Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia07622 Actinidia chinensis HOM05D005276 ORTHO05D006813 0.0e+00 1080.9 521 100.0
Rhsim05G0142600 Rhododendron simsii HOM05D005276 ORTHO05D006813 4.3e-191 671.8 522 65.1
Rhsim05G0197900 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.6e-185 653.3 532 62.2
Rhsim04G0165600 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.5e-183 646.0 521 63.3
Hma1.2p1_0370F.1_g137770 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 4.8e-182 641.7 520 62.3
RcHm_v2.0_Chr5g0076681 Rosa chinensis HOM05D005276 ORTHO05D006813 4.8e-182 641.7 528 62.7
vmacro22834 Vaccinium macrocarpon HOM05D005276 ORTHO05D006813 2.6e-180 636.0 519 62.8
TWI23G0671 Tripterygium wilfordii HOM05D005276 ORTHO05D006813 1.0e-168 597.4 515 59.0
CSS0029999 Camellia sinensis var. sinensis HOM05D005276 ORTHO05D006813 1.8e-141 506.9 471 55.2
Medtr8g038100 Medicago truncatula HOM05D005276 ORTHO05D006813 1.0e-139 501.1 527 52.2
PGR102G3141 Punica granatum HOM05D005276 ORTHO05D006813 2.1e-137 493.4 524 51.0
VMungo0720G2128 Vigna mungo HOM05D005276 ORTHO05D006813 1.3e-134 484.2 530 49.1
Phvul.007G276500 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 1.4e-133 480.7 536 48.5
Phvul.007G276000 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 4.8e-126 455.7 530 46.2
PGR102G1949 Punica granatum HOM05D005276 ORTHO05D006813 1.0e-123 448.0 577 44.4
vmacro00373 Vaccinium macrocarpon HOM05D005276 ORTHO05D006813 4.2e-122 442.6 442 54.1
Hma1.2p1_2291F.1_g319080 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 4.7e-121 439.1 486 50.4
Medtr8g038070 Medicago truncatula HOM05D005276 ORTHO05D006813 2.3e-120 436.8 471 51.8
PGR102G1815 Punica granatum HOM05D005276 ORTHO05D006813 6.3e-118 428.7 523 47.4
EL10Ac4g09362 Beta vulgaris HOM05D005276 ORTHO05D006813 6.0e-108 395.6 526 43.7
Lj3g0023477 Lotus japonicus HOM05D005276 ORTHO05D006813 7.3e-106 388.7 412 51.5
EL10Ac2g04798 Beta vulgaris HOM05D005276 ORTHO05D006813 6.4e-102 375.6 525 41.9
EL10Ac2g04799 Beta vulgaris HOM05D005276 ORTHO05D006813 7.1e-101 372.1 524 41.6
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.7e-92 343.6 226 73.9
Rhsim04G0073100 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.3e-91 341.3 226 72.6
Rhsim08G0006900 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.3e-91 341.3 226 73.0
Hma1.2p1_0472F.1_g160020 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 1.9e-90 337.4 231 72.3
Hma1.2p1_0052F.1_g030780 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 4.7e-89 332.8 231 71.4
Hma1.2p1_0472F.1_g160005 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 4.7e-89 332.8 231 71.4
Medtr0695s0030 Medicago truncatula HOM05D005276 ORTHO05D006813 6.8e-88 328.9 301 58.5
PGR031G1219 Punica granatum HOM05D005276 ORTHO05D006813 9.6e-82 308.5 217 69.1
Hma1.2p1_0472F.1_g159990 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 8.1e-81 305.4 212 70.3
Dinv42431 Davidia involucrata HOM05D005276 ORTHO05D006813 5.8e-71 272.7 517 35.6
Psat5g117800 Pisum sativum HOM05D005276 ORTHO05D006813 2.2e-70 270.8 226 58.4
Psat5g117840 Pisum sativum HOM05D005276 ORTHO05D006813 2.2e-70 270.8 226 58.4
