Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia07504 Actinidia chinensis HOM05D003634 ORTHO05D004146 1.2e-97 359.8 177 100.0
Actinidia07505 Actinidia chinensis HOM05D003634 ORTHO05D004146 2.0e-71 272.7 183 78.1
Actinidia12527 Actinidia chinensis HOM05D003634 ORTHO05D004146 5.8e-71 271.2 177 77.4
Gohir.A10G151800 Gossypium hirsutum HOM05D003634 ORTHO05D004146 1.7e-67 259.6 183 73.8
Gohir.D10G114500 Gossypium hirsutum HOM05D003634 ORTHO05D004146 1.7e-67 259.6 183 73.8
Gorai.011G126200 Gossypium raimondii HOM05D003634 ORTHO05D004146 1.7e-67 259.6 183 73.8
Rhsim12G0013500 Rhododendron simsii HOM05D003634 ORTHO05D004146 1.7e-67 259.6 183 73.8
vmacro08742 Vaccinium macrocarpon HOM05D003634 ORTHO05D004146 3.0e-67 258.8 183 74.3
VMungo0540G1926 Vigna mungo HOM05D003634 ORTHO05D004146 1.2e-65 253.4 183 72.7
Cpa.g.sc187.7 Carica papaya HOM05D003634 ORTHO05D004146 2.8e-65 252.3 183 71.0
Glyma.08G304200 Glycine max HOM05D003634 ORTHO05D004146 4.7e-65 251.5 183 71.6
Phvul.006G027801 Phaseolus vulgaris HOM05D003634 ORTHO05D004146 4.7e-65 251.5 183 72.1
Lj8C98T13 Lonicera japonica HOM05D003634 ORTHO05D004146 6.2e-65 251.1 183 72.1
AL1G16690 Arabidopsis lyrata HOM05D003634 ORTHO05D004146 8.0e-65 250.8 183 70.5
CiPaw.04G137000 Carya illinoinensis HOM05D003634 ORTHO05D004146 1.1e-64 250.4 183 71.6
Glyma.18G114900 Glycine max HOM05D003634 ORTHO05D004146 1.1e-64 250.4 183 71.0
Carub.0004s1200 Capsella rubella HOM05D003634 ORTHO05D004146 1.4e-64 250.0 183 70.5
CAN.G488.26 Capsicum annuum HOM05D003634 ORTHO05D004146 1.4e-64 250.0 183 69.4
Thhalv10017096m.g Eutrema salsugineum HOM05D003634 ORTHO05D004146 1.4e-64 250.0 183 69.9
Hma1.2p1_0571F.1_g180910 Hydrangea macrophylla HOM05D003634 ORTHO05D004146 1.4e-64 250.0 183 69.9
Lj1A651T46 Lonicera japonica HOM05D003634 ORTHO05D004146 1.4e-64 250.0 183 71.0
AL4G25720 Arabidopsis lyrata HOM05D003634 ORTHO05D004146 1.8e-64 249.6 183 70.5
Atru.chr6.2016 Acer truncatum HOM05D003634 ORTHO05D004146 2.3e-64 249.2 184 70.1
AT1G06680 Arabidopsis thaliana HOM05D003634 ORTHO05D004146 2.3e-64 249.2 183 69.9
Oeu056847.1 Olea europaea HOM05D003634 ORTHO05D004146 2.3e-64 249.2 183 71.6
CARHR124260 Cardamine hirsuta HOM05D003634 ORTHO05D004146 3.1e-64 248.8 183 69.9
Duzib264G1267 Durio zibethinus HOM05D003634 ORTHO05D004146 4.0e-64 248.4 183 70.5
ECA234G0286 Erigeron canadensis HOM05D003634 ORTHO05D004146 4.0e-64 248.4 183 69.9
BcaC02g11165 Brassica carinata HOM05D003634 ORTHO05D004146 5.2e-64 248.1 183 69.4
A05p14800 Brassica napus HOM05D003634 ORTHO05D004146 5.2e-64 248.1 183 69.4
C04p19800 Brassica napus HOM05D003634 ORTHO05D004146 5.2e-64 248.1 183 69.4
