Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia05319 Actinidia chinensis HOM05D003730 ORTHO05D054845 5.2e-119 431.0 212 100.0
Actinidia13153 Actinidia chinensis HOM05D000181 ORTHO05D003134 2.8e-11 73.2 70 64.3
CSS0030439 Camellia sinensis var. sinensis HOM05D003730 ORTHO05D004458 3.0e-10 69.7 48 81.2
SalBow4G0960 Salvia bowleyana HOM05D003730 ORTHO05D004458 3.0e-10 69.7 111 43.2
MELO3C003137.2 Cucumis melo HOM05D003730 ORTHO05D004458 4.0e-10 69.3 48 79.2
CsaV3_4G025080 Cucumis sativus L. HOM05D003730 ORTHO05D004458 4.0e-10 69.3 48 79.2
Peaxi162Scf00165g00819 Petunia axillaris HOM05D003730 ORTHO05D004458 4.0e-10 69.3 48 79.2
Nn2g13382 Nelumbo nucifera HOM05D003730 ORTHO05D004458 5.2e-10 68.9 48 77.1
Actinidia13152 Actinidia chinensis HOM05D003730 ORTHO05D004458 6.8e-10 68.6 48 79.2
Migut.J00321 Erythranthe guttata HOM05D003730 ORTHO05D004458 6.8e-10 68.6 48 77.1
Sed0018240 Sechium edule HOM05D003730 ORTHO05D004458 6.8e-10 68.6 48 77.1
TAR623G1158 Trochodendron aralioides HOM05D003730 ORTHO05D004458 8.9e-10 68.2 48 79.2
AT2G37660 Arabidopsis thaliana HOM05D003730 ORTHO05D004458 1.2e-09 67.8 48 75.0
Ciclev10012166m.g Citrus clementina HOM05D003730 ORTHO05D004458 1.2e-09 67.8 48 77.1
COL.COLO4_14783 Corchorus olitorius HOM05D003730 ORTHO05D004458 1.2e-09 67.8 48 77.1
Duzib128G1894 Durio zibethinus HOM05D003730 ORTHO05D004458 1.2e-09 67.8 48 77.1
HanXRQChr01g0003071 Helianthus annuus HOM05D003730 ORTHO05D004458 1.2e-09 67.8 48 77.1
Manes.08G088900 Manihot esculenta HOM05D003730 ORTHO05D004458 1.2e-09 67.8 48 77.1
Nitab4.5_0004639g0020 Nicotiana tabacum HOM05D003730 ORTHO05D004458 1.2e-09 67.8 48 77.1
Thecc.05G037600 Theobroma cacao HOM05D003730 ORTHO05D004458 1.2e-09 67.8 48 77.1
CSS0040011 Camellia sinensis var. sinensis HOM05D003730 ORTHO05D004458 1.5e-09 67.4 48 77.1
Lsat_1_v5_gn_5_149640 Lactuca sativa HOM05D003730 ORTHO05D004458 1.5e-09 67.4 54 66.7
Potri.006G086800 Populus trichocarpa HOM05D003730 ORTHO05D004458 1.5e-09 67.4 48 77.1
Sabra06G0066200 Salix brachista HOM05D003730 ORTHO05D004458 1.5e-09 67.4 48 77.1
vmacro08647 Vaccinium macrocarpon HOM05D003730 ORTHO05D004458 1.5e-09 67.4 48 75.0
MSTRG.5656 Avicennia marina HOM05D003730 ORTHO05D004458 2.0e-09 67.0 47 76.6
Aa31LG5G23160 Aethionema arabicum HOM05D003730 ORTHO05D004458 2.6e-09 66.6 48 75.0
Gohir.A09G155032 Gossypium hirsutum HOM05D003730 ORTHO05D004458 2.6e-09 66.6 48 75.0
Gorai.006G171900 Gossypium raimondii HOM05D003730 ORTHO05D004458 2.6e-09 66.6 48 75.0
Nitab4.5_0000705g0180 Nicotiana tabacum HOM05D003730 ORTHO05D004458 2.6e-09 66.6 45 80.0
TWI74G0344 Tripterygium wilfordii HOM05D003730 ORTHO05D004458 2.6e-09 66.6 48 75.0
