Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 0.0e+00 1180.6 676 100.0
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 5.0e-224 781.6 702 70.1
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 2.0e-220 769.6 727 64.6
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 2.3e-205 719.5 705 65.2
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 3.2e-202 709.1 711 64.0
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 9.6e-183 644.4 697 60.4
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 1.1e-175 620.9 676 59.5
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 1.1e-175 620.9 676 59.5
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 2.6e-172 609.8 700 57.7
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 4.6e-169 599.0 703 52.9
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 1.0e-168 597.8 709 53.3
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 5.6e-167 592.0 740 54.7
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 9.6e-167 591.3 692 56.6
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 4.8e-166 589.0 697 56.1
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 4.0e-165 585.9 700 57.7
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 2.2e-163 580.1 698 57.0
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 8.4e-163 578.2 704 58.1
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.2e-162 576.2 704 54.3
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 4.2e-162 575.9 688 57.6
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 2.1e-161 573.5 651 55.8
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 1.3e-160 570.9 708 56.9
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 3.3e-159 566.2 708 56.1
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 7.4e-159 565.1 709 54.2
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 2.1e-158 563.5 703 55.8
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 2.1e-158 563.5 695 51.7
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.1e-157 559.7 696 56.3
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 1.2e-156 557.8 689 56.0
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 2.0e-156 557.0 707 54.2
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 3.4e-156 556.2 708 55.6
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 4.9e-155 552.4 686 54.7
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 6.5e-155 552.0 711 55.0
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 5.5e-154 548.9 716 53.9
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 5.5e-154 548.9 704 49.1
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.8e-152 543.9 736 52.4
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 2.3e-152 543.5 701 55.8
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 8.7e-152 541.6 702 48.0
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 1.1e-151 541.2 688 53.2
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 1.9e-151 540.4 695 49.9
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 1.3e-150 537.7 700 49.3
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 1.6e-150 537.3 712 49.4
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 2.8e-150 536.6 708 52.7
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 4.8e-150 535.8 725 51.6
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 6.2e-150 535.4 697 55.4
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 6.2e-150 535.4 494 59.3
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 1.4e-149 534.3 698 47.1
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 6.9e-149 531.9 737 49.5
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 6.9e-149 531.9 634 55.7
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 9.0e-149 531.6 703 54.9
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 2.6e-148 530.0 697 52.8
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 2.6e-148 530.0 705 53.2
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 7.6e-148 528.5 729 50.3
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 2.2e-147 526.9 670 51.9
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 5.0e-147 525.8 693 52.8
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 8.4e-147 525.0 697 52.2
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 9.3e-146 521.5 703 55.6
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 2.7e-145 520.0 696 52.6
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.7e-145 520.0 703 53.6
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.6e-145 519.2 703 53.1
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 7.9e-145 518.5 686 54.2
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 1.8e-144 517.3 683 54.6
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 2.3e-144 516.9 703 51.5
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 3.3e-143 513.1 700 46.7
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 2.2e-142 510.4 700 47.6
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 2.8e-142 510.0 679 51.3
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 3.7e-142 509.6 703 50.5
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 3.7e-142 509.6 691 46.0
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 4.8e-142 509.2 705 53.3
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 6.9e-141 505.4 697 51.5
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.7e-139 500.7 672 46.6
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 3.8e-139 499.6 700 52.4
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 5.0e-139 499.2 700 52.0
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 5.0e-139 499.2 698 50.3
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 6.5e-139 498.8 703 52.8
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 6.5e-139 498.8 703 52.6
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 4.2e-138 496.1 697 50.9
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.2e-137 494.6 667 49.8
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 1.2e-137 494.6 668 51.8
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 3.6e-137 493.0 730 45.9
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 2.0e-135 487.3 713 44.5
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 4.3e-135 486.1 634 52.7
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 7.4e-135 485.3 668 50.7
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 9.7e-135 485.0 701 51.1
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 6.9e-133 478.8 705 52.9
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 6.9e-133 478.8 665 53.2
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 5.9e-132 475.7 637 54.5
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 1.7e-131 474.2 659 47.8
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 1.9e-130 470.7 671 49.8
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 5.5e-130 469.2 689 49.9
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 1.1e-127 461.5 685 50.2
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 2.2e-123 447.2 671 49.3
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 3.8e-123 446.4 671 49.0
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 2.0e-119 434.1 688 48.3
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 3.1e-117 426.8 667 48.4
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 2.0e-116 424.1 668 48.1
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 2.5e-114 417.2 670 48.8
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 2.5e-114 417.2 670 49.0
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 2.5e-114 417.2 670 48.2
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 7.2e-114 415.6 670 48.2
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 6.8e-112 409.1 499 48.9
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 4.8e-110 402.9 607 51.1
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 5.0e-107 392.9 686 46.1
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 7.5e-95 352.4 743 42.0
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.3e-94 351.7 737 41.5
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 8.6e-91 339.0 761 38.4
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 6.8e-88 329.3 767 36.5
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 8.9e-88 328.9 702 43.9
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 3.5e-84 317.0 648 42.7
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 2.6e-79 300.8 250 63.6
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 2.5e-74 284.3 749 38.7
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 4.0e-72 276.9 670 35.5
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 2.5e-66 257.7 496 37.7
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 8.9e-64 249.2 496 37.3
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 1.7e-59 235.0 331 44.7
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 3.3e-58 230.7 464 34.5
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.8e-56 224.9 468 44.4
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 9.0e-56 222.6 251 53.4
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 1.8e-35 155.2 382 31.9
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.1e-34 152.5 198 44.9
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 7.4e-34 149.8 449 31.2
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 7.6e-31 139.8 658 29.0
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 4.2e-29 134.0 153 48.4
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 1.3e-27 129.0 391 31.5
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 4.2e-21 107.5 175 40.0
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 2.8e-17 94.7 106 46.2
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 3.7e-17 94.4 53 79.2
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 7.7e-15 86.7 267 34.5
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 1.7e-14 85.5 104 43.3
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 2.2e-14 85.1 73 53.4
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 5.0e-14 84.0 53 69.8
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 5.5e-13 80.5 96 50.0
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 7.4e-10 70.1 47 68.1
Ah.06g195240 Amaranthus hybridus HOM05D000941 ORTHO05D000882 6.5e-06 57.0 82 37.8


User provided reference genes

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