Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia06910 Actinidia chinensis HOM05D007890 ORTHO05D009945 1.7e-97 359.4 190 100.0
Dinv36254 Davidia involucrata HOM05D007890 ORTHO05D009945 2.1e-39 166.4 180 55.0
Rhsim13G0220700 Rhododendron simsii HOM05D007890 ORTHO05D009945 5.5e-35 151.8 151 55.0
vmacro04152 Vaccinium macrocarpon HOM05D007890 ORTHO05D009945 2.1e-34 149.8 165 53.3
Hma1.2p1_0606F.1_g188050 Hydrangea macrophylla HOM05D007890 ORTHO05D009945 2.3e-33 146.4 180 53.3
Nitab4.5_0002741g0090 Nicotiana tabacum HOM05D007890 ORTHO05D009945 1.7e-28 130.2 175 47.4
Oeu025872.1 Olea europaea HOM05D007890 ORTHO05D009945 3.2e-27 125.9 167 48.5
QL01p004625 Quercus lobata HOM05D007890 ORTHO05D009945 5.1e-25 118.6 100 62.0
Peaxi162Scf00004g02526 Petunia axillaris HOM05D007890 ORTHO05D009945 8.7e-25 117.9 113 54.9
PGSC0003DMG400033336 Solanum tuberosum HOM05D007890 ORTHO05D009945 3.3e-24 115.9 149 45.6
Solyc11g065680.1 Solanum lycopersicum HOM05D007890 ORTHO05D009945 5.7e-24 115.2 149 47.0
Sopen11g025420 Solanum pennellii HOM05D007890 ORTHO05D009945 5.7e-24 115.2 149 47.0
TAR633G1231 Trochodendron aralioides HOM05D007890 ORTHO05D009945 5.7e-24 115.2 182 45.6
SalBow5G2971 Salvia bowleyana HOM05D007890 ORTHO05D009945 9.7e-24 114.4 126 52.4
MSTRG.17595 Avicennia marina HOM05D007890 ORTHO05D009945 1.1e-22 110.9 111 54.1
Lj1P329T66 Lonicera japonica HOM05D007890 ORTHO05D009945 1.2e-21 107.5 107 57.0
Potri.001G257400 Populus trichocarpa HOM05D007890 ORTHO05D009945 2.0e-21 106.7 123 50.4
MD03G1174000 Malus domestica HOM05D007890 ORTHO05D009945 2.6e-21 106.3 162 46.9
MD11G1192200 Malus domestica HOM05D007890 ORTHO05D009945 2.6e-21 106.3 133 49.6
EL10Ac4g10243 Beta vulgaris HOM05D007890 ORTHO05D009945 3.4e-21 105.9 117 51.3
Ah.06g194130 Amaranthus hybridus HOM05D007890 ORTHO05D009945 1.3e-20 104.0 125 50.4
Duzib170G0138 Durio zibethinus HOM05D007890 ORTHO05D009945 3.8e-20 102.4 108 55.6
Aqoxy2G00189 Aquilegia oxysepala HOM05D007890 ORTHO05D009945 5.0e-20 102.1 106 54.7
FAN21G3432 Fragaria x ananassa HOM05D007890 ORTHO05D009945 6.5e-20 101.7 142 45.8
Cfa009778 Carpinus fangiana HOM05D007890 ORTHO05D009945 1.1e-19 100.9 99 57.6
FAN16G0819 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.1e-19 100.9 142 45.8
Manes.13G093240 Manihot esculenta HOM05D007890 ORTHO05D009945 4.2e-19 99.0 139 45.3
RcHm_v2.0_Chr5g0052301 Rosa chinensis HOM05D007890 ORTHO05D009945 4.2e-19 99.0 95 62.1
Migut.N02322 Erythranthe guttata HOM05D007890 ORTHO05D009945 9.4e-19 97.8 117 52.1
CiPaw.13G159700 Carya illinoinensis HOM05D007890 ORTHO05D009945 1.6e-18 97.1 181 42.5
FvH4_3g28750 Fragaria vesca HOM05D007890 ORTHO05D009945 4.6e-18 95.5 113 49.6
FAN11G2622 Fragaria x ananassa HOM05D007890 ORTHO05D009945 4.6e-18 95.5 113 49.6
Lsat_1_v5_gn_2_29200 Lactuca sativa HOM05D007890 ORTHO05D009945 4.6e-18 95.5 130 47.7
GSVIVG01025250001 Vitis vinifera HOM05D007890 ORTHO05D009945 4.6e-18 95.5 144 46.5
Gohir.A05G069600 Gossypium hirsutum HOM05D007890 ORTHO05D009945 2.3e-17 93.2 105 52.4
Gohir.D05G072500 Gossypium hirsutum HOM05D007890 ORTHO05D009945 2.3e-17 93.2 105 52.4
Gorai.009G073500 Gossypium raimondii HOM05D007890 ORTHO05D009945 2.3e-17 93.2 158 43.0
TWI32G0791 Tripterygium wilfordii HOM05D007890 ORTHO05D009945 3.0e-17 92.8 102 55.9
PSO423G0105 Papaver somniferum HOM05D007890 ORTHO05D009945 8.8e-17 91.3 132 44.7
PSO724G0038 Papaver somniferum HOM05D007890 ORTHO05D009945 8.8e-17 91.3 120 48.3
Atru.chr3.2706 Acer truncatum HOM05D007890 ORTHO05D009945 1.1e-16 90.9 169 36.7
ClCG02G023170 Citrullus lanatus HOM05D007890 ORTHO05D009945 1.1e-16 90.9 88 53.4