Aqoxy2G02240 Aquilegia oxysepala HOM05D003730 ORTHO05D004458 3.4e-09 66.2 48 75.0
BcaB02g09264 Brassica carinata HOM05D003730 ORTHO05D004458 3.4e-09 66.2 48 72.9
BcaB02g09265 Brassica carinata HOM05D003730 ORTHO05D004458 3.4e-09 66.2 48 72.9
CAN.G1685.1 Capsicum annuum HOM05D003730 ORTHO05D004458 3.4e-09 66.2 48 72.9
Cpa.g.sc169.22 Carica papaya HOM05D003730 ORTHO05D004458 3.4e-09 66.2 45 77.8
Oeu010095.1 Olea europaea HOM05D003730 ORTHO05D004458 3.4e-09 66.2 47 78.7
Sp4g20020 Schrenkiella parvula HOM05D003730 ORTHO05D004458 3.4e-09 66.2 48 72.9
Actinidia26475 Actinidia chinensis HOM05D003730 ORTHO05D004458 4.4e-09 65.9 48 75.0
CARHR131920 Cardamine hirsuta HOM05D003730 ORTHO05D004458 4.4e-09 65.9 48 72.9
FAN05G3435 Fragaria x ananassa HOM05D003730 ORTHO05D004458 4.4e-09 65.9 48 72.9
Glyma.07G133200 Glycine max HOM05D003730 ORTHO05D004458 4.4e-09 65.9 47 76.6
Prupe.6G257200 Prunus persica HOM05D003730 ORTHO05D004458 4.4e-09 65.9 48 72.9
unitig_8.g4054 Utricularia gibba HOM05D003730 ORTHO05D004458 4.4e-09 65.9 48 75.0
A05p08310 Brassica napus HOM05D003730 ORTHO05D004458 5.7e-09 65.5 47 74.5
DCAR_012103 Daucus carota HOM05D003730 ORTHO05D004458 5.7e-09 65.5 48 72.9
Duzib093G1851 Durio zibethinus HOM05D003730 ORTHO05D004458 5.7e-09 65.5 48 75.0
ECA248G3650 Erigeron canadensis HOM05D003730 ORTHO05D004458 5.7e-09 65.5 48 72.9
Glyma.18G182600 Glycine max HOM05D003730 ORTHO05D004458 5.7e-09 65.5 47 76.6
Phvul.008G119600 Phaseolus vulgaris HOM05D003730 ORTHO05D004458 5.7e-09 65.5 47 76.6
TWI77G0750 Tripterygium wilfordii HOM05D003730 ORTHO05D004458 5.7e-09 65.5 48 72.9
vmacro20165 Vaccinium macrocarpon HOM05D003730 ORTHO05D004458 5.7e-09 65.5 48 75.0
VMungo1383G3507 Vigna mungo HOM05D003730 ORTHO05D004458 5.7e-09 65.5 47 76.6
Thhalv10016917m.g Eutrema salsugineum HOM05D003730 ORTHO05D004458 7.5e-09 65.1 48 70.8
Oeu036136.3 Olea europaea HOM05D003730 ORTHO05D004458 7.5e-09 65.1 47 76.6
Sopen09g005650 Solanum pennellii HOM05D003730 ORTHO05D004458 7.5e-09 65.1 48 70.8
THA.LOC104823415 Tarenaya hassleriana HOM05D003730 ORTHO05D004458 7.5e-09 65.1 48 70.8
TAR636G1862 Trochodendron aralioides HOM05D003730 ORTHO05D004458 7.5e-09 65.1 48 72.9
Zm00001eb355850 Zea mays HOM05D003730 ORTHO05D004458 7.5e-09 65.1 47 74.5
Atru.chr8.1989 Acer truncatum HOM05D003730 ORTHO05D004458 9.8e-09 64.7 48 72.9
CiPaw.10G146400 Carya illinoinensis HOM05D003730 ORTHO05D004458 9.8e-09 64.7 48 70.8
FvH4_6g13500 Fragaria vesca HOM05D003730 ORTHO05D004458 9.8e-09 64.7 48 70.8
FAN14G3787 Fragaria x ananassa HOM05D003730 ORTHO05D004458 9.8e-09 64.7 48 70.8