Ca_08210_v3 Cicer arietinum L. HOM05D005276 ORTHO05D006813 1.4e-69 268.1 226 58.8
TPR.G33532 Trifolium pratense HOM05D005276 ORTHO05D006813 1.0e-67 261.9 226 56.6
Os04g0213100 Oryza sativa ssp. japonica HOM05D005276 ORTHO05D006813 1.8e-67 261.2 292 46.6
Medtr0057s0100 Medicago truncatula HOM05D005276 ORTHO05D006813 8.7e-67 258.8 226 54.9
CSS0004680 Camellia sinensis var. sinensis HOM05D005276 ORTHO05D006813 1.9e-66 257.7 244 55.7
Rhsim05G0197600 Rhododendron simsii HOM05D005276 ORTHO05D006813 3.3e-66 256.9 285 52.3
Medtr0057s0170 Medicago truncatula HOM05D005276 ORTHO05D006813 4.3e-66 256.5 226 54.9
TPR.G33522 Trifolium pratense HOM05D005276 ORTHO05D006813 5.6e-66 256.1 225 55.6
VMungo0720G3131 Vigna mungo HOM05D005276 ORTHO05D006813 1.3e-65 255.0 224 56.2
Psat0s876g0040 Pisum sativum HOM05D005276 ORTHO05D006813 6.2e-65 252.7 227 54.2
Psat0s876g0120 Pisum sativum HOM05D005276 ORTHO05D006813 1.1e-64 251.9 227 53.3
VMungo0720G2700 Vigna mungo HOM05D005276 ORTHO05D006813 4.0e-64 250.0 218 54.1
Phvul.007G276200 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 5.3e-64 249.6 225 54.2
Phvul.007G275900 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 1.2e-63 248.4 225 54.7
VMungo0720G1899 Vigna mungo HOM05D005276 ORTHO05D006813 2.0e-63 247.7 223 53.8
Phvul.007G276100 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 1.7e-62 244.6 225 53.3
Medtr7g103990 Medicago truncatula HOM05D005276 ORTHO05D006813 2.2e-62 244.2 227 52.9
Psat0s3494g0040 Pisum sativum HOM05D005276 ORTHO05D006813 6.5e-62 242.7 227 54.2
Psat1g110680 Pisum sativum HOM05D005276 ORTHO05D006813 6.5e-62 242.7 227 54.2
AUR62014758 Chenopodium quinoa HOM05D005276 ORTHO05D006813 8.4e-62 242.3 247 51.4
Phvul.007G277100 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 8.4e-62 242.3 225 53.3
Psat0s1021g0280 Pisum sativum HOM05D005276 ORTHO05D006813 1.1e-61 241.9 226 51.8
Phvul.008G252000 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 1.4e-61 241.5 225 53.8
EL10Ac3g05487 Beta vulgaris HOM05D005276 ORTHO05D006813 4.2e-61 240.0 226 52.7
EL10Ac1g01354 Beta vulgaris HOM05D005276 ORTHO05D006813 5.5e-61 239.6 226 52.7
EL10Ac1g01356 Beta vulgaris HOM05D005276 ORTHO05D006813 5.5e-61 239.6 226 52.7
EL10Ac1g01358 Beta vulgaris HOM05D005276 ORTHO05D006813 5.5e-61 239.6 226 52.7
Ca_23693_v3 Cicer arietinum L. HOM05D005276 ORTHO05D006813 6.0e-60 236.1 276 46.0
Phvul.007G275800 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 3.0e-59 233.8 224 52.2
Ah.02g117180 Amaranthus hybridus HOM05D005276 ORTHO05D006813 6.2e-57 226.1 226 50.4
RcHm_v2.0_Chr5g0076491 Rosa chinensis HOM05D005276 ORTHO05D006813 6.2e-57 226.1 168 69.6
EL10Ac1g01352 Beta vulgaris HOM05D005276 ORTHO05D006813 2.4e-56 224.2 226 50.0
Phvul.007G277000 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 3.1e-56 223.8 207 53.1
Phvul.009G133400 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 3.1e-56 223.8 225 50.2
Phvul.007G276300 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 4.1e-56 223.4 225 48.9
Phvul.007G275700 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 4.5e-55 219.9 207 52.7