CsaV3_6G039340 Cucumis sativus L. HOM05D007890 ORTHO05D009945 3.3e-16 89.4 136 43.4
Sed0013757 Sechium edule HOM05D007890 ORTHO05D009945 4.3e-16 89.0 95 47.4
Thecc.09G234600 Theobroma cacao HOM05D007890 ORTHO05D009945 4.3e-16 89.0 93 53.8
MELO3C014589.2 Cucumis melo HOM05D007890 ORTHO05D009945 7.4e-16 88.2 110 47.3
HanXRQChr08g0209341 Helianthus annuus HOM05D007890 ORTHO05D009945 2.8e-15 86.3 111 45.0
Sabra16G0157400 Salix brachista HOM05D007890 ORTHO05D009945 2.8e-15 86.3 160 38.1
Lalb_Chr15g0082521 Lupinus albus HOM05D007890 ORTHO05D009945 4.8e-15 85.5 133 40.6
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 4.8e-15 85.5 117 42.7
Ciclev10016956m.g Citrus clementina HOM05D007890 ORTHO05D009945 6.3e-15 85.1 125 42.4
Eucgr.B03690 Eucalyptus grandis HOM05D007890 ORTHO05D009945 8.2e-15 84.7 131 45.0
Prupe.4G250100 Prunus persica HOM05D007890 ORTHO05D009945 8.2e-15 84.7 104 48.1
THA.LOC104801952 Tarenaya hassleriana HOM05D007890 ORTHO05D009945 8.2e-15 84.7 107 50.5
Psat5g163960 Pisum sativum HOM05D007890 ORTHO05D009945 3.1e-14 82.8 139 40.3
AT2G01870 Arabidopsis thaliana HOM05D007890 ORTHO05D009945 4.1e-14 82.4 131 43.5
Glyma.08G336100 Glycine max HOM05D007890 ORTHO05D009945 5.3e-14 82.0 141 40.4
Medtr3g061480 Medicago truncatula HOM05D007890 ORTHO05D009945 6.9e-14 81.6 93 47.3
unitig_22.g5692 Utricularia gibba HOM05D007890 ORTHO05D009945 1.2e-13 80.9 125 42.4
arahy.Tifrunner.gnm1.ann1.SWS7SX Arachis hypogaea HOM05D007890 ORTHO05D009945 2.0e-13 80.1 115 45.2
CARHR144430 Cardamine hirsuta HOM05D007890 ORTHO05D009945 2.0e-13 80.1 124 46.0
Lj6g0024098 Lotus japonicus HOM05D007890 ORTHO05D009945 2.0e-13 80.1 104 45.2
Carub.0005s0083 Capsella rubella HOM05D007890 ORTHO05D009945 5.9e-13 78.6 125 46.4
Phvul.006G062000 Phaseolus vulgaris HOM05D007890 ORTHO05D009945 5.9e-13 78.6 103 46.6
arahy.Tifrunner.gnm1.ann1.I2HDTW Arachis hypogaea HOM05D007890 ORTHO05D009945 7.7e-13 78.2 115 44.3
CSS0004739 Camellia sinensis var. sinensis HOM05D007890 ORTHO05D009945 1.3e-12 77.4 67 56.7
A06p43960 Brassica napus HOM05D001297 ORTHO05D001135 2.9e-12 76.3 118 47.5
BraA06t27271Z Brassica rapa HOM05D001297 ORTHO05D001135 2.9e-12 76.3 118 47.5
ECA233G3563 Erigeron canadensis HOM05D000013 ORTHO05D004590 5.0e-12 75.5 137 42.3
BcaC06g31267 Brassica carinata HOM05D007890 ORTHO05D009945 6.5e-12 75.1 127 47.2
AL5G10980 Arabidopsis lyrata HOM05D007890 ORTHO05D009945 8.5e-12 74.7 139 41.7
Sp2g13290 Schrenkiella parvula HOM05D007890 ORTHO05D009945 8.5e-12 74.7 124 43.5
BcaC06g34102 Brassica carinata HOM05D007890 ORTHO05D009945 1.4e-11 73.9 130 44.6
C07p32670 Brassica napus HOM05D001297 ORTHO05D001135 1.4e-11 73.9 130 44.6
BolC7t43788H Brassica oleracea HOM05D001297 ORTHO05D001135 1.9e-11 73.6 131 44.3
MBI02_g09445_MAGBIO Magnolia biondii HOM05D007890 ORTHO05D009945 4.2e-11 72.4 161 37.3
Aa31LG2G8040 Aethionema arabicum HOM05D007890 ORTHO05D009945 5.5e-11 72.0 96 47.9
Cpa.g.sc84.47 Carica papaya HOM05D007890 ORTHO05D009945 5.5e-11 72.0 191 34.0
VMungo0540G1907 Vigna mungo HOM05D007890 ORTHO05D009945 5.5e-11 72.0 116 42.2
CDE05G2272 Ceratophyllum demersum HOM05D007890 ORTHO05D009945 1.2e-10 70.9 157 35.0
Thhalv10005015m.g Eutrema salsugineum HOM05D007890 ORTHO05D009945 1.2e-10 70.9 116 45.7
Nn2g15343 Nelumbo nucifera HOM05D007890 ORTHO05D009945 1.1e-08 64.3 171 32.7
Nitab4.5_0001587g0050 Nicotiana tabacum HOM05D007890 ORTHO05D009945 2.6e-08 63.2 80 51.2
TAR633G1577 Trochodendron aralioides HOM05D007890 ORTHO05D009945 3.3e-08 62.8 75 48.0
Zm00001eb107210 Zea mays HOM05D054782 ORTHO05D009945 1.8e-06 57.0 123 34.1


User provided reference genes

Program Settings