Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 2.5e-34 148.3 78 100.0
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 8.5e-27 123.2 68 94.1
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 4.2e-26 120.9 76 76.3
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 2.1e-25 118.6 76 78.9
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 3.6e-25 117.9 69 84.1
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 5.2e-24 114.0 76 73.7
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 6.8e-24 113.6 74 79.7
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 1.2e-23 112.8 76 69.7
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 2.6e-23 111.7 69 79.7
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 2.6e-23 111.7 69 79.7
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 2.6e-23 111.7 69 79.7
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 4.4e-23 110.9 74 74.3
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 4.4e-23 110.9 76 73.7
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 9.8e-23 109.8 69 78.3
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 9.8e-23 109.8 76 68.4
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.7e-22 109.0 69 76.8
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 2.2e-22 108.6 76 68.4
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 2.2e-22 108.6 76 69.7
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 2.2e-22 108.6 76 68.4
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 2.2e-22 108.6 76 73.7
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 2.8e-22 108.2 76 71.1
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 2.8e-22 108.2 75 70.7
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 3.7e-22 107.8 69 75.4
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.9e-22 107.5 75 70.7
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.9e-22 107.5 75 70.7
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 6.3e-22 107.1 75 70.7
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 6.3e-22 107.1 69 73.9
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 8.3e-22 106.7 69 72.5
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 8.3e-22 106.7 75 69.3
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 1.4e-21 105.9 75 68.0
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 1.8e-21 105.5 69 72.5
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 3.1e-21 104.8 67 74.6
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 5.4e-21 104.0 74 68.9
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 5.4e-21 104.0 76 65.8
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 7.0e-21 103.6 69 69.6
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 7.0e-21 103.6 75 68.0
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 7.0e-21 103.6 69 69.6
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 7.0e-21 103.6 69 69.6
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 1.2e-20 102.8 69 72.5
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 1.6e-20 102.4 75 66.7
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.6e-20 102.4 75 68.0
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.0e-20 102.1 76 68.4
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 2.7e-20 101.7 67 71.6
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.5e-20 101.3 75 65.3
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 3.5e-20 101.3 69 69.6
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 3.5e-20 101.3 74 66.2
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.5e-20 100.9 75 66.7
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 4.5e-20 100.9 76 65.8
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 5.9e-20 100.5 72 68.1
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 5.9e-20 100.5 75 66.7
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 7.7e-20 100.1 75 64.0
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 7.7e-20 100.1 74 64.9
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 7.7e-20 100.1 74 64.9
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 7.7e-20 100.1 75 66.7
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 7.7e-20 100.1 70 70.0
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 7.7e-20 100.1 75 66.7
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 7.7e-20 100.1 74 66.2
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 7.7e-20 100.1 66 69.7
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.0e-19 99.8 69 71.0
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 1.0e-19 99.8 67 73.1
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 1.0e-19 99.8 67 70.1
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.7e-19 99.0 69 69.6
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 1.7e-19 99.0 73 71.2
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 1.7e-19 99.0 69 69.6
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 2.3e-19 98.6 74 62.2
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 2.3e-19 98.6 73 65.8
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 2.9e-19 98.2 69 68.1
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 3.8e-19 97.8 69 69.6
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 6.6e-19 97.1 76 65.8
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 8.6e-19 96.7 69 59.4
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 1.5e-18 95.9 69 68.1
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.5e-18 95.9 76 59.2
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.5e-18 95.9 67 67.2
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.9e-18 95.5 74 60.8
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.5e-18 95.1 74 60.8
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 2.5e-18 95.1 76 61.8
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 3.3e-18 94.7 69 65.2
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 4.2e-18 94.4 75 64.0
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 4.2e-18 94.4 67 65.7
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 7.2e-18 93.6 69 65.2
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 9.5e-18 93.2 75 61.3
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 9.5e-18 93.2 69 59.4
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 9.5e-18 93.2 74 67.6
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 1.6e-17 92.4 67 67.2
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 1.6e-17 92.4 69 66.7
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 2.1e-17 92.0 69 62.3
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.1e-17 92.0 74 59.5
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 2.1e-17 92.0 67 59.7
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 2.8e-17 91.7 74 60.8
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 3.6e-17 91.3 73 61.6
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 6.1e-17 90.5 69 59.4
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 8.0e-17 90.1 69 65.2
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 8.0e-17 90.1 75 60.0
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 1.4e-16 89.4 73 61.6
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 1.4e-16 89.4 73 61.6
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.3e-16 88.6 72 59.7
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 2.3e-16 88.6 76 57.9
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 6.8e-16 87.0 76 57.9
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 7.5e-15 83.6 66 60.6
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 6.3e-14 80.5 63 61.9
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 8.3e-14 80.1 63 61.9
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 8.3e-14 80.1 53 71.7
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.1e-13 79.7 73 50.7
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 1.4e-13 79.3 63 58.7
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 2.4e-13 78.6 62 61.3
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 2.4e-13 78.6 63 57.1
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 2.4e-13 78.6 63 57.1
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 7.0e-13 77.0 63 58.7
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 9.2e-13 76.6 65 56.9
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 1.2e-12 76.3 63 58.7
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 1.6e-12 75.9 63 57.1
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 2.7e-12 75.1 67 52.2
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 2.7e-12 75.1 63 55.6
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 3.5e-12 74.7 63 55.6
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 3.5e-12 74.7 76 48.7
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 5.9e-12 73.9 63 54.0
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 5.9e-12 73.9 63 55.6
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 5.9e-12 73.9 63 55.6
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 5.9e-12 73.9 63 54.0
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 5.9e-12 73.9 63 55.6
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 5.9e-12 73.9 67 55.2
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 5.9e-12 73.9 75 45.3
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 7.8e-12 73.6 63 55.6
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-11 73.2 63 55.6
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 1.3e-11 72.8 63 54.0
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 1.7e-11 72.4 63 54.0
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 1.7e-11 72.4 63 54.0
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.7e-11 72.4 73 46.6
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 2.3e-11 72.0 63 54.0
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 2.9e-11 71.6 59 59.3
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 3.9e-11 71.2 63 54.0
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 5.0e-11 70.9 54 61.1
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 6.6e-11 70.5 63 52.4
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 1.1e-10 69.7 45 75.6
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 1.9e-10 68.9 63 52.4
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 1.9e-10 68.9 63 52.4
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 1.9e-10 68.9 54 61.1
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 1.9e-10 68.9 63 52.4
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 1.9e-10 68.9 54 61.1
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 1.9e-10 68.9 55 67.3
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 2.5e-10 68.6 54 61.1
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 7.3e-10 67.0 67 52.2
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 1.2e-07 59.7 66 43.9
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.5e-07 59.3 65 44.6
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 5.8e-07 57.4 69 44.9
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 1.3e-06 56.2 35 77.1
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 8.3e-06 53.5 46 54.3


User provided reference genes

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