BolC4t23513H Brassica oleracea HOM05D003634 ORTHO05D004146 5.2e-64 248.1 183 69.4
CANSAT64G2967 Cannabis sativa HOM05D003634 ORTHO05D004146 5.2e-64 248.1 182 69.2
BraA05t20408Z Brassica rapa HOM05D003634 ORTHO05D004146 6.8e-64 247.7 183 69.4
BcaB02g10342 Brassica carinata HOM05D003634 ORTHO05D004146 1.2e-63 246.9 183 69.4
Ca_13941_v3 Cicer arietinum L. HOM05D003634 ORTHO05D004146 1.2e-63 246.9 183 69.9
Eucgr.A02039 Eucalyptus grandis HOM05D003634 ORTHO05D004146 2.0e-63 246.1 183 68.9
Lj6g0020294 Lotus japonicus HOM05D003634 ORTHO05D004146 2.0e-63 246.1 183 68.3
MBI02_g35794_MAGBIO Magnolia biondii HOM05D003634 ORTHO05D004146 2.0e-63 246.1 183 69.4
Prupe.3G179400 Prunus persica HOM05D003634 ORTHO05D004146 2.0e-63 246.1 183 69.9
Sc07g0004260 Simmondsia chinensis HOM05D003634 ORTHO05D004146 2.0e-63 246.1 183 69.9
Carub.0001s0601 Capsella rubella HOM05D003634 ORTHO05D004146 2.6e-63 245.7 183 68.3
Gohir.D04G034900 Gossypium hirsutum HOM05D003634 ORTHO05D004146 2.6e-63 245.7 183 68.3
Gorai.012G039400 Gossypium raimondii HOM05D003634 ORTHO05D004146 2.6e-63 245.7 183 68.3
Cfa023023 Carpinus fangiana HOM05D003634 ORTHO05D004146 3.4e-63 245.4 183 68.3
Gohir.A05G380700 Gossypium hirsutum HOM05D003634 ORTHO05D004146 3.4e-63 245.4 183 68.3
HanXRQChr05g0129681 Helianthus annuus HOM05D003634 ORTHO05D004146 3.4e-63 245.4 182 68.7
Phvul.008G196500 Phaseolus vulgaris HOM05D003634 ORTHO05D004146 3.4e-63 245.4 183 69.9
PGR142G4178 Punica granatum HOM05D003634 ORTHO05D004146 3.4e-63 245.4 183 68.3
Ah.03g147560 Amaranthus hybridus HOM05D003634 ORTHO05D004146 5.8e-63 244.6 183 67.8
EL10Ac6g15357 Beta vulgaris HOM05D003634 ORTHO05D004146 5.8e-63 244.6 183 67.2
Sp1g05410 Schrenkiella parvula HOM05D003634 ORTHO05D004146 5.8e-63 244.6 183 68.9
Aa31LG1G7720 Aethionema arabicum HOM05D003634 ORTHO05D004146 7.5e-63 244.2 183 68.3
C05p04870 Brassica napus HOM05D003634 ORTHO05D004146 7.5e-63 244.2 183 68.9
CAN.G212.2 Capsicum annuum HOM05D003634 ORTHO05D004146 7.5e-63 244.2 183 67.2
MBI18_g28201_MAGBIO Magnolia biondii HOM05D003634 ORTHO05D004146 1.3e-62 243.4 183 68.9
Medtr5g090410 Medicago truncatula HOM05D003634 ORTHO05D004146 1.3e-62 243.4 183 68.3
Potri.005G206700 Populus trichocarpa HOM05D003634 ORTHO05D004146 1.3e-62 243.4 183 68.9
Solyc07g044860.3 Solanum lycopersicum HOM05D003634 ORTHO05D004146 1.3e-62 243.4 183 67.2
Sopen07g023420 Solanum pennellii HOM05D003634 ORTHO05D004146 1.3e-62 243.4 183 67.2
C08p02670 Brassica napus HOM05D003634 ORTHO05D004146 1.7e-62 243.0 183 68.3
BolC8t47063H Brassica oleracea HOM05D003634 ORTHO05D004146 1.7e-62 243.0 183 68.3
THA.LOC104816082 Tarenaya hassleriana HOM05D003634 ORTHO05D004146 1.7e-62 243.0 183 68.3