Gohir.D09G150600 Gossypium hirsutum HOM05D003730 ORTHO05D004458 9.8e-09 64.7 48 72.9
Lj2A93T84 Lonicera japonica HOM05D003730 ORTHO05D004458 9.8e-09 64.7 48 70.8
Carub.0004s1959 Capsella rubella HOM05D003730 ORTHO05D004458 1.3e-08 64.3 48 70.8
MBI14_g12122_MAGBIO Magnolia biondii HOM05D003730 ORTHO05D004458 1.3e-08 64.3 48 72.9
arahy.Tifrunner.gnm1.ann1.CCZS04 Arachis hypogaea HOM05D003730 ORTHO05D004458 1.7e-08 63.9 47 74.5
BcaC02g11887 Brassica carinata HOM05D003730 ORTHO05D004458 1.7e-08 63.9 48 72.9
C04p10280 Brassica napus HOM05D003730 ORTHO05D004458 1.7e-08 63.9 48 72.9
BolC4t22626H Brassica oleracea HOM05D003730 ORTHO05D004458 1.7e-08 63.9 48 72.9
CDE08G1340 Ceratophyllum demersum HOM05D000714 ORTHO05D000544 1.7e-08 63.9 48 75.0
FAN09G4346 Fragaria x ananassa HOM05D003730 ORTHO05D004458 1.7e-08 63.9 48 68.8
Lj3A966G51 Lonicera japonica HOM05D003730 ORTHO05D004458 1.7e-08 63.9 48 72.9
Lalb_Chr03g0042331 Lupinus albus HOM05D003730 ORTHO05D004458 1.7e-08 63.9 47 74.5
MD04G1130500 Malus domestica HOM05D003730 ORTHO05D004458 1.7e-08 63.9 48 70.8
Psat3g138600 Pisum sativum HOM05D003730 ORTHO05D004458 1.7e-08 63.9 47 74.5
QL07p048679 Quercus lobata HOM05D003730 ORTHO05D004458 1.7e-08 63.9 48 68.8
PGSC0003DMG400008830 Solanum tuberosum HOM05D003730 ORTHO05D004458 1.7e-08 63.9 48 68.8
Ca_07559_v3 Cicer arietinum L. HOM05D003730 ORTHO05D004458 2.2e-08 63.5 47 70.2
FAN02G4300 Fragaria x ananassa HOM05D003730 ORTHO05D004458 2.2e-08 63.5 48 68.8
Hma1.2p1_0936F.1_g238830 Hydrangea macrophylla HOM05D003730 ORTHO05D004458 2.2e-08 63.5 48 70.8
Hma1.2p1_1889F.1_g306630 Hydrangea macrophylla HOM05D003730 ORTHO05D004458 2.2e-08 63.5 48 72.9
Os05g0110300 Oryza sativa ssp. japonica HOM05D003730 ORTHO05D004458 2.2e-08 63.5 47 72.3
PSO339G5845 Papaver somniferum HOM05D003730 ORTHO05D004458 2.2e-08 63.5 47 74.5
PSO513G0074 Papaver somniferum HOM05D003730 ORTHO05D004458 2.2e-08 63.5 47 74.5
Pp3c14_3760 Physcomitrium patens HOM05D003730 ORTHO05D004458 2.2e-08 63.5 47 70.2
RcHm_v2.0_Chr3g0466371 Rosa chinensis HOM05D003730 ORTHO05D004458 2.2e-08 63.5 48 70.8
Solyc09g010930.4 Solanum lycopersicum HOM05D003730 ORTHO05D004458 2.2e-08 63.5 48 68.8
arahy.Tifrunner.gnm1.ann1.D1PGNE Arachis hypogaea HOM05D003730 ORTHO05D004458 2.9e-08 63.2 47 74.5
AUR62041348 Chenopodium quinoa HOM05D003730 ORTHO05D004458 3.7e-08 62.8 48 72.9
AUR62041751 Chenopodium quinoa HOM05D003730 ORTHO05D004458 3.7e-08 62.8 48 72.9
Zm00001eb266940 Zea mays HOM05D003730 ORTHO05D004458 3.7e-08 62.8 47 72.3
BcaB06g29015 Brassica carinata HOM05D003730 ORTHO05D004458 4.9e-08 62.4 48 66.7
BcaC02g07503 Brassica carinata HOM05D003730 ORTHO05D004458 4.9e-08 62.4 48 66.7
