Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia09327 Actinidia chinensis HOM05D007273 ORTHO05D009230 2.5e-62 241.9 117 100.0
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 1.4e-36 156.4 147 59.9
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 1.2e-21 106.7 148 45.9
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 9.8e-19 97.1 156 39.1
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.3e-18 96.7 147 43.5
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 3.7e-18 95.1 125 46.4
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 2.1e-16 89.4 131 45.8
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 6.0e-16 87.8 129 40.3
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 1.0e-15 87.0 124 43.5
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 5.1e-15 84.7 131 38.2
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 5.1e-15 84.7 139 38.1
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 5.1e-15 84.7 135 43.0
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 8.6e-15 84.0 122 41.8
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.5e-14 82.4 73 58.9
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 7.3e-14 80.9 127 37.8
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 1.6e-13 79.7 147 36.1
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 1.6e-13 79.7 127 37.0
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 2.1e-13 79.3 127 37.0
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 6.2e-13 77.8 116 39.7
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 8.1e-13 77.4 126 38.1
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 1.1e-12 77.0 118 38.1
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 1.8e-12 76.3 116 38.8
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 2.3e-12 75.9 122 41.0
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 2.3e-12 75.9 145 37.9
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 4.0e-12 75.1 60 63.3
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 6.8e-12 74.3 122 36.1
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 8.9e-12 73.9 131 35.9
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 8.9e-12 73.9 137 36.5
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 1.2e-11 73.6 139 35.3
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 7.5e-11 70.9 66 54.5
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 1.3e-10 70.1 109 39.4
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 2.2e-10 69.3 79 44.3
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 2.9e-10 68.9 112 40.2
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 2.9e-10 68.9 143 33.6
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 6.4e-10 67.8 131 34.4
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 8.3e-10 67.4 94 46.8
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 1.1e-09 67.0 110 38.2
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 1.1e-09 67.0 109 37.6
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 2.4e-09 65.9 122 39.3
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 3.2e-09 65.5 133 36.1
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 3.2e-09 65.5 135 37.0
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 4.1e-09 65.1 119 37.8
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 4.1e-09 65.1 106 38.7
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 4.1e-09 65.1 109 34.9
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 5.4e-09 64.7 150 33.3
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 7.1e-09 64.3 118 33.9
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 7.1e-09 64.3 114 36.8
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 9.2e-09 63.9 88 46.6
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 1.2e-08 63.5 119 34.5
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 1.6e-08 63.2 119 37.8
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 1.6e-08 63.2 97 38.1
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 1.6e-08 63.2 106 36.8
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 1.6e-08 63.2 84 45.2
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 2.1e-08 62.8 100 38.0
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 2.7e-08 62.4 105 41.9
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 6.0e-08 61.2 92 38.0
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 6.0e-08 61.2 104 35.6
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 7.8e-08 60.8 108 36.1
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 7.8e-08 60.8 104 35.6
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 1.0e-07 60.5 108 36.1
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 1.3e-07 60.1 108 34.3
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.3e-07 60.1 104 35.6
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 1.7e-07 59.7 99 37.4
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 2.3e-07 59.3 108 36.1
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 2.3e-07 59.3 92 37.0
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 2.3e-07 59.3 92 37.0
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 2.3e-07 59.3 137 29.9
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 3.0e-07 58.9 105 35.2
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 3.0e-07 58.9 105 35.2
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 5.1e-07 58.2 92 35.9
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 5.1e-07 58.2 79 45.6
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 6.6e-07 57.8 118 33.1
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 6.6e-07 57.8 75 40.0
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 6.6e-07 57.8 76 42.1
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 8.6e-07 57.4 103 36.9
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 8.6e-07 57.4 79 44.3
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 1.5e-06 56.6 119 31.9
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 1.5e-06 56.6 131 34.4
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 1.9e-06 56.2 65 44.6
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 2.5e-06 55.8 52 55.8
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 2.5e-06 55.8 71 39.4
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 4.3e-06 55.1 90 40.0
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 7.3e-06 54.3 84 42.9


User provided reference genes

Program Settings