.7 127 75.6
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 3.5e-44 182.6 127 74.0
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 7.8e-44 181.4 127 74.8
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.3e-43 180.6 128 75.0
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 1.7e-43 180.3 124 75.8
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.3e-43 179.9 124 73.4
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 1.1e-42 177.6 126 73.8
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 3.3e-42 176.0 93 93.5
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 5.6e-42 175.3 103 87.4
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 9.5e-42 174.5 129 72.1
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 1.2e-41 174.1 125 74.4
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 2.1e-41 173.3 124 71.8
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 1.0e-40 171.0 101 86.1
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 1.8e-40 170.2 101 86.1
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 4.4e-39 165.6 129 70.5
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.7e-38 163.7 98 83.7
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 1.1e-37 161.0 77 90.9
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 2.4e-37 159.8 108 71.3
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 5.4e-37 158.7 111 74.8
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 1.7e-35 153.7 77 87.0
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 1.7e-35 153.7 121 68.6
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 3.0e-35 152.9 124 59.7
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 3.9e-35 152.5 77 89.6
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 1.9e-34 150.2 102 68.6
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 1.5e-31 140.6 76 82.9
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 9.8e-31 137.9 67 91.0
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 5.4e-29 132.1 76 73.7
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 1.6e-28 130.6 74 75.7
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 4.3e-26 122.5 72 73.6
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.1e-21 107.8 49 93.9
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 4.1e-21 105.9 48 95.8
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 4.1e-21 105.9 48 93.8
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 4.1e-21 105.9 48 95.8
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 9.2e-21 104.8 67 67.2
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 1.2e-20 104.4 48 93.8
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 3.5e-20 102.8 48 91.7
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 3.5e-20 102.8 48 91.7
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 8.9e-16 88.2 43 88.4
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 4.4e-15 85.9 43 86.0
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 2.9e-14 83.2 48 64.6
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 9.3e-13 78.2 68 52.9
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 6.0e-12 75.5 61 65.6
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.7e-11 73.9 61 77.0
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 4.3e-10 69.3 74 50.0
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 2.9e-06 56.6 25 96.0
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.9e-06 56.6 25 96.0


User provided reference genes

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