Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1815.8 920 100.0
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1325.1 1077 67.9
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1323.9 1090 65.6
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1283.1 1211 59.3
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1222.2 1088 62.2
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1199.5 1085 61.2
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1195.3 1079 59.8
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1194.1 1078 61.5
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1191.4 1073 63.0
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1187.6 1092 59.2
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1187.2 1065 61.0
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1186.4 1090 59.4
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1184.9 1074 60.1
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1181.8 1111 59.7
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1179.5 1094 59.0
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1174.5 1068 60.9
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1171.8 1086 59.1
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1171.0 1082 60.4
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1167.9 1084 60.1
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1167.5 1088 60.1
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1157.1 1059 60.7
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1156.7 1083 59.7
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1151.7 1059 60.4
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1151.7 1070 59.0
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1148.3 1068 58.8
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1147.1 1085 59.8
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1146.3 1078 58.1
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1142.9 1072 60.0
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1142.1 1094 58.0
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1140.9 1072 58.8
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1138.6 1063 59.0
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1135.2 1074 59.6
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1134.8 1087 59.2
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1129.0 1074 58.6
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1128.2 1089 56.8
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1128.2 1076 57.1
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1125.9 1056 58.4
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1125.2 1073 59.5
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1123.6 1062 59.2
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1122.8 1060 57.7
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1122.8 1079 56.8
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1122.5 1074 59.5
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1120.9 1106 56.6
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1120.9 1080 58.7
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1120.9 1075 57.6
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1117.8 1063 57.5
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1115.1 1069 58.6
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1114.8 1049 59.8
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1114.4 1061 58.7
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1113.6 1065 58.8
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1113.6 1078 57.8
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1113.6 1074 58.0
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1113.2 1055 58.2
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1113.2 1056 59.0
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1112.8 1075 56.9
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1112.1 1072 59.0
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1111.7 1078 57.9
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1111.3 1064 59.2
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1109.0 1069 58.4
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1108.2 1055 58.4
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1106.3 1094 57.6
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1102.8 1083 58.1
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1100.5 1085 57.3
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1099.7 1079 57.3
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1095.1 1058 57.1
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1090.9 1073 56.8
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1090.9 1085 57.2
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1088.9 1083 57.6
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1087.4 1060 59.3
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1083.9 1070 56.8
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1082.8 1070 56.7
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1080.5 1067 56.5
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1080.5 1056 56.1
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1077.0 1084 55.6
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1076.6 1113 55.1
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1076.2 1080 54.3
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1075.5 1057 58.5
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 1.3e-311 1073.2 1078 56.7
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 1.3e-311 1073.2 1054 58.0
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 5.7e-311 1070.8 1065 57.2
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 1.6e-310 1069.3 1075 56.8
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 2.7e-305 1052.0 763 70.9
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 7.9e-305 1050.4 1078 55.5
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 1.1e-303 1046.6 759 70.1
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 1.5e-295 1019.6 759 71.0
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 1.3e-294 1016.5 1086 53.3
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 2.2e-291 1005.7 1088 52.8
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 1.0e-283 980.3 756 68.3
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 1.0e-283 980.3 758 68.2
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 3.1e-277 958.7 1073 53.5
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 5.0e-275 951.4 1128 50.9
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 2.3e-272 942.6 722 69.4
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 5.1e-272 941.4 1073 50.4
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 1.4e-266 923.3 1008 50.6
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 6.1e-265 917.9 1066 48.6
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 8.2e-262 907.5 775 64.0
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 2.1e-249 866.3 1201 44.3
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 1.1e-242 844.0 902 55.8
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 4.1e-229 798.9 995 52.9
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.3e-203 713.4 720 55.6
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 1.2e-188 664.5 542 65.7
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 6.7e-187 658.7 1076 38.8
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 2.1e-177 627.1 1057 39.5
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 1.5e-162 577.8 641 51.6
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 3.0e-155 553.5 610 53.4
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 4.5e-143 513.1 756 40.9
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 7.0e-136 489.2 404 66.3
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 3.7e-105 387.1 502 46.2
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 6.6e-102 376.3 1002 29.9
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 1.1e-45 189.5 180 59.4
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 3.1e-43 181.4 112 79.5
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 7.9e-39 166.8 163 56.4
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 9.5e-16 90.1 65 61.5
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.2e-12 79.0 77 53.2
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.2e-12 79.0 77 53.2
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 4.5e-10 71.2 40 80.0
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 1.4e-06 59.7 59 47.5
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 2.3e-06 58.9 59 47.5


User provided reference genes

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