Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.6e-106 388.7 185 100.0
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.0e-42 176.4 89 92.1
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.7e-41 173.3 82 98.8
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.1e-40 170.6 190 53.2
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 1.9e-40 169.9 89 89.9
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 1.9e-40 169.9 87 92.0
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 2.5e-40 169.5 82 96.3
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 2.5e-40 169.5 82 96.3
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 2.5e-40 169.5 82 96.3
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 3.2e-40 169.1 81 96.3
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 3.2e-40 169.1 81 96.3
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 4.2e-40 168.7 188 52.1
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 4.2e-40 168.7 190 52.6
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 5.5e-40 168.3 190 52.1
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 5.5e-40 168.3 82 95.1
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 5.5e-40 168.3 82 95.1
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 5.5e-40 168.3 82 95.1
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 5.5e-40 168.3 190 52.1
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 5.5e-40 168.3 82 95.1
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 7.2e-40 167.9 82 95.1
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 1.2e-39 167.2 82 93.9
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.2e-39 167.2 80 96.2
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.2e-39 167.2 82 93.9
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.2e-39 167.2 82 93.9
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.2e-39 167.2 82 93.9
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.2e-39 167.2 82 95.1
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 1.2e-39 167.2 80 96.2
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.2e-39 167.2 190 51.6
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.2e-39 167.2 82 95.1
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 2.1e-39 166.4 82 95.1
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 2.7e-39 166.0 86 89.5
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 2.7e-39 166.0 82 92.7
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 2.7e-39 166.0 82 92.7
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 2.7e-39 166.0 82 92.7
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 3.6e-39 165.6 82 92.7
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 3.6e-39 165.6 82 92.7
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 3.6e-39 165.6 81 93.8
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 4.6e-39 165.2 82 93.9
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 4.6e-39 165.2 79 96.2
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 4.6e-39 165.2 79 96.2
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 4.6e-39 165.2 79 96.2
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 6.1e-39 164.9 81 91.4
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 6.1e-39 164.9 80 95.0
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 6.1e-39 164.9 82 92.7
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 6.1e-39 164.9 82 92.7
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 7.9e-39 164.5 82 92.7
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 7.9e-39 164.5 80 93.8
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.0e-38 164.1 190 50.5
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 1.0e-38 164.1 81 92.6
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.0e-38 164.1 82 91.5
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.0e-38 164.1 80 93.8
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.0e-38 164.1 80 93.8
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.0e-38 164.1 80 93.8
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.0e-38 164.1 80 93.8
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 1.0e-38 164.1 81 92.6
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.0e-38 164.1 79 94.9
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 1.4e-38 163.7 82 91.5
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.4e-38 163.7 82 92.7
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 1.4e-38 163.7 82 92.7
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 1.4e-38 163.7 82 91.5
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 1.4e-38 163.7 82 91.5
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 1.4e-38 163.7 82 91.5
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 1.8e-38 163.3 79 94.9
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.8e-38 163.3 80 92.5
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 1.8e-38 163.3 81 92.6
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.3e-38 162.9 190 51.1
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.3e-38 162.9 82 91.5
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.3e-38 162.9 79 94.9
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 3.0e-38 162.5 82 90.2
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 3.0e-38 162.5 82 90.2
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 3.0e-38 162.5 82 90.2
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 3.0e-38 162.5 82 91.5
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 3.9e-38 162.2 82 90.2
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 5.1e-38 161.8 82 89.0
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 5.1e-38 161.8 82 90.2
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 5.1e-38 161.8 79 92.4
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 5.1e-38 161.8 79 93.7
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 5.1e-38 161.8 79 93.7
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 6.7e-38 161.4 82 89.0
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 6.7e-38 161.4 82 89.0
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 6.7e-38 161.4 80 92.5
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 6.7e-38 161.4 82 91.5
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 6.7e-38 161.4 79 93.7
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 8.8e-38 161.0 80 90.0
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 8.8e-38 161.0 87 83.9
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.1e-37 160.6 79 92.4
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.1e-37 160.6 79 93.7
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.5e-37 160.2 79 91.1
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 1.5e-37 160.2 79 94.9
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 2.0e-37 159.8 82 89.0
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 2.6e-37 159.5 82 87.8
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 3.3e-37 159.1 82 86.6
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.4e-37 158.7 82 84.1
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 5.7e-37 158.3 85 85.9
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 7.4e-37 157.9 82 86.6
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 9.7e-37 157.5 78 89.7
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 9.7e-37 157.5 80 87.5
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 9.7e-37 157.5 80 85.0
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 1.3e-36 157.1 82 86.6
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 1.3e-36 157.1 82 86.6
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.3e-36 157.1 80 88.8
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.7e-36 156.8 78 91.0
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 1.7e-36 156.8 80 87.5
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 2.2e-36 156.4 82 85.4
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 2.8e-36 156.0 187 49.2
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 2.8e-36 156.0 79 86.1
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 3.7e-36 155.6 79 89.9
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 4.8e-36 155.2 82 84.1
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.8e-36 155.2 79 86.1
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.8e-36 155.2 78 87.2
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 6.3e-36 154.8 79 88.6
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 8.2e-36 154.5 82 81.7
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 2.4e-35 152.9 79 86.1
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 2.4e-35 152.9 79 86.1
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 2.4e-35 152.9 79 86.1
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 4.1e-35 152.1 79 86.1
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 4.1e-35 152.1 79 84.8
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 4.1e-35 152.1 79 86.1
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 5.3e-35 151.8 79 86.1
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.4e-34 149.1 79 83.5
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 7.7e-34 147.9 80 85.0
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 2.2e-33 146.4 73 90.4
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 2.2e-33 146.4 74 90.5
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.2e-33 146.4 158 51.3
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 3.2e-32 142.5 71 94.4
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 2.1e-31 139.8 71 88.7
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.8e-27 126.7 76 75.0
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.6e-26 123.6 68 82.4
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 7.7e-26 121.3 68 80.9
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 7.7e-26 121.3 68 80.9
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 6.5e-25 118.2 72 70.8
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 6.7e-22 108.2 135 48.1
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.3e-21 105.9 77 58.4
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 1.2e-18 97.4 51 82.4
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 5.9e-18 95.1 50 82.0
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 1.0e-17 94.4 53 81.1
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.7e-17 93.6 68 55.9
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.7e-15 86.3 132 42.4
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 6.3e-12 75.1 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 6.3e-12 75.1 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 6.3e-12 75.1 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 6.3e-12 75.1 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 8.3e-12 74.7 37 89.2


User provided reference genes

Program Settings