Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 5.4e-65 250.8 119 100.0
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 5.8e-35 151.0 119 68.9
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 1.3e-26 123.2 122 56.6
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 8.4e-26 120.6 120 57.5
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 3.2e-25 118.6 121 54.5
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 5.3e-20 101.3 119 49.6
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 6.9e-20 100.9 105 53.3
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 7.7e-19 97.4 119 48.7
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 1.3e-18 96.7 102 52.9
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 1.7e-18 96.3 119 47.9
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 6.5e-18 94.4 113 48.7
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 7.9e-16 87.4 104 48.1
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 3.0e-15 85.5 119 46.2
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 3.9e-15 85.1 120 47.5
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 1.5e-14 83.2 111 45.0
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 2.0e-14 82.8 88 55.7
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 5.7e-14 81.3 109 47.7
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 7.4e-14 80.9 119 44.5
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 9.7e-14 80.5 107 47.7
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 9.7e-14 80.5 98 46.9
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 1.3e-13 80.1 119 42.0
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 1.3e-13 80.1 123 43.1
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 1.3e-13 80.1 123 43.1
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 1.7e-13 79.7 106 47.2
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 2.2e-13 79.3 120 45.0
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 2.8e-13 79.0 100 50.0
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.8e-12 76.3 121 42.1
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 1.8e-12 76.3 119 40.3
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 2.4e-12 75.9 96 46.9
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 2.4e-12 75.9 121 42.1
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 4.1e-12 75.1 119 39.5
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 4.1e-12 75.1 104 43.3
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 4.1e-12 75.1 127 40.9
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 5.3e-12 74.7 121 42.1
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 6.9e-12 74.3 129 41.9
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 6.9e-12 74.3 119 43.7
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 6.9e-12 74.3 106 43.4
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 1.2e-11 73.6 129 40.3
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 1.5e-11 73.2 96 44.8
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 3.4e-11 72.0 122 40.2
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 4.5e-11 71.6 95 47.4
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 5.9e-11 71.2 101 37.6
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 7.7e-11 70.9 72 52.8
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 2.2e-10 69.3 119 38.7
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 2.9e-10 68.9 99 43.4
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 3.8e-10 68.6 102 45.1
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 5.0e-10 68.2 107 42.1
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 5.0e-10 68.2 120 42.5
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 6.5e-10 67.8 122 37.7
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 2.5e-09 65.9 108 39.8
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 2.5e-09 65.9 98 41.8
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 2.5e-09 65.9 108 40.7
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 3.2e-09 65.5 76 46.1
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 4.2e-09 65.1 126 39.7
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 4.2e-09 65.1 124 40.3
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 4.2e-09 65.1 72 50.0
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 4.2e-09 65.1 72 50.0
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 5.5e-09 64.7 123 39.0
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 5.5e-09 64.7 71 46.5
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 7.2e-09 64.3 122 38.5
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 7.2e-09 64.3 126 38.9
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 7.2e-09 64.3 122 37.7
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 1.2e-08 63.5 122 41.0
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.2e-08 63.5 101 35.6
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 1.2e-08 63.5 126 38.1
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 1.6e-08 63.2 122 37.7
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.6e-08 63.2 104 43.3
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 2.1e-08 62.8 124 35.5
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 2.7e-08 62.4 131 38.9
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 3.6e-08 62.0 126 38.9
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 3.6e-08 62.0 126 38.9
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 3.6e-08 62.0 126 38.9
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 3.6e-08 62.0 123 39.0
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 7.9e-08 60.8 104 39.4
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 1.0e-07 60.5 120 40.0
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 1.4e-07 60.1 103 35.9
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 1.4e-07 60.1 121 35.5
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.8e-07 59.7 108 40.7
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 1.8e-07 59.7 104 38.5
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.8e-07 59.7 104 38.5
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.8e-07 59.7 104 38.5
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 3.9e-07 58.5 67 47.8
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 5.1e-07 58.2 94 36.2
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 5.1e-07 58.2 69 46.4
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 5.1e-07 58.2 76 42.1
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 6.7e-07 57.8 104 38.5
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 8.8e-07 57.4 92 39.1
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 1.1e-06 57.0 76 42.1
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 1.5e-06 56.6 105 38.1
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.6e-06 55.8 109 36.7
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-06 55.8 109 32.1
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 3.3e-06 55.5 73 41.1
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 5.7e-06 54.7 119 36.1
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 9.7e-06 53.9 105 37.1


User provided reference genes

Program Settings