CiPaw.09G194500 Carya illinoinensis HOM05D003730 ORTHO05D004458 4.9e-08 62.4 48 68.8
Lj1g0003421 Lotus japonicus HOM05D003730 ORTHO05D004458 4.9e-08 62.4 47 70.2
PGR004G0886 Punica granatum HOM05D003730 ORTHO05D004458 6.4e-08 62.0 47 74.5
Cc06_g02520 Coffea canephora HOM05D003730 ORTHO05D004458 8.3e-08 61.6 45 73.3
Eucgr.A01273 Eucalyptus grandis HOM05D003730 ORTHO05D004458 8.3e-08 61.6 48 70.8
MD12G1143700 Malus domestica HOM05D003730 ORTHO05D004458 8.3e-08 61.6 48 70.8
Zm00001eb062770 Zea mays HOM05D003730 ORTHO05D004458 8.3e-08 61.6 48 68.8
MSTRG.5810 Avicennia marina HOM05D003730 ORTHO05D004458 1.1e-07 61.2 47 74.5
A04p28820 Brassica napus HOM05D003730 ORTHO05D004458 1.1e-07 61.2 45 68.9
C04p66100 Brassica napus HOM05D003730 ORTHO05D004458 1.1e-07 61.2 45 68.9
BolC4t28114H Brassica oleracea HOM05D003730 ORTHO05D004458 1.1e-07 61.2 45 68.9
BraA04t18359Z Brassica rapa HOM05D003730 ORTHO05D004458 1.1e-07 61.2 45 68.9
ClCG04G008110 Citrullus lanatus HOM05D003730 ORTHO05D004458 1.1e-07 61.2 42 78.6
GSVIVG01034152001 Vitis vinifera HOM05D003730 ORTHO05D004458 1.1e-07 61.2 48 68.8
arahy.Tifrunner.gnm1.ann1.E6NKCB Arachis hypogaea HOM05D003730 ORTHO05D004458 1.4e-07 60.8 45 73.3
arahy.Tifrunner.gnm1.ann1.L41CIL Arachis hypogaea HOM05D003730 ORTHO05D004458 1.4e-07 60.8 45 73.3
Cfa017360 Carpinus fangiana HOM05D003730 ORTHO05D004458 1.4e-07 60.8 47 68.1
CDE04G1817 Ceratophyllum demersum HOM05D003730 ORTHO05D004458 1.4e-07 60.8 48 66.7
Haze_20813 Corylus avellana HOM05D003730 ORTHO05D004458 1.4e-07 60.8 49 63.3
AT5G02240 Arabidopsis thaliana HOM05D003730 ORTHO05D004458 1.8e-07 60.5 47 70.2
Thhalv10014474m.g Eutrema salsugineum HOM05D003730 ORTHO05D004458 1.8e-07 60.5 47 70.2
Os03g0822200 Oryza sativa ssp. japonica HOM05D003730 ORTHO05D004458 1.8e-07 60.5 48 66.7
A10p33380 Brassica napus HOM05D003730 ORTHO05D004458 2.4e-07 60.1 72 52.8
BraA10t45369Z Brassica rapa HOM05D003730 ORTHO05D004458 2.4e-07 60.1 72 52.8
CSS0038960 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D003134 2.4e-07 60.1 71 53.5
Rhsim05G0193900 Rhododendron simsii HOM05D003730 ORTHO05D004458 2.4e-07 60.1 48 68.8
AL6G11480 Arabidopsis lyrata HOM05D003730 ORTHO05D004458 3.2e-07 59.7 47 68.1
Psat7g235680 Pisum sativum HOM05D003730 ORTHO05D004458 3.2e-07 59.7 47 68.1
HPP92_018136 Vanilla planifolia HOM05D003730 ORTHO05D004458 3.2e-07 59.7 47 70.2
CARHR211130 Cardamine hirsuta HOM05D003730 ORTHO05D004458 4.1e-07 59.3 47 70.2
Lalb_Chr12g0209561 Lupinus albus HOM05D003730 ORTHO05D004458 4.1e-07 59.3 47 68.1
Medtr4g021815 Medicago truncatula HOM05D003730 ORTHO05D004458 4.1e-07 59.3 47 68.1