GSVIVG01020818001 Vitis vinifera HOM05D003634 ORTHO05D004146 1.7e-62 243.0 182 66.5
arahy.Tifrunner.gnm1.ann1.MMUF9T Arachis hypogaea HOM05D003634 ORTHO05D004146 2.2e-62 242.7 183 68.9
COL.COLO4_29888 Corchorus olitorius HOM05D003634 ORTHO05D004146 2.2e-62 242.7 183 68.9
A10p05270 Brassica napus HOM05D003634 ORTHO05D004146 2.9e-62 242.3 183 68.3
BolC5t29259H Brassica oleracea HOM05D003634 ORTHO05D004146 2.9e-62 242.3 183 68.3
BraA10t42792Z Brassica rapa HOM05D003634 ORTHO05D004146 2.9e-62 242.3 183 68.3
MD17G1132900 Malus domestica HOM05D003634 ORTHO05D004146 2.9e-62 242.3 183 69.4
Psat2g018280 Pisum sativum HOM05D003634 ORTHO05D004146 2.9e-62 242.3 183 67.8
Potri.002G055700 Populus trichocarpa HOM05D003634 ORTHO05D004146 2.9e-62 242.3 183 69.4
TWI23G0402 Tripterygium wilfordii HOM05D003634 ORTHO05D004146 2.9e-62 242.3 183 68.3
arahy.Tifrunner.gnm1.ann1.TCR54Y Arachis hypogaea HOM05D003634 ORTHO05D004146 3.7e-62 241.9 183 68.9
DCAR_023039 Daucus carota HOM05D003634 ORTHO05D004146 3.7e-62 241.9 183 66.7
Psat5g189160 Pisum sativum HOM05D003634 ORTHO05D004146 3.7e-62 241.9 183 68.3
Ah.02g120770 Amaranthus hybridus HOM05D003634 ORTHO05D004146 4.9e-62 241.5 183 65.6
LjContig00049g0021127 Lotus japonicus HOM05D003634 ORTHO05D004146 4.9e-62 241.5 183 67.8
A08p35900 Brassica napus HOM05D003634 ORTHO05D004146 6.4e-62 241.1 183 67.8
BraA08t35497Z Brassica rapa HOM05D003634 ORTHO05D004146 6.4e-62 241.1 183 67.8
AUR62017838 Chenopodium quinoa HOM05D003634 ORTHO05D004146 6.4e-62 241.1 183 66.1
Medtr3g449930 Medicago truncatula HOM05D003634 ORTHO05D004146 6.4e-62 241.1 183 68.3
Peaxi162Scf00359g01218 Petunia axillaris HOM05D003634 ORTHO05D004146 6.4e-62 241.1 183 66.1
TPR.G8779 Trifolium pratense HOM05D003634 ORTHO05D004146 6.4e-62 241.1 183 67.8
arahy.Tifrunner.gnm1.ann1.30A6BG Arachis hypogaea HOM05D003634 ORTHO05D004146 1.1e-61 240.4 183 68.3
Thhalv10008504m.g Eutrema salsugineum HOM05D003634 ORTHO05D004146 1.1e-61 240.4 183 67.8
Lalb_Chr17g0348121 Lupinus albus HOM05D003634 ORTHO05D004146 1.1e-61 240.4 183 69.9
TPR.G14744 Trifolium pratense HOM05D003634 ORTHO05D004146 1.1e-61 240.4 182 67.6
Lalb_Chr04g0249011 Lupinus albus HOM05D003634 ORTHO05D004146 1.4e-61 240.0 183 69.9
Sabra05G0157200 Salix brachista HOM05D003634 ORTHO05D004146 1.4e-61 240.0 182 69.8
BcaNung05935 Brassica carinata HOM05D003634 ORTHO05D004146 1.9e-61 239.6 183 68.3
CSS0028528 Camellia sinensis var. sinensis HOM05D003634 ORTHO05D004146 1.9e-61 239.6 183 68.9
Thecc.01G166600 Theobroma cacao HOM05D003634 ORTHO05D004146 1.9e-61 239.6 183 67.8
