Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.5e-62 242.7 120 100.0
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 8.2e-61 236.9 120 96.7
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.1e-60 236.5 120 96.7
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 6.9e-60 233.8 120 95.0
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 9.0e-60 233.4 120 94.2
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 9.0e-60 233.4 120 94.2
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 9.0e-60 233.4 120 95.8
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.2e-59 233.0 120 94.2
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 1.5e-59 232.6 120 94.2
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.5e-59 232.6 120 95.0
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.0e-59 232.3 120 94.2
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 2.6e-59 231.9 120 94.2
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.6e-59 231.9 120 93.3
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 3.4e-59 231.5 119 94.1
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 3.4e-59 231.5 120 93.3
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 3.4e-59 231.5 120 93.3
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.8e-59 230.7 120 94.2
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 5.8e-59 230.7 120 94.2
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 7.6e-59 230.3 120 94.2
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 7.6e-59 230.3 119 93.3
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 7.6e-59 230.3 119 94.1
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 7.6e-59 230.3 119 94.1
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 7.6e-59 230.3 120 93.3
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 7.6e-59 230.3 120 93.3
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.0e-58 229.9 120 93.3
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.0e-58 229.9 120 93.3
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.3e-58 229.6 118 94.1
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.3e-58 229.6 118 94.1
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.3e-58 229.6 120 92.5
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 1.3e-58 229.6 120 94.2
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.3e-58 229.6 120 94.2
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.7e-58 229.2 120 92.5
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.7e-58 229.2 120 93.3
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 2.2e-58 228.8 118 94.1
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 2.2e-58 228.8 120 92.5
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 2.2e-58 228.8 120 93.3
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.2e-58 228.8 119 92.4
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 2.9e-58 228.4 120 93.3
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.9e-58 228.4 120 92.5
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 2.9e-58 228.4 120 92.5
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.8e-58 228.0 120 92.5
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 3.8e-58 228.0 120 93.3
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 3.8e-58 228.0 120 91.7
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 4.9e-58 227.6 118 94.1
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 4.9e-58 227.6 120 93.3
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 4.9e-58 227.6 120 92.5
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 6.5e-58 227.3 120 92.5
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 6.5e-58 227.3 120 91.7
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 6.5e-58 227.3 120 92.5
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 8.4e-58 226.9 118 93.2
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 1.1e-57 226.5 119 92.4
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.1e-57 226.5 120 91.7
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 1.1e-57 226.5 120 90.8
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.4e-57 226.1 119 90.8
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 1.4e-57 226.1 119 90.8
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 1.4e-57 226.1 119 90.8
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.4e-57 226.1 118 91.5
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 1.4e-57 226.1 120 91.7
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 1.4e-57 226.1 118 92.4
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.9e-57 225.7 120 91.7
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 1.9e-57 225.7 120 91.7
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 2.5e-57 225.3 118 92.4
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 2.5e-57 225.3 119 91.6
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.5e-57 225.3 120 90.8
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 2.5e-57 225.3 119 93.3
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 3.2e-57 224.9 119 90.8
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 3.2e-57 224.9 119 90.8
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 3.2e-57 224.9 119 90.8
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 3.2e-57 224.9 118 92.4
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.2e-57 224.9 120 90.8
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 3.2e-57 224.9 120 90.0
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 4.2e-57 224.6 120 90.0
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 7.1e-57 223.8 120 90.8
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 7.1e-57 223.8 120 91.7
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 9.3e-57 223.4 119 89.9
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 9.3e-57 223.4 119 89.9
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.2e-56 223.0 119 90.8
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.6e-56 222.6 120 90.0
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 2.1e-56 222.2 120 90.8
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 2.7e-56 221.9 120 90.8
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 2.7e-56 221.9 120 90.8
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 3.5e-56 221.5 120 88.3
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 3.5e-56 221.5 119 91.6
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 3.5e-56 221.5 118 91.5
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 4.6e-56 221.1 120 90.0
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 4.6e-56 221.1 120 90.0
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 6.0e-56 220.7 121 90.9
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 6.0e-56 220.7 120 91.7
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 6.0e-56 220.7 121 90.9
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 7.9e-56 220.3 119 88.2
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 7.9e-56 220.3 118 89.8
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.3e-55 219.5 121 90.1
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.3e-55 219.5 121 90.1
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.8e-55 219.2 120 88.3
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 2.3e-55 218.8 120 88.3
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 3.0e-55 218.4 119 89.1
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 3.9e-55 218.0 118 90.7
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 3.9e-55 218.0 120 89.2
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 6.7e-55 217.2 118 88.1
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.1e-54 216.5 147 76.9
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.5e-54 216.1 117 90.6
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.5e-54 216.1 117 90.6
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 4.3e-54 214.5 115 90.4
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 4.3e-54 214.5 119 87.4
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 4.3e-54 214.5 120 85.8
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 5.7e-54 214.2 120 85.8
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 7.4e-54 213.8 120 85.8
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 9.7e-54 213.4 120 85.0
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.6e-53 212.6 120 85.0
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.8e-52 209.1 120 88.3
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.2e-51 206.5 122 87.7
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 7.7e-51 203.8 142 73.2
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.0e-50 203.4 108 92.6
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.0e-50 203.4 120 85.0
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.0e-50 203.4 120 85.0
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.7e-50 202.6 120 85.0
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 2.9e-50 201.8 116 87.1
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.9e-49 199.1 120 83.3
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 1.8e-47 192.6 120 75.0
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 6.7e-47 190.7 108 85.2
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 3.4e-43 178.3 98 87.8
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 1.4e-41 172.9 117 73.5
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.9e-41 172.6 98 85.7
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.2e-40 169.9 102 81.4
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 4.7e-40 167.9 118 70.3
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 9.1e-36 153.7 144 57.6
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 5.9e-35 151.0 114 64.0
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.3e-34 149.8 114 64.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 2.2e-34 149.1 114 63.2
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 5.5e-33 144.4 113 61.9
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 8.0e-32 140.6 96 78.1
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 1.4e-31 139.8 92 77.2
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 3.9e-31 138.3 99 72.7
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 9.7e-30 133.7 115 55.7
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 1.2e-27 126.7 92 70.7
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 8.5e-26 120.6 59 96.6
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 7.2e-25 117.5 60 88.3
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 9.4e-25 117.1 119 50.4
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.2e-24 116.7 124 58.1
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 4.7e-24 114.8 115 56.5
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-23 113.2 73 80.8
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 8.8e-23 110.5 82 68.3
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.0e-22 109.4 111 45.9
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 7.5e-22 107.5 59 86.4
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 9.7e-22 107.1 109 46.8
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 8.3e-21 104.0 60 83.3
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 5.9e-19 97.8 119 50.4
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 2.6e-14 82.4 61 65.6
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 1.8e-12 76.3 143 34.3
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 1.8e-12 76.3 42 90.5
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.5e-09 66.6 103 35.9


User provided reference genes

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