Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.0e-189 667.2 500 100.0
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 1.6e-113 414.1 369 64.8
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.0e-100 370.5 533 54.6
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 1.2e-92 344.7 524 55.7
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 5.2e-69 266.2 506 51.6
Actinidia24231 Actinidia chinensis HOM05D007535 ORTHO05D008520 4.6e-65 253.1 192 76.6
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 6.8e-61 239.2 313 48.6
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 8.9e-61 238.8 312 48.4
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 5.3e-53 213.0 514 50.0
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 2.4e-50 204.1 509 55.4
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 1.9e-47 194.5 515 53.0
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 1.4e-45 188.3 509 53.4
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 2.0e-44 184.5 143 72.7
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 2.4e-42 177.6 364 37.4
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 1.2e-41 175.3 504 51.0
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 2.1e-41 174.5 302 45.4
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 1.0e-40 172.2 506 50.4
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 1.3e-40 171.8 539 50.5
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 1.3e-40 171.8 506 53.4
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 2.3e-40 171.0 507 44.8
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 3.0e-40 170.6 526 51.0
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 5.1e-40 169.9 527 50.9
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 6.7e-40 169.5 515 51.7
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 8.7e-40 169.1 501 52.1
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 1.5e-39 168.3 302 38.7
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 1.5e-39 168.3 505 49.1
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 2.5e-39 167.5 508 48.8
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 3.3e-39 167.2 364 36.0
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 5.6e-39 166.4 503 51.1
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 1.6e-38 164.9 560 50.2
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 4.8e-38 163.3 508 52.2
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 8.1e-38 162.5 515 48.2
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 1.1e-37 162.2 504 49.6
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 5.3e-37 159.8 513 48.3
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 2.0e-36 157.9 508 51.2
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 2.6e-36 157.5 532 46.2
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 2.6e-36 157.5 369 36.3
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 3.4e-36 157.1 506 52.0
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 5.8e-36 156.4 505 43.0
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 2.9e-35 154.1 504 49.8
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 3.8e-35 153.7 502 53.2
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 1.9e-34 151.4 506 42.5
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 2.5e-34 151.0 502 44.4
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 3.2e-34 150.6 503 47.7
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 4.2e-34 150.2 505 51.7
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 7.1e-34 149.4 516 51.7
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 1.2e-33 148.7 503 45.7
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 2.7e-33 147.5 501 49.9
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 3.5e-33 147.1 324 35.5
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.0e-32 145.6 308 37.3
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 1.3e-32 145.2 506 41.3
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 3.0e-32 144.1 504 50.8
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 3.9e-32 143.7 296 36.5
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 3.9e-32 143.7 502 50.4
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 7.4e-31 139.4 502 50.0
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 4.8e-30 136.7 501 49.7
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 1.4e-29 135.2 514 44.4
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 1.4e-29 135.2 217 44.2
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 3.1e-29 134.0 370 31.4
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 3.1e-29 134.0 506 44.9
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 3.1e-29 134.0 504 49.4
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 5.9e-28 129.8 296 34.8
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 5.9e-28 129.8 505 45.7
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 7.6e-28 129.4 268 62.3
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 2.9e-27 127.5 501 48.9
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 5.0e-27 126.7 505 45.5
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 1.1e-26 125.6 499 47.7
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 4.2e-26 123.6 506 48.0
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 7.2e-26 122.9 298 35.2
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 7.9e-25 119.4 506 50.4
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 1.8e-24 118.2 505 45.5
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.1e-23 115.5 320 31.9
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 1.5e-23 115.2 296 33.1
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 2.5e-23 114.4 300 34.3
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 1.6e-22 111.7 237 37.6
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 1.6e-22 111.7 502 48.6
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 2.8e-22 110.9 294 36.1
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 4.8e-22 110.2 308 34.1
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 1.4e-21 108.6 504 48.2
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 1.4e-21 108.6 504 45.6
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 2.2e-19 101.3 501 47.5
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 3.8e-19 100.5 371 50.4
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 5.0e-19 100.1 351 29.6
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 5.0e-19 100.1 503 46.5
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 1.4e-18 98.6 242 38.8
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 1.8e-16 91.7 493 49.1
AUR62020256 Chenopodium quinoa HOM05D007535 ORTHO05D008520 6.7e-16 89.7 104 50.0
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 5.7e-15 86.7 501 46.5
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 3.7e-14 84.0 297 27.6
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 6.3e-14 83.2 291 66.7
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 6.9e-13 79.7 290 65.2
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 9.1e-13 79.3 302 31.5
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 3.4e-12 77.4 506 38.7
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 4.5e-12 77.0 274 68.2
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 4.5e-12 77.0 274 68.2
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 4.5e-12 77.0 93 46.2
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 1.7e-11 75.1 274 67.9
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 1.4e-10 72.0 129 47.3
Hma1.2p1_2164F.1_g315720 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 4.2e-10 70.5 46 78.3
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.6e-09 68.6 398 52.5
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 3.6e-09 67.4 91 40.7
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 6.1e-09 66.6 382 54.5
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 7.9e-09 66.2 46 69.6
CSS0011293 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 2.3e-08 64.7 42 76.2
Nitab4.5_0001640g0010 Nicotiana tabacum HOM05D007535 ORTHO05D008520 5.1e-08 63.5 158 34.2
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 6.7e-08 63.2 281 65.8
Mapoly0097s0057 Marchantia polymorpha HOM05D022173 ORTHO05D008520 2.0e-07 61.6 89 37.1
BcaB08g36440 Brassica carinata HOM05D012474 ORTHO05D008520 2.6e-07 61.2 297 24.2
Sp6g22920 Schrenkiella parvula HOM05D012474 ORTHO05D008520 3.3e-07 60.8 300 26.7
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 1.3e-06 58.9 502 45.0
CANSAT78G2361 Cannabis sativa HOM05D000107 ORTHO05D000062 4.8e-06 57.0 44 61.4
CSS0011895 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 6.3e-06 56.6 39 74.4


User provided reference genes

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