Aqoxy1G01593 Aquilegia oxysepala HOM05D003634 ORTHO05D004146 2.4e-61 239.2 183 66.7
AUR62003524 Chenopodium quinoa HOM05D003634 ORTHO05D004146 2.4e-61 239.2 183 64.5
CARHR006360 Cardamine hirsuta HOM05D003634 ORTHO05D004146 3.2e-61 238.8 183 65.6
Cc05_g00840 Coffea canephora HOM05D003634 ORTHO05D004146 3.2e-61 238.8 183 65.0
Lalb_Chr10g0106481 Lupinus albus HOM05D003634 ORTHO05D004146 4.1e-61 238.4 183 69.4
TWI14G0595 Tripterygium wilfordii HOM05D003634 ORTHO05D004146 4.1e-61 238.4 183 67.8
Glyma.02G282500 Glycine max HOM05D003634 ORTHO05D004146 5.4e-61 238.0 183 67.2
Glyma.14G031800 Glycine max HOM05D003634 ORTHO05D004146 5.4e-61 238.0 183 67.2
Hund04362 Selenicereus undatus HOM05D003634 ORTHO05D004146 5.4e-61 238.0 183 66.7
Nitab4.5_0000019g0250 Nicotiana tabacum HOM05D003634 ORTHO05D004146 7.1e-61 237.7 183 65.0
THA.LOC104826247 Tarenaya hassleriana HOM05D003634 ORTHO05D004146 7.1e-61 237.7 183 67.2
MSTRG.14106 Avicennia marina HOM05D003634 ORTHO05D004146 9.2e-61 237.3 183 66.7
DCAR_009820 Daucus carota HOM05D003634 ORTHO05D004146 9.2e-61 237.3 183 66.1
MD09G1146300 Malus domestica HOM05D003634 ORTHO05D004146 9.2e-61 237.3 183 67.8
Nitab4.5_0006644g0080 Nicotiana tabacum HOM05D003634 ORTHO05D004146 9.2e-61 237.3 182 66.5
arahy.Tifrunner.gnm1.ann1.1944SK Arachis hypogaea HOM05D003634 ORTHO05D004146 1.2e-60 236.9 180 67.8
QL08p045530 Quercus lobata HOM05D003634 ORTHO05D004146 1.2e-60 236.9 182 67.0
Sabra02G0045200 Salix brachista HOM05D003634 ORTHO05D004146 1.2e-60 236.9 183 66.7
SGA_v2.0_scaffold49G18386 Striga asiatica HOM05D003634 ORTHO05D004146 1.2e-60 236.9 182 67.0
Lsat_1_v5_gn_3_35220 Lactuca sativa HOM05D003634 ORTHO05D004146 1.6e-60 236.5 205 62.0
SalBow7G4383 Salvia bowleyana HOM05D003634 ORTHO05D004146 1.6e-60 236.5 182 68.1
BcaC07g42054 Brassica carinata HOM05D003634 ORTHO05D004146 2.1e-60 236.1 183 66.7
A09p66850 Brassica napus HOM05D003634 ORTHO05D004146 2.1e-60 236.1 183 66.7
C08p51070 Brassica napus HOM05D003634 ORTHO05D004146 2.1e-60 236.1 183 66.7
BolC8t52634H Brassica oleracea HOM05D003634 ORTHO05D004146 2.1e-60 236.1 183 66.7
BraA09t42022Z Brassica rapa HOM05D003634 ORTHO05D004146 2.1e-60 236.1 183 66.7
CDE04G2981 Ceratophyllum demersum HOM05D003634 ORTHO05D004146 2.1e-60 236.1 183 67.8
Manes.02G089900 Manihot esculenta HOM05D003634 ORTHO05D004146 2.1e-60 236.1 183 66.7
ClCG07G010800 Citrullus lanatus HOM05D003634 ORTHO05D004146 3.5e-60 235.3 183 63.9
Manes.01G131300 Manihot esculenta HOM05D003634 ORTHO05D004146 3.5e-60 235.3 183 66.7
Os07g0141400 Oryza sativa ssp. japonica HOM05D003634 ORTHO05D004146 3.5e-60 235.3 183 64.5
PGSC0003DMG400000926 Solanum tuberosum HOM05D003634 ORTHO05D004146 3.5e-60 235.3 203 60.6