Aa31LG1G22500 Aethionema arabicum HOM05D005507 ORTHO05D007316 5.4e-07 58.9 47 68.1
BcaB06g29016 Brassica carinata HOM05D003730 ORTHO05D004458 5.4e-07 58.9 41 73.2
C09p74290 Brassica napus HOM05D003730 ORTHO05D004458 5.4e-07 58.9 47 68.1
BolC9t60162H Brassica oleracea HOM05D003730 ORTHO05D004458 5.4e-07 58.9 47 68.1
CANSAT54G2707 Cannabis sativa HOM05D003730 ORTHO05D004458 5.4e-07 58.9 48 66.7
Haze_20815 Corylus avellana HOM05D000181 ORTHO05D003134 5.4e-07 58.9 69 50.7
Sc20g0005000 Simmondsia chinensis HOM05D003730 ORTHO05D004458 5.4e-07 58.9 49 69.4
TPR.G1677 Trifolium pratense HOM05D003730 ORTHO05D004458 5.4e-07 58.9 47 66.0
VMungo0331G0374 Vigna mungo HOM05D003730 ORTHO05D004458 5.4e-07 58.9 47 68.1
DCAR_024060 Daucus carota HOM05D003730 ORTHO05D004458 7.0e-07 58.5 48 66.7
Pp3c15_16990 Physcomitrium patens HOM05D003730 ORTHO05D004458 7.0e-07 58.5 47 63.8
ATR0559G007 Amborella trichopoda HOM05D003730 ORTHO05D004458 9.2e-07 58.2 47 66.0
Lj3g0005938 Lotus japonicus HOM05D003730 ORTHO05D004458 9.2e-07 58.2 47 66.0
Mapoly0187s0017 Marchantia polymorpha HOM05D003730 ORTHO05D004458 9.2e-07 58.2 47 66.0
Medtr7g062140 Medicago truncatula HOM05D003730 ORTHO05D004458 9.2e-07 58.2 47 63.8
QL07p048749 Quercus lobata HOM05D000181 ORTHO05D003134 1.2e-06 57.8 70 47.1
Rhsim04G0158400 Rhododendron simsii HOM05D000181 ORTHO05D003134 1.2e-06 57.8 73 50.7
Sp6g40210 Schrenkiella parvula HOM05D003730 ORTHO05D004458 1.2e-06 57.8 47 66.0
THA.LOC104816264 Tarenaya hassleriana HOM05D003730 ORTHO05D004458 1.2e-06 57.8 47 66.0
TWI74G0890 Tripterygium wilfordii HOM05D000181 ORTHO05D003134 1.2e-06 57.8 69 50.7
Carub.0006s0108 Capsella rubella HOM05D003730 ORTHO05D004458 1.6e-06 57.4 47 66.0
Manes.09G092700 Manihot esculenta HOM05D003730 ORTHO05D004458 1.6e-06 57.4 47 66.0
PGR031G0852 Punica granatum HOM05D003730 ORTHO05D004458 2.0e-06 57.0 45 66.7
Ca_27652_v3 Cicer arietinum L. HOM05D003730 ORTHO05D004458 2.7e-06 56.6 47 63.8
Pp3c9_11060 Physcomitrium patens HOM05D003730 ORTHO05D004458 2.7e-06 56.6 49 59.2
TPR.G5554 Trifolium pratense HOM05D003730 ORTHO05D004458 2.7e-06 56.6 47 66.0
vmacro08645 Vaccinium macrocarpon HOM05D000181 ORTHO05D003134 3.5e-06 56.2 73 49.3
Sabra16G0101000 Salix brachista HOM05D000181 ORTHO05D003134 4.6e-06 55.8 72 45.8
EL10As1g23062 Beta vulgaris HOM05D003730 ORTHO05D004458 5.9e-06 55.5 48 64.6
AL6G11490 Arabidopsis lyrata HOM05D003730 ORTHO05D004458 7.8e-06 55.1 61 52.5
Nn2g13391 Nelumbo nucifera HOM05D000181 ORTHO05D003134 7.8e-06 55.1 69 50.7
Phvul.010G011300 Phaseolus vulgaris HOM05D003730 ORTHO05D004458 7.8e-06 55.1 47 63.8


User provided reference genes

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