Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1586.6 824 100.0
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 1.4e-297 1026.2 882 67.7
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 4.4e-291 1004.6 882 66.7
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 2.7e-288 995.3 882 66.2
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 1.0e-287 993.4 886 65.0
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 7.6e-283 977.2 882 63.9
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 7.1e-281 970.7 950 62.1
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 1.3e-279 966.5 882 64.2
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 5.1e-279 964.5 874 65.1
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 8.7e-279 963.8 891 63.5
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 2.1e-277 959.1 882 64.2
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 1.4e-273 946.4 886 62.3
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 2.1e-272 942.6 882 62.0
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 3.5e-272 941.8 882 61.9
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 4.6e-272 941.4 935 61.3
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 1.8e-271 939.5 891 61.8
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 3.0e-271 938.7 882 62.5
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 8.7e-271 937.2 882 62.4
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 1.1e-270 936.8 892 62.0
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 1.5e-270 936.4 895 61.6
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 1.5e-270 936.4 882 62.6
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 2.5e-270 935.6 971 59.1
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 5.6e-270 934.5 884 62.3
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 9.6e-270 933.7 884 62.3
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 1.3e-269 933.3 861 62.8
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 6.2e-269 931.0 891 61.6
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 9.0e-268 927.2 880 62.3
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 1.5e-267 926.4 891 61.4
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 2.0e-267 926.0 880 63.0
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 2.6e-267 925.6 891 61.5
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 9.9e-267 923.7 891 61.3
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 2.9e-266 922.2 892 61.1
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 9.3e-265 917.1 882 61.6
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 1.2e-264 916.8 864 61.8
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.2e-264 916.8 882 61.5
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 1.0e-263 913.7 882 61.3
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 4.3e-262 908.3 882 61.3
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 9.0e-260 900.6 882 60.4
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 1.4e-257 893.3 919 58.5
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 1.4e-257 893.3 882 60.3
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 1.9e-257 892.9 867 61.2
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 2.5e-257 892.5 895 59.2
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 5.5e-257 891.3 882 60.2
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 7.1e-257 891.0 883 60.6
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 3.5e-256 888.6 895 59.3
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 4.6e-256 888.3 877 60.8
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 2.3e-255 885.9 895 59.1
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 6.7e-255 884.4 902 59.0
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 1.3e-253 880.2 891 60.3
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 1.6e-253 879.8 886 60.0
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 8.2e-253 877.5 891 58.8
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 1.1e-252 877.1 895 58.8
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 2.9e-250 869.0 868 59.8
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 8.8e-247 857.4 868 59.3
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 4.3e-246 855.1 867 58.8
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 9.7e-246 854.0 894 57.8
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 8.2e-245 850.9 902 57.2
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 8.2e-245 850.9 882 57.6
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 1.1e-241 840.5 892 57.7
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 1.1e-241 840.5 882 57.8
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 1.2e-240 837.0 889 57.0
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 7.9e-240 834.3 882 57.6
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 4.4e-238 828.6 930 54.2
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 5.7e-238 828.2 708 68.5
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 5.7e-238 828.2 708 68.5
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 5.7e-238 828.2 895 55.8
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 3.8e-234 815.5 891 56.0
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 3.9e-231 805.4 717 66.4
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 5.7e-230 801.6 867 56.4
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 2.8e-229 799.3 882 55.2
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 3.7e-229 798.9 895 54.7
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 2.6e-227 792.7 895 54.6
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 3.6e-224 782.3 864 54.3
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 5.7e-222 775.0 856 55.4
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 2.8e-221 772.7 882 53.5
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 2.4e-220 769.6 804 58.0
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 1.3e-218 763.8 882 53.3
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 2.2e-218 763.1 703 63.6
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 7.2e-217 758.1 876 54.5
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 2.1e-216 756.5 876 54.3
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 3.0e-215 752.7 875 53.1
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 3.8e-210 735.7 831 54.4
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 2.0e-206 723.4 854 55.9
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 6.6e-202 708.4 885 49.5
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 1.9e-201 706.8 891 50.4
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 3.3e-201 706.1 832 50.8
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 5.6e-201 705.3 890 50.3
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 1.2e-200 704.1 890 50.2
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 4.7e-200 702.2 872 51.1
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 4.7e-200 702.2 892 50.3
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 6.1e-200 701.8 891 50.2
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 1.0e-199 701.0 892 50.2
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 1.0e-199 701.0 892 50.2
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 1.4e-199 700.7 890 49.9
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 1.2e-198 697.6 870 51.3
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 3.4e-198 696.0 881 50.4
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 4.4e-190 669.1 876 49.4
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 3.7e-189 666.0 875 48.9
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 3.9e-186 656.0 869 48.8
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 3.9e-186 656.0 891 47.7
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 1.6e-184 650.6 879 47.1
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 2.8e-184 649.8 870 46.8
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 1.4e-180 637.5 872 47.5
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 6.4e-173 612.1 622 59.0
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 7.3e-169 598.6 615 57.9
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 5.6e-161 572.4 832 46.6
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.5e-158 564.3 464 68.5
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 2.0e-158 563.9 771 46.8
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 8.7e-138 495.4 662 48.5
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 1.8e-135 487.6 708 44.9
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 1.7e-117 427.9 733 39.0
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 8.5e-117 425.6 714 39.1
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 2.6e-110 404.1 310 71.0
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 2.9e-101 374.0 319 66.1
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 9.8e-97 359.0 409 53.1
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 2.7e-86 324.3 398 48.5
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 2.3e-85 321.2 752 33.5
SEGI_23671 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 2.5e-84 317.8 300 59.0
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 2.2e-72 278.1 315 52.7
Actinidia26096 Actinidia chinensis HOM05D003193 ORTHO05D023334 1.1e-58 232.6 132 91.7
SEGI_04281 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 2.2e-56 224.9 310 46.8
Lsat_1_v5_gn_1_12580 Lactuca sativa HOM05D003193 ORTHO05D036451 8.1e-35 153.3 190 50.0
Lsat_1_v5_gn_5_100381 Lactuca sativa HOM05D003193 ORTHO05D036451 8.7e-29 133.3 88 79.5
Nitab4.5_0019712g0020 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.5e-28 132.5 79 88.6
Manes.08G142350 Manihot esculenta HOM05D003193 ORTHO05D023334 8.5e-16 90.1 99 47.5
Lsat_1_v5_gn_2_111060 Lactuca sativa HOM05D003193 ORTHO05D000541 2.1e-14 85.5 103 53.4
arahy.Tifrunner.gnm1.ann1.V6B23X Arachis hypogaea HOM05D003193 ORTHO05D084303 1.1e-12 79.7 123 43.9
SEGI_09842 Sequoiadendron giganteum HOM05D003193 ORTHO05D036451 7.4e-12 77.0 49 77.6
PSO104G0170 Papaver somniferum HOM05D003193 ORTHO05D000001 1.7e-08 65.9 37 78.4
Actinidia23236 Actinidia chinensis HOM05D003193 ORTHO05D055714 3.2e-07 61.6 121 41.3
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 3.2e-07 61.6 74 55.4
QL03p032673 Quercus lobata HOM05D003193 ORTHO05D337941 9.4e-07 60.1 47 61.7


User provided reference genes

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