Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 4.2e-105 384.8 206 100.0
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 6.7e-87 324.3 206 86.4
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 3.2e-73 278.9 216 74.1
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.8e-71 273.1 207 74.4
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.3e-71 272.7 207 75.8
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 3.0e-71 272.3 211 73.9
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 3.9e-71 271.9 212 73.1
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 4.3e-70 268.5 205 74.6
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 5.7e-70 268.1 205 74.6
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.6e-69 266.5 205 73.7
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 1.6e-69 266.5 207 72.9
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 3.7e-69 265.4 205 74.6
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 5.3e-68 261.5 227 67.4
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 9.1e-68 260.8 214 73.8
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 1.5e-67 260.0 207 72.5
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 2.6e-67 259.2 206 72.3
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 3.4e-67 258.8 206 71.8
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 5.9e-67 258.1 209 71.8
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 1.7e-66 256.5 230 67.4
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 2.2e-66 256.1 222 68.9
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 1.1e-65 253.8 219 68.0
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 1.4e-65 253.4 204 69.6
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.4e-65 253.4 207 69.1
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 1.9e-65 253.1 205 69.3
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 3.2e-65 252.3 201 72.6
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 4.2e-65 251.9 207 69.1
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 9.4e-65 250.8 201 72.6
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 1.6e-64 250.0 204 70.1
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 6.1e-64 248.1 219 68.5
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 1.0e-63 247.3 221 67.4
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 1.4e-63 246.9 173 78.0
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 1.8e-63 246.5 212 68.4
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 5.1e-63 245.0 146 89.7
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 2.0e-62 243.0 221 66.1
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 4.4e-62 241.9 213 64.3
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 5.7e-62 241.5 245 62.0
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 2.2e-61 239.6 216 66.7
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 2.8e-61 239.2 207 68.1
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 2.8e-61 239.2 210 67.6
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 1.4e-60 236.9 213 65.7
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 2.4e-60 236.1 211 67.8
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.0e-59 233.0 204 66.2
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 2.6e-59 232.6 205 67.3
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 3.4e-59 232.3 216 65.7
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 4.5e-59 231.9 204 65.7
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 1.0e-58 230.7 166 78.9
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.3e-58 230.3 204 64.2
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.7e-58 229.9 218 63.8
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.2e-58 229.6 204 63.2
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 2.9e-58 229.2 217 63.1
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 3.8e-58 228.8 222 63.5
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 1.9e-57 226.5 273 54.6
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 3.2e-57 225.7 229 63.3
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 7.2e-57 224.6 214 62.1
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 1.4e-55 220.3 222 61.7
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 1.4e-55 220.3 212 65.6
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 1.1e-54 217.2 258 55.0
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 3.3e-54 215.7 222 59.9
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 1.8e-52 209.9 210 61.0
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 9.1e-52 207.6 204 61.8
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 1.2e-51 207.2 173 71.7
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 1.0e-50 204.1 217 59.4
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 1.5e-49 200.3 205 60.5
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 3.2e-49 199.1 206 59.2
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 4.2e-49 198.7 205 58.5
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 8.0e-48 194.5 217 56.7
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 1.5e-46 190.3 184 65.2
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 1.5e-46 190.3 165 70.3
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 6.3e-45 184.9 215 57.2
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 1.8e-44 183.3 288 46.5
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 4.1e-44 182.2 169 67.5
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 9.1e-44 181.0 171 65.5
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 2.7e-43 179.5 164 67.1
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 3.5e-43 179.1 165 66.7
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 4.5e-43 178.7 179 64.2
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 4.5e-43 178.7 94 96.8
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 7.7e-43 177.9 97 94.8
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 1.3e-42 177.2 184 63.0
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.8e-42 175.6 92 95.7
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 5.0e-42 175.3 92 94.6
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 5.0e-42 175.3 92 95.7
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 8.5e-42 174.5 92 94.6
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 8.5e-42 174.5 92 94.6
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 1.5e-41 173.7 92 94.6
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.9e-41 173.3 92 94.6
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 1.9e-41 173.3 206 54.4
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 5.5e-41 171.8 92 93.5
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 7.2e-41 171.4 165 63.6
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 9.4e-41 171.0 93 94.6
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 2.6e-38 162.9 218 51.4
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 4.4e-38 162.2 92 89.1
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 4.4e-38 162.2 92 89.1
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 4.4e-38 162.2 275 45.8
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 5.7e-38 161.8 95 92.6
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 7.5e-38 161.4 165 59.4
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 2.8e-37 159.5 269 46.1
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 5.4e-36 155.2 223 47.5
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 4.5e-35 152.1 192 46.9
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 4.5e-35 152.1 204 48.5
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 1.4e-31 140.6 206 48.5
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 1.5e-30 137.1 181 53.6
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 1.4e-28 130.6 212 43.9
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 1.8e-28 130.2 241 43.2
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 3.5e-27 125.9 100 72.0
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 1.3e-26 124.0 316 37.0
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 5.6e-25 118.6 107 66.4
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 1.2e-24 117.5 168 47.0
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 6.1e-24 115.2 143 54.5
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 5.2e-23 112.1 157 52.9
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 6.8e-23 111.7 63 87.3
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 2.0e-22 110.2 176 43.8
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 6.0e-19 98.6 52 94.2
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 2.8e-16 89.7 283 33.9
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 8.0e-16 88.2 160 41.9
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.1e-15 87.8 114 52.6
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 1.8e-15 87.0 76 65.8
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 1.8e-15 87.0 76 65.8
vmacro17760 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.8e-15 87.0 88 59.1
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 6.8e-15 85.1 119 52.1
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 2.0e-14 83.6 164 42.7
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 1.1e-12 77.8 40 92.5
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 5.4e-12 75.5 119 41.2
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 7.0e-12 75.1 60 71.7
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 9.2e-12 74.7 56 71.4
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 9.2e-12 74.7 59 72.9
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 9.2e-12 74.7 108 46.3
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.0e-10 71.2 108 44.4
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 3.9e-10 69.3 41 82.9
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 1.2e-08 64.3 40 77.5
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.2e-08 64.3 42 81.0
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.4e-07 60.8 35 88.6
Cc00_g01560 Coffea canephora HOM05D005752 ORTHO05D006959 4.4e-06 55.8 85 44.7


User provided reference genes

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