AUR62014887 Chenopodium quinoa HOM05D005276 ORTHO05D006813 5.8e-55 219.5 227 47.6
PGR102G2116 Punica granatum HOM05D005276 ORTHO05D006813 6.1e-52 209.5 164 62.8
Hma1.2p1_0052F.1_g030770 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 1.3e-51 208.4 231 51.1
Hma1.2p1_0472F.1_g160029 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 1.3e-51 208.4 231 51.1
AUR62016119 Chenopodium quinoa HOM05D005276 ORTHO05D006813 2.3e-51 207.6 226 48.7
Medtr6g040290 Medicago truncatula HOM05D005276 ORTHO05D006813 2.3e-51 207.6 231 46.8
Psat0s971g0080 Pisum sativum HOM05D005276 ORTHO05D006813 9.7e-50 202.2 224 48.7
VMungo0720G1439 Vigna mungo HOM05D005276 ORTHO05D006813 4.8e-49 199.9 224 47.8
Medtr6g073540 Medicago truncatula HOM05D005276 ORTHO05D006813 1.1e-48 198.7 227 48.5
Phvul.007G275600 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 9.0e-48 195.7 232 44.4
AUR62041391 Chenopodium quinoa HOM05D005276 ORTHO05D006813 1.5e-47 194.9 226 47.8
Ah.10g029400 Amaranthus hybridus HOM05D005276 ORTHO05D006813 7.7e-47 192.6 226 42.5
EL10Ac1g02109 Beta vulgaris HOM05D005276 ORTHO05D006813 3.8e-46 190.3 255 44.7
Ah.02g121010 Amaranthus hybridus HOM05D005276 ORTHO05D006813 1.4e-45 188.3 226 44.2
Ca_03455_v3 Cicer arietinum L. HOM05D005276 ORTHO05D006813 2.5e-45 187.6 222 46.8
Dinv42430 Davidia involucrata HOM05D005276 ORTHO05D006813 3.2e-45 187.2 363 33.9
EL10Ac1g02090 Beta vulgaris HOM05D005276 ORTHO05D006813 4.2e-45 186.8 232 46.1
Phvul.007G276600 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 9.4e-45 185.7 202 49.0
Phvul.007G263500 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 4.6e-44 183.3 239 42.7
RcHm_v2.0_Chr5g0076401 Rosa chinensis HOM05D005276 ORTHO05D006813 6.1e-44 183.0 148 64.9
Medtr1g066530 Medicago truncatula HOM05D005276 ORTHO05D006813 3.0e-43 180.6 221 43.4
Medtr6g072470 Medicago truncatula HOM05D005276 ORTHO05D006813 8.8e-43 179.1 201 48.3
Medtr7g012000 Medicago truncatula HOM05D005276 ORTHO05D006813 8.8e-43 179.1 211 46.0
RcHm_v2.0_Chr5g0076801 Rosa chinensis HOM05D005276 ORTHO05D006813 1.7e-41 174.9 155 62.6
EL10Ac1g01353 Beta vulgaris HOM05D005276 ORTHO05D006813 2.8e-41 174.1 241 42.3
TPR.G33545 Trifolium pratense HOM05D005276 ORTHO05D006813 3.1e-40 170.6 221 41.6
EL10Ac1g02097 Beta vulgaris HOM05D005276 ORTHO05D006813 1.5e-39 168.3 209 45.0
Phvul.007G263700 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 1.5e-39 168.3 217 41.9
AUR62024089 Chenopodium quinoa HOM05D005276 ORTHO05D006813 1.7e-38 164.9 226 40.7
Phvul.007G276401 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 5.0e-38 163.3 157 51.0
Rhsim10G0134200 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.1e-37 162.2 267 39.0
Medtr6g048620 Medicago truncatula HOM05D005276 ORTHO05D006813 1.6e-36 158.3 227 39.6
TPR.G10459 Trifolium pratense HOM05D005276 ORTHO05D006813 2.1e-36 157.9 222 39.2
Medtr6g045077 Medicago truncatula HOM05D005276 ORTHO05D006813 4.7e-36 156.8 221 37.6
AUR62016935 Chenopodium quinoa HOM05D005276 ORTHO05D006813 2.3e-35 154.5 301 33.6
EL10Ac1g01355 Beta vulgaris HOM05D005276 ORTHO05D006813 5.7e-34 149.8 136 50.7
EL10Ac1g01357 Beta vulgaris HOM05D005276 ORTHO05D006813 5.7e-34 149.8 136 50.7
