Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 5.4e-102 374.4 199 100.0
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 8.2e-58 227.6 219 61.6
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 4.7e-53 211.8 253 54.5
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 7.9e-53 211.1 207 58.9
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 3.7e-50 202.2 213 61.0
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 2.4e-49 199.5 239 54.8
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 5.3e-49 198.4 182 62.1
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 1.2e-48 197.2 206 55.8
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 1.6e-48 196.8 209 55.5
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 5.9e-48 194.9 212 59.4
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 5.9e-48 194.9 218 60.1
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 1.0e-47 194.1 210 54.3
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 2.9e-47 192.6 181 61.3
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 5.0e-47 191.8 182 62.6
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 1.1e-46 190.7 215 56.3
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 1.5e-46 190.3 193 57.0
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 1.9e-46 189.9 180 58.9
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 2.5e-46 189.5 207 59.9
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 3.2e-46 189.1 180 62.2
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 1.6e-45 186.8 185 56.2
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 3.6e-45 185.7 218 53.7
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 4.7e-45 185.3 198 53.5
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.0e-44 184.1 185 56.8
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.8e-44 183.3 182 58.2
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 2.3e-44 183.0 178 59.0
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 2.3e-44 183.0 194 53.1
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 2.3e-44 183.0 180 57.2
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 2.3e-44 183.0 205 55.6
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 4.0e-44 182.2 176 59.1
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 4.0e-44 182.2 182 58.2
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 4.0e-44 182.2 199 54.3
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 5.2e-44 181.8 182 57.7
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 5.2e-44 181.8 183 56.8
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 1.5e-43 180.3 216 50.5
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 2.0e-43 179.9 210 52.9
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 2.6e-43 179.5 202 54.0
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 3.3e-43 179.1 216 51.9
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 4.4e-43 178.7 180 55.6
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 1.3e-42 177.2 158 60.1
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 4.8e-42 175.3 161 60.2
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 1.1e-41 174.1 212 56.6
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 1.1e-41 174.1 210 57.6
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 1.4e-41 173.7 172 55.8
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 1.8e-41 173.3 214 50.0
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 1.8e-41 173.3 173 63.6
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 1.6e-40 170.2 199 52.8
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 2.7e-40 169.5 178 54.5
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 5.9e-40 168.3 203 51.7
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 5.9e-40 168.3 215 52.1
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 5.9e-40 168.3 178 53.9
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 7.7e-40 167.9 178 53.9
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 1.7e-39 166.8 202 50.0
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.7e-39 166.8 117 71.8
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.9e-39 166.0 205 47.8
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 2.9e-39 166.0 167 60.5
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 3.8e-39 165.6 165 54.5
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 5.0e-39 165.2 213 52.1
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.0e-39 165.2 205 47.8
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 5.0e-39 165.2 204 49.5
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 8.5e-39 164.5 203 54.7
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 8.5e-39 164.5 114 73.7
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.1e-38 164.1 205 47.8
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 1.1e-38 164.1 177 54.2
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.5e-38 163.7 205 47.8
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 1.9e-38 163.3 98 78.6
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 1.9e-38 163.3 219 47.5
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 2.5e-38 162.9 167 57.5
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 4.2e-38 162.2 211 48.8
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 7.2e-38 161.4 219 46.6
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 7.2e-38 161.4 178 49.4
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 9.4e-38 161.0 213 53.1
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 9.4e-38 161.0 211 53.6
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 9.4e-38 161.0 219 50.2
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 1.6e-37 160.2 218 47.7
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 1.6e-37 160.2 218 47.7
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 1.6e-37 160.2 218 47.7
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.6e-37 160.2 110 70.9
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 1.6e-37 160.2 190 56.8
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 2.1e-37 159.8 211 53.6
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 3.6e-37 159.1 217 46.5
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 8.0e-37 157.9 216 50.0
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 8.0e-37 157.9 216 50.0
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 8.0e-37 157.9 211 53.1
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 8.0e-37 157.9 205 49.8
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.0e-37 157.9 205 49.8
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 1.0e-36 157.5 213 48.8
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.0e-36 157.5 217 49.3
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 3.0e-36 156.0 204 46.1
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 5.2e-36 155.2 218 46.8
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 5.2e-36 155.2 231 46.8
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 1.2e-35 154.1 213 46.9
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 2.6e-35 152.9 213 48.4
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 3.4e-35 152.5 221 46.6
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 1.7e-34 150.2 215 47.4
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 8.3e-34 147.9 233 44.6
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 1.2e-32 144.1 154 53.2
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.7e-32 142.9 90 75.6
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 2.2e-31 139.8 204 46.6
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.9e-31 139.4 222 41.4
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 5.0e-31 138.7 94 70.2
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 1.1e-30 137.5 98 71.4
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 1.1e-30 137.5 98 71.4
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 1.1e-30 137.5 98 71.4
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.5e-30 137.1 127 59.8
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 2.5e-30 136.3 111 65.8
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.6e-29 133.7 143 51.0
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 1.8e-28 130.2 104 60.6
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 8.3e-26 121.3 194 41.8
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.3e-23 113.2 190 41.1
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.1e-22 110.9 195 38.5
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.6e-22 108.6 68 69.1
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.2e-21 107.5 84 58.3
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 2.1e-21 106.7 86 59.3
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.3e-20 103.2 94 55.3
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.3e-20 103.2 94 55.3
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 4.4e-19 99.0 85 58.8
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 5.7e-19 98.6 183 41.0
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 2.2e-18 96.7 182 40.1
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 6.4e-18 95.1 109 48.6
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 8.3e-18 94.7 113 41.6
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 5.0e-15 85.5 126 53.2
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 5.0e-15 85.5 86 50.0
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 5.0e-15 85.5 86 50.0
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 5.6e-14 82.0 67 68.7
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 3.7e-10 69.3 50 54.0
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 2.4e-09 66.6 49 53.1
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 3.5e-08 62.8 104 35.6
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.3e-07 60.8 102 34.3
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 1.7e-07 60.5 65 53.8
A05p27070 Brassica napus HOM05D005829 ORTHO05D007246 2.3e-07 60.1 46 63.0
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 3.0e-07 59.7 105 35.2
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 8.6e-07 58.2 112 33.0
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 3.3e-06 56.2 39 61.5


User provided reference genes

Program Settings