Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 0.0e+00 1139.4 597 100.0
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 1.0e-164 584.3 661 56.9
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 2.9e-159 566.2 676 51.2
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 2.3e-156 556.6 639 55.1
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 8.8e-156 554.7 627 54.9
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 3.8e-151 539.3 670 51.8
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 3.6e-149 532.7 665 52.0
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 4.4e-147 525.8 682 52.1
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 6.3e-146 521.9 670 51.2
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.8e-145 520.4 671 51.1
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 4.1e-145 519.2 644 52.0
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 7.0e-145 518.5 665 51.1
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 1.0e-143 514.6 660 51.4
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 1.3e-143 514.2 659 50.8
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 5.5e-142 508.8 663 48.9
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.8e-140 503.8 563 54.4
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.4e-139 499.2 677 49.8
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 1.3e-138 497.7 642 50.0
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 2.8e-138 496.5 676 49.3
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 6.3e-138 495.4 634 49.1
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.1e-137 494.6 678 49.3
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 1.8e-137 493.8 678 48.2
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 2.4e-137 493.4 598 52.7
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 7.0e-137 491.9 688 47.8
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 7.0e-137 491.9 688 48.0
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 5.0e-135 485.7 676 48.5
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 2.5e-134 483.4 579 52.3
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.6e-133 480.7 555 53.2
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.6e-133 479.6 664 47.9
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 4.7e-133 479.2 644 49.8
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 6.1e-133 478.8 656 48.8
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 1.0e-132 478.0 635 48.0
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 2.3e-132 476.9 656 47.7
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 1.2e-131 474.6 645 47.8
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 1.5e-131 474.2 648 48.3
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 5.7e-131 472.2 620 48.9
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 5.7e-131 472.2 719 46.3
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 1.7e-130 470.7 571 52.0
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 3.5e-128 463.0 592 50.2
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 1.0e-127 461.5 646 46.3
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 3.8e-127 459.5 697 45.5
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 5.6e-126 455.7 646 47.2
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 6.8e-124 448.7 627 48.2
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 8.9e-124 448.4 731 44.6
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 1.3e-122 444.5 644 47.2
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 1.2e-120 438.0 552 50.4
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 3.5e-120 436.4 559 50.3
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 1.9e-118 430.6 556 49.8
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 1.6e-117 427.6 388 62.1
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 6.2e-117 425.6 556 49.5
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 4.3e-110 402.9 312 71.5
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 4.7e-109 399.4 593 45.9
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 1.9e-105 387.5 380 58.9
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 1.1e-102 378.3 434 52.1
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 6.2e-101 372.5 246 80.9
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 1.3e-98 364.8 557 46.3
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 1.4e-97 361.3 544 46.7
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 3.6e-93 346.7 461 50.3
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 5.6e-86 322.8 321 58.9
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 1.3e-85 321.6 278 65.1
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 3.8e-82 310.1 278 62.9
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 8.7e-79 298.9 506 41.7
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 7.6e-75 285.8 615 36.3
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 5.5e-73 279.6 624 39.3
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 3.5e-72 276.9 588 38.3
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 3.3e-70 270.4 434 44.9
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 1.0e-63 248.8 422 45.0
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 4.2e-57 226.9 221 56.6
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 8.2e-53 212.6 274 45.3
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 7.7e-51 206.1 387 41.3
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 1.4e-47 195.3 379 41.2
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 2.5e-41 174.5 176 52.8
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 6.1e-40 169.9 364 36.3
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 1.1e-38 165.6 225 50.7
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 1.3e-34 152.1 208 43.8
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 8.5e-34 149.4 466 32.2
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.2e-32 145.6 272 37.1
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 3.7e-29 134.0 150 56.7
Actinidia36758 Actinidia chinensis HOM05D007670 ORTHO05D009646 6.3e-29 133.3 76 84.2
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.9e-27 126.7 234 36.3
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.7e-27 126.3 329 30.4
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.7e-27 126.3 329 30.4
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.9e-26 124.4 350 31.4
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.6e-24 117.5 317 31.9
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 8.8e-23 112.8 124 54.0
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.1e-20 105.9 403 31.8
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 2.3e-18 98.2 288 31.9
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.6e-16 92.0 322 26.4
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 1.0e-15 89.4 260 30.0
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 6.3e-13 80.1 101 53.5
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 4.1e-12 77.4 127 37.8
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 1.5e-09 68.9 285 24.9
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 1.5e-09 68.9 287 24.4
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 1.9e-09 68.6 247 25.9
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 4.3e-09 67.4 270 25.9
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 4.3e-09 67.4 272 25.0
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 7.3e-09 66.6 270 26.3
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 1.6e-08 65.5 321 23.7
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 2.1e-08 65.1 309 24.6
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.1e-08 65.1 256 25.8
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.1e-08 65.1 256 25.8
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 3.6e-08 64.3 274 25.2
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 4.7e-08 63.9 274 24.1
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 6.1e-08 63.5 272 25.0
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 6.1e-08 63.5 270 25.9
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 6.1e-08 63.5 259 23.9
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 8.0e-08 63.2 271 24.0
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 8.0e-08 63.2 268 24.6
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 8.0e-08 63.2 239 25.1
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 1.4e-07 62.4 240 22.9
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 1.8e-07 62.0 272 24.3
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 1.8e-07 62.0 270 25.6
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 4.0e-07 60.8 274 24.5
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 5.2e-07 60.5 266 25.2
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 6.8e-07 60.1 271 24.4
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 6.8e-07 60.1 173 27.7
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 1.2e-06 59.3 232 24.6
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 1.2e-06 59.3 282 24.1
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 1.2e-06 59.3 276 23.9
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 1.5e-06 58.9 271 24.7
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 1.5e-06 58.9 214 23.8
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 1.5e-06 58.9 253 23.3
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 1.5e-06 58.9 245 23.7
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 1.5e-06 58.9 361 23.8
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 2.0e-06 58.5 314 23.9
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 2.0e-06 58.5 207 25.1
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 2.6e-06 58.2 269 23.8
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 3.4e-06 57.8 374 23.3
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 3.4e-06 57.8 258 24.8
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 3.4e-06 57.8 398 23.6
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 5.8e-06 57.0 246 23.6
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 7.5e-06 56.6 271 23.6
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 9.8e-06 56.2 277 23.1
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 9.8e-06 56.2 376 23.7


User provided reference genes

Program Settings