Ah.16g101350 Amaranthus hybridus HOM05D005276 ORTHO05D038198 9.7e-34 149.1 245 39.2
Medtr0807s0020 Medicago truncatula HOM05D005276 ORTHO05D006813 2.2e-33 147.9 224 36.6
Medtr6g048910 Medicago truncatula HOM05D005276 ORTHO05D006813 1.1e-32 145.6 223 38.1
Medtr4g102470 Medicago truncatula HOM05D005276 ORTHO05D006813 1.2e-31 142.1 183 42.6
SEGI_35002 Sequoiadendron giganteum HOM05D005276 ORTHO05D006813 3.5e-31 140.6 302 33.4
Medtr0216s0030 Medicago truncatula HOM05D005276 ORTHO05D006813 6.5e-30 136.3 198 37.4
vmacro13228 Vaccinium macrocarpon HOM05D005276 ORTHO05D006813 6.5e-30 136.3 253 36.8
Lj6C375G5 Lonicera japonica HOM05D005276 ORTHO05D001431 1.9e-29 134.8 259 32.8
VMungo0720G2085 Vigna mungo HOM05D005276 ORTHO05D006813 1.9e-29 134.8 141 50.4
Medtr6g048810 Medicago truncatula HOM05D005276 ORTHO05D006813 1.4e-27 128.6 300 27.3
EL10Ac1g02103 Beta vulgaris HOM05D005387 ORTHO05D006711 2.3e-27 127.9 219 40.6
Phvul.002G269700 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 4.0e-27 127.1 137 46.0
Phvul.007G276700 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 5.2e-27 126.7 114 52.6
AUR62037739 Chenopodium quinoa HOM05D005276 ORTHO05D038198 4.4e-26 123.6 288 33.7
RcHm_v2.0_Chr5g0076341 Rosa chinensis HOM05D005276 ORTHO05D006813 5.7e-26 123.2 102 60.8
Medtr6g049040 Medicago truncatula HOM05D005276 ORTHO05D006813 4.8e-25 120.2 159 42.8
TPR.G28516 Trifolium pratense HOM05D005276 ORTHO05D006813 9.1e-24 115.9 139 45.3
RcHm_v2.0_Chr5g0076541 Rosa chinensis HOM05D005276 ORTHO05D006813 5.9e-23 113.2 76 65.8
Rhsim10G0134800 Rhododendron simsii HOM05D005276 ORTHO05D339721 3.6e-20 104.0 129 41.9
Phvul.002G268600 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 3.0e-19 100.9 228 32.5
LjContig00272g0003041 Lotus japonicus HOM05D005276 ORTHO05D006813 6.8e-19 99.8 164 42.7
EL10Ac1g02088 Beta vulgaris HOM05D005387 ORTHO05D006711 1.2e-18 99.0 194 37.1
AUR62031308 Chenopodium quinoa HOM05D002644 ORTHO05D003267 2.6e-18 97.8 78 53.8
Medtr6g048880 Medicago truncatula HOM05D005276 ORTHO05D006813 5.7e-18 96.7 157 36.9
Phvul.007G252000 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 5.7e-18 96.7 120 42.5
AUR62037738 Chenopodium quinoa HOM05D005276 ORTHO05D006813 9.8e-18 95.9 176 33.5
EL10Ac1g02098 Beta vulgaris HOM05D005276 ORTHO05D006813 6.3e-17 93.2 86 48.8
vmacro23329 Vaccinium macrocarpon HOM05D005276 ORTHO05D006813 1.2e-15 89.0 135 45.2
Lj6C426G9 Lonicera japonica HOM05D005276 ORTHO05D006813 1.7e-14 85.1 67 62.7
Phvul.007G264000 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 2.9e-14 84.3 136 36.8
TPR.G40462 Trifolium pratense HOM05D005276 ORTHO05D006813 8.0e-12 76.3 111 36.9
Psat1g051400 Pisum sativum HOM05D005276 ORTHO05D006813 9.8e-10 69.3 84 44.0
Dinv03816 Davidia involucrata HOM05D031496 ORTHO05D029219 8.3e-09 66.2 59 50.8
TPR.G33511 Trifolium pratense HOM05D005276 ORTHO05D006813 8.3e-09 66.2 79 48.1
TPR.G33490 Trifolium pratense HOM05D005276 ORTHO05D006813 7.0e-08 63.2 71 46.5
Phvul.004G140200 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 8.6e-06 56.2 106 34.9


User provided reference genes

Program Settings