MSTRG.12265 Avicennia marina HOM05D003634 ORTHO05D004146 6.0e-60 234.6 183 65.6
Haze_13608 Corylus avellana HOM05D003634 ORTHO05D004146 7.8e-60 234.2 177 67.8
Nitab4.5_0005601g0020 Nicotiana tabacum HOM05D003634 ORTHO05D004146 7.8e-60 234.2 182 65.4
Oeu012357.1 Olea europaea HOM05D003634 ORTHO05D004146 7.8e-60 234.2 183 65.6
arahy.Tifrunner.gnm1.ann1.0DED4Z Arachis hypogaea HOM05D003634 ORTHO05D004146 1.0e-59 233.8 191 66.0
MELO3C016190.2 Cucumis melo HOM05D003634 ORTHO05D004146 1.0e-59 233.8 183 64.5
Ciclev10032502m.g Citrus clementina HOM05D003634 ORTHO05D004146 1.3e-59 233.4 181 66.9
FAN05G3719 Fragaria x ananassa HOM05D003634 ORTHO05D004146 1.3e-59 233.4 183 65.6
FvH4_6g38900 Fragaria vesca HOM05D003634 ORTHO05D004146 1.7e-59 233.0 183 65.6
RcHm_v2.0_Chr2g0152481 Rosa chinensis HOM05D003634 ORTHO05D004146 2.3e-59 232.6 183 65.6
FAN14G5409 Fragaria x ananassa HOM05D003634 ORTHO05D004146 3.0e-59 232.3 183 65.6
CsaV3_4G007520 Cucumis sativus L. HOM05D003634 ORTHO05D004146 5.1e-59 231.5 183 63.9
HPP92_015688 Vanilla planifolia HOM05D003634 ORTHO05D004146 5.1e-59 231.5 187 65.2
Migut.H01272 Erythranthe guttata HOM05D003634 ORTHO05D004146 6.6e-59 231.1 183 63.9
Nitab4.5_0008321g0040 Nicotiana tabacum HOM05D003634 ORTHO05D004146 8.6e-59 230.7 175 66.3
Aa31LG5G6070 Aethionema arabicum HOM05D003634 ORTHO05D004146 1.1e-58 230.3 204 61.3
ECA246G2888 Erigeron canadensis HOM05D003634 ORTHO05D004146 1.1e-58 230.3 183 66.1
SEGI_24342 Sequoiadendron giganteum HOM05D003634 ORTHO05D004146 1.1e-58 230.3 183 64.5
THA.LOC104800813 Tarenaya hassleriana HOM05D003634 ORTHO05D004146 1.1e-58 230.3 183 66.1
PGR042G1985 Punica granatum HOM05D003634 ORTHO05D004146 1.5e-58 229.9 176 68.2
FAN02G0185 Fragaria x ananassa HOM05D003634 ORTHO05D004146 2.5e-58 229.2 183 65.0
FAN09G2615 Fragaria x ananassa HOM05D003634 ORTHO05D004146 2.5e-58 229.2 183 64.5
Sed0027030 Sechium edule HOM05D003634 ORTHO05D004146 2.5e-58 229.2 183 62.8
CDE12G0092 Ceratophyllum demersum HOM05D003634 ORTHO05D004146 3.3e-58 228.8 183 65.6
Sed0008663 Sechium edule HOM05D003634 ORTHO05D004146 3.3e-58 228.8 183 63.4
unitig_8.g4601 Utricularia gibba HOM05D003634 ORTHO05D004146 3.3e-58 228.8 183 65.6
ATR0681G398 Amborella trichopoda HOM05D003634 ORTHO05D004146 1.2e-57 226.9 174 66.7
HanXRQChr06g0171591 Helianthus annuus HOM05D003634 ORTHO05D004146 1.2e-57 226.9 183 65.0
HanXRQChr04g0099261 Helianthus annuus HOM05D003634 ORTHO05D004146 2.8e-57 225.7 183 65.6
BcaC07g36796 Brassica carinata HOM05D003634 ORTHO05D004146 4.7e-57 224.9 166 68.1
Zm00001eb117670 Zea mays HOM05D003634 ORTHO05D004146 1.4e-56 223.4 183 62.8
Migut.M00114 Erythranthe guttata HOM05D003634 ORTHO05D004146 2.3e-56 222.6 183 63.4
Zm00001eb299760 Zea mays HOM05D003634 ORTHO05D004146 8.9e-56 220.7 183 61.7
unitig_52.g17321 Utricularia gibba HOM05D003634 ORTHO05D004146 1.7e-54 216.5 183 61.7
VMungo0647G2531 Vigna mungo HOM05D003634 ORTHO05D004146 2.2e-54 216.1 163 68.7
PSO541G1729 Papaver somniferum HOM05D003634 ORTHO05D004146 4.9e-54 214.9 183 62.3
PSO675G5089 Papaver somniferum HOM05D003634 ORTHO05D004146 4.9e-54 214.9 183 62.3
Pp3c2_23590 Physcomitrium patens HOM05D003634 ORTHO05D004146 3.3e-50 202.2 183 55.7
SMO276G0004 Selaginella moellendorffii HOM05D003634 ORTHO05D004146 2.8e-49 199.1 183 56.3
Mapoly0094s0007 Marchantia polymorpha HOM05D003634 ORTHO05D004146 1.4e-48 196.8 183 55.2
Pp3c11_12080 Physcomitrium patens HOM05D003634 ORTHO05D004146 5.8e-47 191.4 183 53.6
Pp3c1_16780 Physcomitrium patens HOM05D003634 ORTHO05D004146 9.9e-47 190.7 183 53.6
Pp3c7_12850 Physcomitrium patens HOM05D003634 ORTHO05D004146 9.9e-47 190.7 183 53.0
Mapoly0058s0006 Marchantia polymorpha HOM05D003634 ORTHO05D004146 1.9e-45 186.4 183 53.0
Mapoly0058s0007 Marchantia polymorpha HOM05D003634 ORTHO05D004146 5.4e-45 184.9 182 52.2
Pp3c11_11560 Physcomitrium patens HOM05D003634 ORTHO05D004146 9.0e-40 167.5 185 49.2
CBR_g259 Chara braunii HOM05D003634 ORTHO05D004146 5.8e-39 164.9 184 48.4
Cre12.g550850 Chlamydomonas reinhardtii HOM05D003634 ORTHO05D004146 1.7e-35 153.3 185 45.4
AT2G30790 Arabidopsis thaliana HOM05D003634 ORTHO05D004146 2.5e-34 149.4 126 66.7
PRCOL_00005580 Prasinoderma coloniale HOM05D003634 ORTHO05D004146 5.6e-34 148.3 188 47.3
MCO12G360 Micromonas commoda HOM05D003634 ORTHO05D004146 1.3e-33 147.1 183 42.6
Dinv20234 Davidia involucrata HOM05D003634 ORTHO05D004146 5.1e-27 125.2 68 83.8
Nn7g37873 Nelumbo nucifera HOM05D003634 ORTHO05D004146 4.3e-26 122.1 94 61.7
Actinidia12528 Actinidia chinensis HOM05D003634 ORTHO05D004146 5.6e-26 121.7 85 78.8
Oeu056845.1 Olea europaea HOM05D003634 ORTHO05D004146 2.1e-25 119.8 91 63.7
PGSC0003DMG400031395 Solanum tuberosum HOM05D003634 ORTHO05D004146 6.2e-25 118.2 90 62.2
unitig_578.g16007 Utricularia gibba HOM05D003634 ORTHO05D004146 1.0e-19 100.9 81 65.4
Pp3c11_14700 Physcomitrium patens HOM05D003634 ORTHO05D004146 2.8e-17 92.8 103 53.4
Sp4g13290 Schrenkiella parvula HOM05D003634 ORTHO05D004146 9.0e-16 87.8 54 79.6
AagrBONN_evm.TU.Sc2ySwM_228.465 Anthoceros agrestis HOM05D003634 ORTHO05D004146 1.7e-14 83.6 67 55.2
PRCOL_00002970 Prasinoderma coloniale HOM05D003634 ORTHO05D004146 4.1e-08 62.4 164 32.3


User provided reference genes

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